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Properties
| Property Name | Value |
|---|
| TranscriptId | 592547 |
| Track | FilteredModels2 |
| ProteinId | 592461 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:388199..390984 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5420 ID=mRNA_5420|Name=jgi.p|Nanoce1779_2|592461|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp
CAACAGCACATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGC
ATCGGTGGTCATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGG
CCTCCTTGGTACGTGAGAAGGGGAAGAAGAGAGAGGGAGGAGGATGGGGC
AGCGTGATGCATGAGAGAGAGATCCATACCCTCCCCCACCACTCATACAA
ACACGAGCAGAGGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGG
ATGGGAGCAAGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGG
GAACCCTCAGGCACCCCTTGGACGCCTGCACCGGTGGCGGAGGACTACGA
GGAGACGATTCAAATCTTGCTCGAGAGCCACAAGGTGGAGGATGCACTGG
ATATCTTTGGGCGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATATC
ACGGACGAGCTGTACGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGC
AGCTGTGAAGGCGCTTGATGGTCTGCCCTAAAAAGGTGCTCATCGATTGT
CTTTATGTTATTGTCTGTTGGAATTATAATGGTTGTGGTATGGTGGTGGT
GCGAATGAGGGGCAGGCGGGAGGAAGGAGAGCAAGTTTTAGGAAAGCAGG
GGCTTGCTAGTAGTTAAGTCCATCCATGTATTTATTGAGTCGGCGGACGA
TTTTAGAGTTTGGAAATTGGCTGTTGGAGGGGAAAGAGTGGCAACGGCCG
TTCCCAGATGCACTCGGCTGGCGGGCAGATTGGTGGAGGAGGAGCGCGCA
ACGGGAGAGATTCAAAGCAAGAGGCTCGACTTTATTGAGGCTTCTGTCGC
GAGGCCTCGAGTCGATTTCATTCTCGGCTGCGGGGATTGGGGACACAATA
GGCACACACGTACAAGCCCGGAGCTTTTTGTTTCCATCTCTCTGCCGTCG
TTCCAAGAGATCCCTAGCATACTCAAATCTCTGATGAATGAAAGAAAACA
AAAAGAGTCGACGAAGGCAAACGGCAAGCAGCGCTGGTATGATATGTCAT
TTTTGGGATGCTTTGATGTTTACTTCTCTCTTCTCCAATCTTTCGGCTGT
GGCCTTCAAAGCATGGGCCCGTGAGCATTAATGTGGTGCTGTGGTGTGTC
ATTCTTCGAATCATTTTTTTTGGGCGTGAGTGGGAGAAAAAATTGCGACA
AGCTTGTTGAGAAAGTCCTGAGGACAGGCATTATATCCAGAAAAATTCAA
GCGTATAGGTGGACATTTCCCAGAGCCTTTTCTGGCGCGCCTCCCTTCCC
TTCCCGTCAAGCTGATTCTGAGCCAATAGACAACCACTGCGCTCTTTCCT
TCCTCACGTCTTCATGCTTTCGTCGAATCAACGTCTAATCCCTATTTTCC
TCGAAACAGCTTTCTGCACTTTTCAACACGTTTTCTGGGGTCCCAAGTTT
TTCACACACACGACACACATGCAAACATGCCGTTAACCCTACAGTACCGG
ACCAGCGCCTCCCACTGCGCCGCCTACCCCCTGTTCCATGCAACTTTACA
AATTACAACCCTTACCTGACTCTCCCCCACCTATCTCTGATCTCCCTCAC
ACTCTTTCTCTCTCTCTCCCTCTCACTTTGTCGCATGGTAGGAACCCCCC
CTCTCTCTCTCTATCTCACGCTCGTTACTTCTCTCTGTATGTATTATTTT
CTTCCACTATTGCACCTTGTACATATTTGCCTTTCTTTCCGCCTTCTTTA
ATATCTCCTCGGAACAAGATACACCAGACCACCACCCTTCCCATCACCTC
CTGATCCGTTCGCCGTTCATTCTGTCTCCCATCCCCTCTCTTTCAAGATT
CCTTCTAGATTTCGACACACGCACCTTTTCTCTACTCCATCATGCTCTCT
TTCCTAACGGTAATCTTATGTGCCATTTCCCCCTCTTTCTCCGCAATATG
TACTTGTTTTTCTCCTTCCCTCTCCTCCCCCCGTGTACCCCACCCTACCC
TC back to topprotein sequence of jgi.p|Nanoce1779_2|592461 >mRNA_5420-protein ID=mRNA_5420-protein|Name=jgi.p|Nanoce1779_2|592461|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MALRQLLRRGATVASVVIPTSQRAVACPVVASLVREKGKKREGGGWGSVM
HEREIHTLPHHSYKHEQRYVSSTSVTQLPLDGSKMPSATESEEEEGREPS
GTPWTPAPVAEDYEETIQILLESHKVEDALDIFGRMIKRGFRPSSNITDE
