jgi.p|Nanoce1779_2|577637, mRNA_542 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577637
Unique NamemRNA_542
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1182
Alignment locationscaffold_3:1309389..1310570 -

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Properties
Property NameValue
TranscriptId577723
TrackFilteredModels2
ProteinId577637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1309389..1310570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577637gene_542Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577637mRNA_542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_542CDS_542Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_542 ID=mRNA_542|Name=jgi.p|Nanoce1779_2|577637|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
AAACTGCAGGAGGACAAGCACTGCTTGTTGCCACACCTCCATCAACGGCA
TCACCGCACCGTAAGCAGACACGACAGCCATGCCTACCATCGCGATGCAC
ATCCACTCATTTCTCATCTTTCCCCTCTTGGTCTCTTCCTTCGTCCTTCC
GACTACGATCCAACCCTCCCATGCCCGACGCCGCGGCGCCCTGACCTGCA
TGGCTGCCTCGCCCTCCCCCGCCTCCAAGCTCCGCACCCTCCTCACGCAA
AAGGACATTCTAGTCATGCCCTGCTGCTATGACGGGCTGACGGCCCGCCT
GGTCGAAATGCATGGCTTTCCTATCACGTTCATGACGGGTTTTGGCGTCT
CTGCTGCGCGAGGACACCCTGACACCCAGCTACTCAGCTACGGAGAAATG
GTGGACAACGCCCGTCAAATTTCCGAGGCTCTGCAAACGATTCCTTGCAT
CGGTGACGGCGACACTGGGTACGGAAATGCCGTCAATGTAAAGCGCACTG
TGAAGGGGTACGCTCAAGCTGGACTGGCGGGAATTATGATTGAAGATCAA
GTGGCACCTAAGAAGTGTGGGCACACCAAGGGAAAGAGCTGTGTGTCGCG
GGAAGAGGCTTTTGCCCGGGTGCAAGCAGCGGTGGACGCACGGAACGAGG
GGGCGGATATTTTGATCATGGCAAGGACCGACGCCAGGGCCGGGTTGGGG
ATGGACGAAGCGATTTATCGTTGTCAGAAATTTCGTGAGATCGGTGCGGA
TATCACCTTCTTGGAGGCGCCGCATACGGAGGAGGAAATGCGACGATACT
GCCAAGAGGTGGAGGGACCAAAGCTGGCGAACATGCTTCAGAATGGTAAG
ACGCCGTCGTTCCCCCCGGCGAAGTTGCAGGAGATCGGGTATACAATCGT
GGCGTACCCGTTGGCGTTGTTGAGTGCTGGAATCAAGGCGATGAATGAGG
TGTTGGTGCTTGCGAAGGATGGGAAGGAATTTGAGCATCTCTTGGCGACG
TTTGAGGAGACGAAGGACGTGGTGGGCTTTCCGGCTTATTATGTGGCGGA
GGACAAGGCGGCAGGCGACATTGAGGCGTTTCGGGAGTAAGAAGAGGAAG
AGGAGGAGGAAGAGGAGGAGGAGGAGGACGAGGAGAGGTTGAGAGGGTGA
GAGAGTGAGGAAGATTGGTTGGGGTCTTGAAG
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protein sequence of jgi.p|Nanoce1779_2|577637

