jgi.p|Nanoce1779_2|592458, mRNA_5419 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592458
Unique NamemRNA_5419
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1009
Alignment locationscaffold_13:386852..387860 -

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Properties
Property NameValue
TranscriptId592544
TrackFilteredModels2
ProteinId592458
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:386852..387860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592458gene_5419Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592458mRNA_5419-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5419CDS_5419Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Nanoce1779_2|592458|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
ACAGCTACATAAGCTGCTCAGCTGATCTGTGCTGCTGTACATGCCCTGGC
CGCAGGCGCATTACACATTCGCCAGCTAGGCCTCTCTTAGACCTCCTCTC
CCACGCACATAATTACCCAACGTCGATTCTACCACACAAGGGGCACCTCT
TACACTCGAGTGGTGGTCAGCTGAGCATATGAGCAAGCGCTCGAAAAAAG
GCGCGGCTGCTGCCGCTGCTGCTGCAGCTGCAAAAGACGAGGAGGAGATG
GTGGAGGCGACGGACGTGGACGAGCAAGGAGAAGAAAGCAACCGGCCAAG
CAAGAAGAGCAAGTCGTCCCCGCTTAGCTCATACACGCTCAAGGGCGTGG
ATGTGGAAAAAGCGGAGGGGGACGAGACGGAAAGGGACGAGGATGAAAAC
AAGACGTCGCATGGTAACAGCCACAGCTCCAAGAGCAGCAAGTCCCCGCG
GGCTAGAAAATCCCCTTCTCCCTCACACAAATCCGACTCGGCTGACAAGC
CTTCTCGAACAGCATCACCAAGAGGCGAGCAGGACAGTGTAACTCTGGCA
GTGCCTATAACAAGTGCCTCGGCCAAAGCAATTCTTCCGTACAGCAGCCC
CAAGAACGGTTTATCCTCCAAATCACGACATGCCTCCCGCTCTCCCTCTC
CTTCCCTCCCTCCTCCCCCTCCTACTCTTCCTCCTGCAGTCCCTGGCCAG
ACCCTGGCAACAACACTCCCAAAACCCGACTCATCTGCTGCTCTCCTCCC
CAGTGTTGCTTCAGCTGAGTCTGTCCTTGTCCCTAAAAAGACAGCAGCTT
CCTTATCAAGTTTTGCCAAGCGCCTTCTTGTTCCCCGAGCTCCTCAGGAA
GTGGAGGTACCCGAGGCGATTCCATTGAACGATTTCATCTTGGAAGGCTT
TGGGCAGGAGCATGTGCATCGACCCACGGCTCAATTGGAGGAGGATGAGA
GCAGTGAGGAGGAGGAGGGAGGGGAGGAGGGAGGGGTCGCAAGTGTGGGC
AAGCCGGGG
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protein sequence of jgi.p|Nanoce1779_2|592458

>mRNA_5419-protein ID=mRNA_5419-protein|Name=jgi.p|Nanoce1779_2|592458|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MPPALPLLPSLLPLLLFLLQSLARPWQQHSQNPTHLLLSSPVLLQLSLSL
SLKRQQLPYQVLPSAFLFPELLRKWRYPRRFH*
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mRNA from alignment at scaffold_13:386852..387860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Nanoce1779_2|592458|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp|location=Sequence derived from alignment at scaffold_13:386852..387860- (Nannochloropsis oceanica)
ACAGCTACATAAGCTGCTCAGCTGATCTGTGCTGCTGTACATGCCCTGGC
CGCAGGCGCATTACACATTCGCCAGCTAGGCCTCTCTTAGACCTCCTCTC
CCACGCACATAATTACCCAACGTCGATTCTACCACACAAGGGGCACCTCT
TACACTCGAGTGGTGGTCAGCTGAGCATATGAGCAAGCGCTCGAAAAAAG
GCGCGGCTGCTGCCGCTGCTGCTGCAGCTGCAAAAGACGAGGAGGAGATG
GTGGAGGCGACGGACGTGGACGAGCAAGGAGAAGAAAGCAACCGGCCAAG
CAAGAAGAGCAAGTCGTCCCCGCTTAGCTCATACACGCTCAAGGGCGTGG
ATGTGGAAAAAGCGGAGGGGGACGAGACGGAAAGGGACGAGGATGAAAAC
AAGACGTCGCATGGTAACAGCCACAGCTCCAAGAGCAGCAAGTCCCCGCG
GGCTAGAAAATCCCCTTCTCCCTCACACAAATCCGACTCGGCTGACAAGC
CTTCTCGAACAGCATCACCAAGAGGCGAGCAGGACAGTGTAACTCTGGCA
GTGCCTATAACAAGTGCCTCGGCCAAAGCAATTCTTCCGTACAGCAGCCC
CAAGAACGGTTTATCCTCCAAATCACGACATGCCTCCCGCTCTCCCTCTC
CTTCCCTCCCTCCTCCCCCTCCTACTCTTCCTCCTGCAGTCCCTGGCCAG
ACCCTGGCAACAACACTCCCAAAACCCGACTCATCTGCTGCTCTCCTCCC
CAGTGTTGCTTCAGCTGAGTCTGTCCTTGTCCCTAAAAAGACAGCAGCTT
CCTTATCAAGTTTTGCCAAGCGCCTTCTTGTTCCCCGAGCTCCTCAGGAA
GTGGAGGTACCCGAGGCGATTCCATTGAACGATTTCATCTTGGAAGGCTT
TGGGCAGGAGCATGTGCATCGACCCACGGCTCAATTGGAGGAGGATGAGA
GCAGTGAGGAGGAGGAGGGAGGGGAGGAGGGAGGGGTCGCAAGTGTGGGC
AAGCCGGGG
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Coding sequence (CDS) from alignment at scaffold_13:386852..387860-

>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Nanoce1779_2|592458|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_13:386852..387860- (Nannochloropsis oceanica)
ATGCCTCCCGCTCTCCCTCTCCTTCCCTCCCTCCTCCCCCTCCTACTCTT
CCTCCTGCAGTCCCTGGCCAGACCCTGGCAACAACACTCCCAAAACCCGA
CTCATCTGCTGCTCTCCTCCCCAGTGTTGCTTCAGCTGAGTCTGTCCTTG
TCCCTAAAAAGACAGCAGCTTCCTTATCAAGTTTTGCCAAGCGCCTTCTT
GTTCCCCGAGCTCCTCAGGAAGTGGAGGTACCCGAGGCGATTCCATTGA
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Synonyms
Publications