LYAVAKTKPEWQAAAVKALDGLP* back to topmRNA from alignment at scaffold_13:388199..390984+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5420 ID=mRNA_5420|Name=jgi.p|Nanoce1779_2|592461|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at scaffold_13:388199..390984+ (Nannochloropsis oceanica)
CAACAGCACATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGC
ATCGGTGGTCATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGG
CCTCCTTGGTACGTGAGAAGGGGAAGAAGAGAGAGGGAGGAGGATGGGGC
AGCGTGATGCATGAGAGAGAGATCCATACCCTCCCCCACCACTCATACAA
ACACGAGCAGAGGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGG
ATGGGAGCAAGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGG
GAACCCTCAGGTGAGTCCCGCGCTAAAGTGGAGATGCTTGGGATGAACTT
TTGGAATCTCACTGTAGGCAACAGACAGGGCTCCTGATATATGTCAATTC
AGAATGGTCTGGATGGCATACTACCGCGAAGAGATGCGCTTTTTAAAACC
CCAGAGACATGTGATGCCTTCCTTTTTATCCAATTCTTCTGCATTGCACT
TTAAATTTAATCATTCTACTCAATCAAATCCCACTACGTCCAATTAAAAT
TCAGGCACCCCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGAC
GATTCAAATCTTGCTCGAGAGCCACAAGGTAAGGAAGAGGACAAGGAGGG
AAGAGAAAGGATTGGGTTGAGCTGTAGATAGTCATGTATTATCACACAGG
CTCACTCGAAACTCACCTCATTTCCATTCTGAAACATAGGTGGAGGATGC
ACTGGATATCTTTGGGCGAATGATCAAGCGTGGTTTTCGACCCAGCTCAA
ATGTAAGCCTCTCTTTCTTCGTCCTTTTTTGTCTAGCGCGGCGCTGTAAA
TTGCTCGCTATCTGCACTTCTTTCATCTTGCTTGCAACGGAATACGTCAA
TTCATCCTCAATTATTGTGATCTTTGAAGATGCGGCACCAAAGCAATCTT
TTTCCCTTCCCTTTCTTCATTTCCCTATGCCTCCTCGTCTAGATCACGGA
CGAGCTGTACGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTG
TGAAGGCGCTTGATGGTCTGCCCTAAAAAGGTGCTCATCGATTGTCTTTA
TGTTATTGTCTGTTGGAATTATAATGGTTGTGGTATGGTGGTGGTGCGAA
TGAGGGGCAGGCGGGAGGAAGGAGAGCAAGTTTTAGGAAAGCAGGGGCTT
GCTAGTAGTTAAGTCCATCCATGTATTTATTGAGTCGGCGGACGATTTTA
GAGTTTGGAAATTGGCTGTTGGAGGGGAAAGAGTGGCAACGGCCGTTCCC
AGATGCACTCGGCTGGCGGGCAGATTGGTGGAGGAGGAGCGCGCAACGGG
AGAGATTCAAAGCAAGAGGCTCGACTTTATTGAGGCTTCTGTCGCGAGGC
CTCGAGTCGATTTCATTCTCGGCTGCGGGGATTGGGGACACAATAGGGTA
CGTGGGCGGCTGGGAAGAGAAAGGAAATGGAATCAAGTGGATGTAGAGGA
AGAAGGGCGTGATGACTACAACCCTACTGCACGAGCACCCTGTCCTTGAC
GGAGATGCGCTGTGTGATGGTAAAACTTAATCTTTGAGATCTGACCCTAG
GTTAATCATCACGTGCGTCACGCTGCGTGGAATGATGGCGCTGGCATTTG
TCTTATCATATTCCTTCCTATACTCAACTCAAACAGCACACACGTACAAG
CCCGGAGCTTTTTGTTTCCATCTCTCTGCCGTCGTTCCAAGAGATCCCTA
GCATACTCAAATCTCTGATGAATGAAAGAAAACAAAAAGAGTCGACGAAG
GCAAACGGCAAGCAGCGCTGGTATGATATGTCATTTTTGGGATGCTTTGA
TGTTTACTTCTCTCTTCTCCAATCTTTCGGCTGTGGCCTTCAAAGCATGG
GCCCGTGAGCATTAATGTGGTGCTGTGGTGTGTCATTCTTCGAATCATTT
TTTTTGGGCGTGAGTGGGAGAAAAAATTGCGACAAGCTTGTTGAGAAAGT
CCTGAGGACAGGCATTATATCCAGAAAAATTCAAGCGTATAGGTGGACAT
TTCCCAGAGCCTTTTCTGGCGCGCCTCCCTTCCCTTCCCGTCAAGCTGAT
TCTGAGCCAATAGACAACCACTGCGCTCTTTCCTTCCTCACGTCTTCATG
CTTTCGTCGAATCAACGTCTAATCCCTATTTTCCTCGAAACAGCTTTCTG
CACTTTTCAACACGTTTTCTGGGGTCCCAAGTTTTTCACACACACGACAC
ACATGCAAACATGCCGTTAACCCTACAGTACCGGACCAGCGCCTCCCACT
GCGCCGCCTACCCCCTGTTCCATGCAACTTTACAAATTACAACCCTTACC
TGACTCTCCCCCACCTATCTCTGATCTCCCTCACACTCTTTCTCTCTCTC
TCCCTCTCACTTTGTCGCATGGTAGGAACCCCCCCTCTCTCTCTCTATCT
CACGCTCGTTACTTCTCTCTGTATGTATTATTTTCTTCCACTATTGCACC