>mRNA_542-protein ID=mRNA_542-protein|Name=jgi.p|Nanoce1779_2|577637|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MPTIAMHIHSFLIFPLLVSSFVLPTTIQPSHARRRGALTCMAASPSPASK
LRTLLTQKDILVMPCCYDGLTARLVEMHGFPITFMTGFGVSAARGHPDTQ
LLSYGEMVDNARQISEALQTIPCIGDGDTGYGNAVNVKRTVKGYAQAGLA
GIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMART
DARAGLGMDEAIYRCQKFREIGADITFLEAPHTEEEMRRYCQEVEGPKLA
NMLQNGKTPSFPPAKLQEIGYTIVAYPLALLSAGIKAMNEVLVLAKDGKE
FEHLLATFEETKDVVGFPAYYVAEDKAAGDIEAFRE*
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mRNA from alignment at scaffold_3:1309389..1310570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_542 ID=mRNA_542|Name=jgi.p|Nanoce1779_2|577637|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp|location=Sequence derived from alignment at scaffold_3:1309389..1310570- (Nannochloropsis oceanica)
AAACTGCAGGAGGACAAGCACTGCTTGTTGCCACACCTCCATCAACGGCA
TCACCGCACCGTAAGCAGACACGACAGCCATGCCTACCATCGCGATGCAC
ATCCACTCATTTCTCATCTTTCCCCTCTTGGTCTCTTCCTTCGTCCTTCC
GACTACGATCCAACCCTCCCATGCCCGACGCCGCGGCGCCCTGACCTGCA
TGGCTGCCTCGCCCTCCCCCGCCTCCAAGCTCCGCACCCTCCTCACGCAA
AAGGACATTCTAGTCATGCCCTGCTGCTATGACGGGCTGACGGCCCGCCT
GGTCGAAATGCATGGCTTTCCTATCACGTTCATGACGGGTTTTGGCGTCT
CTGCTGCGCGAGGACACCCTGACACCCAGCTACTCAGCTACGGAGAAATG
GTGGACAACGCCCGTCAAATTTCCGAGGCTCTGCAAACGATTCCTTGCAT
CGGTGACGGCGACACTGGGTACGGAAATGCCGTCAATGTAAAGCGCACTG
TGAAGGGGTACGCTCAAGCTGGACTGGCGGGAATTATGATTGAAGATCAA
GTGGCACCTAAGAAGTGTGGGCACACCAAGGGAAAGAGCTGTGTGTCGCG
GGAAGAGGCTTTTGCCCGGGTGCAAGCAGCGGTGGACGCACGGAACGAGG
GGGCGGATATTTTGATCATGGCAAGGACCGACGCCAGGGCCGGGTTGGGG
ATGGACGAAGCGATTTATCGTTGTCAGAAATTTCGTGAGATCGGTGCGGA
TATCACCTTCTTGGAGGCGCCGCATACGGAGGAGGAAATGCGACGATACT
GCCAAGAGGTGGAGGGACCAAAGCTGGCGAACATGCTTCAGAATGGTAAG
ACGCCGTCGTTCCCCCCGGCGAAGTTGCAGGAGATCGGGTATACAATCGT
GGCGTACCCGTTGGCGTTGTTGAGTGCTGGAATCAAGGCGATGAATGAGG
TGTTGGTGCTTGCGAAGGATGGGAAGGAATTTGAGCATCTCTTGGCGACG
TTTGAGGAGACGAAGGACGTGGTGGGCTTTCCGGCTTATTATGTGGCGGA
GGACAAGGCGGCAGGCGACATTGAGGCGTTTCGGGAGTAAGAAGAGGAAG
AGGAGGAGGAAGAGGAGGAGGAGGAGGACGAGGAGAGGTTGAGAGGGTGA
GAGAGTGAGGAAGATTGGTTGGGGTCTTGAAG
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Coding sequence (CDS) from alignment at scaffold_3:1309389..1310570-

>mRNA_542 ID=mRNA_542|Name=jgi.p|Nanoce1779_2|577637|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_3:1309389..1310570- (Nannochloropsis oceanica)
ATGCCTACCATCGCGATGCACATCCACTCATTTCTCATCTTTCCCCTCTT
GGTCTCTTCCTTCGTCCTTCCGACTACGATCCAACCCTCCCATGCCCGAC
GCCGCGGCGCCCTGACCTGCATGGCTGCCTCGCCCTCCCCCGCCTCCAAG
CTCCGCACCCTCCTCACGCAAAAGGACATTCTAGTCATGCCCTGCTGCTA
TGACGGGCTGACGGCCCGCCTGGTCGAAATGCATGGCTTTCCTATCACGT
TCATGACGGGTTTTGGCGTCTCTGCTGCGCGAGGACACCCTGACACCCAG
CTACTCAGCTACGGAGAAATGGTGGACAACGCCCGTCAAATTTCCGAGGC
TCTGCAAACGATTCCTTGCATCGGTGACGGCGACACTGGGTACGGAAATG
CCGTCAATGTAAAGCGCACTGTGAAGGGGTACGCTCAAGCTGGACTGGCG
GGAATTATGATTGAAGATCAAGTGGCACCTAAGAAGTGTGGGCACACCAA
GGGAAAGAGCTGTGTGTCGCGGGAAGAGGCTTTTGCCCGGGTGCAAGCAG
CGGTGGACGCACGGAACGAGGGGGCGGATATTTTGATCATGGCAAGGACC
GACGCCAGGGCCGGGTTGGGGATGGACGAAGCGATTTATCGTTGTCAGAA
ATTTCGTGAGATCGGTGCGGATATCACCTTCTTGGAGGCGCCGCATACGG
AGGAGGAAATGCGACGATACTGCCAAGAGGTGGAGGGACCAAAGCTGGCG
AACATGCTTCAGAATGGTAAGACGCCGTCGTTCCCCCCGGCGAAGTTGCA
GGAGATCGGGTATACAATCGTGGCGTACCCGTTGGCGTTGTTGAGTGCTG
GAATCAAGGCGATGAATGAGGTGTTGGTGCTTGCGAAGGATGGGAAGGAA
TTTGAGCATCTCTTGGCGACGTTTGAGGAGACGAAGGACGTGGTGGGCTT
TCCGGCTTATTATGTGGCGGAGGACAAGGCGGCAGGCGACATTGAGGCGT
TTCGGGAGTAA
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Synonyms
Publications