TTGTACATATTTGCCTTTCTTTCCGCCTTCTTTAATATCTCCTCGGAACA
AGATACACCAGACCACCACCCTTCCCATCACCTCCTGATCCGTTCGCCGT
TCATTCTGTCTCCCATCCCCTCTCTTTCAAGATTCCTTCTAGATTTCGAC
ACACGCACCTTTTCTCTACTCCATCATGCTCTCTTTCCTAACGGTAATCT
TATGTGCCATTTCCCCCTCTTTCTCCGCAATATGTACTTGTTTTTCTCCT
TCCCTCTCCTCCCCCCGTGTACCCCACCCTACCCTC back to topCoding sequence (CDS) from alignment at scaffold_13:388199..390984+ >mRNA_5420 ID=mRNA_5420|Name=jgi.p|Nanoce1779_2|592461|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_13:388199..390984+ (Nannochloropsis oceanica)
ATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGT
CATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGG
TACGTGAGAAGGGGAAGAAGAGAGAGGGAGGAGGATGGGGCAGCGTGATG
CATGAGAGAGAGATCCATACCCTCCCCCACCACTCATACAAACACGAGCA
GAGGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCA
AGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCA
GGCACCCCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGAT
TCAAATCTTGCTCGAGAGCCACAAGGTGGAGGATGCACTGGATATCTTTG
GGCGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATATCACGGACGAG
CTGTACGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAA
GGCGCTTGATGGTCTGCCCTAAATGGCCCTACGACAACTACTGCGGCGTG
GGGCGACTGTGGCATCGGTGGTCATTCCGACCTCGCAGAGAGCCGTAGCG
TGTCCCGTCGTGGCCTCCTTGGTACGTGAGAAGGGGAAGAAGAGAGAGGG
AGGAGGATGGGGCAGCGTGATGCATGAGAGAGAGATCCATACCCTCCCCC
ACCACTCATACAAACACGAGCAGAGGTATGTCTCGAGCACGTCGGTGACC
CAGCTGCCGTTGGATGGGAGCAAGATGCCCTCGGCGACAGAGAGTGAGGA
GGAGGAGGGCAGGGAACCCTCAGGCACCCCTTGGACGCCTGCACCGGTGG
CGGAGGACTACGAGGAGACGATTCAAATCTTGCTCGAGAGCCACAAGGTG
GAGGATGCACTGGATATCTTTGGGCGAATGATCAAGCGTGGTTTTCGACC
CAGCTCAAATATCACGGACGAGCTGTACGCTGTGGCCAAGACGAAGCCCG
AGTGGCAGGCAGCAGCTGTGAAGGCGCTTGATGGTCTGCCCTAAATGGCC
CTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGTCATTCC
GACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGGTACGTG
AGAAGGGGAAGAAGAGAGAGGGAGGAGGATGGGGCAGCGTGATGCATGAG
AGAGAGATCCATACCCTCCCCCACCACTCATACAAACACGAGCAGAGGTA
TGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCAAGATGC
CCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCAGGCACC
CCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGATTCAAAT
CTTGCTCGAGAGCCACAAGGTGGAGGATGCACTGGATATCTTTGGGCGAA
TGATCAAGCGTGGTTTTCGACCCAGCTCAAATATCACGGACGAGCTGTAC
GCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAAGGCGCT
TGATGGTCTGCCCTAAATGGCCCTACGACAACTACTGCGGCGTGGGGCGA
CTGTGGCATCGGTGGTCATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCC
GTCGTGGCCTCCTTGGTACGTGAGAAGGGGAAGAAGAGAGAGGGAGGAGG
ATGGGGCAGCGTGATGCATGAGAGAGAGATCCATACCCTCCCCCACCACT
CATACAAACACGAGCAGAGGTATGTCTCGAGCACGTCGGTGACCCAGCTG
CCGTTGGATGGGAGCAAGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGA
GGGCAGGGAACCCTCAGGCACCCCTTGGACGCCTGCACCGGTGGCGGAGG
ACTACGAGGAGACGATTCAAATCTTGCTCGAGAGCCACAAGGTGGAGGAT
GCACTGGATATCTTTGGGCGAATGATCAAGCGTGGTTTTCGACCCAGCTC
AAATATCACGGACGAGCTGTACGCTGTGGCCAAGACGAAGCCCGAGTGGC
AGGCAGCAGCTGTGAAGGCGCTTGATGGTCTGCCCTAA back to top
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