jgi.p|Nanoce1779_2|592457, mRNA_5418 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592457
Unique NamemRNA_5418
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1226
Alignment locationscaffold_13:385624..386849 -

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Properties
Property NameValue
TranscriptId592543
TrackFilteredModels2
ProteinId592457
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:385624..386849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592457gene_5418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592457mRNA_5418-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5418CDS_5418Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5418 ID=mRNA_5418|Name=jgi.p|Nanoce1779_2|592457|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp
AGTGGGGTGTGTGGGGGACGATAAGGACGAGGATGGTGAGGAACGGAAGG
AGGACGCGCCCGTGCATACGTGTAAGACGCTACGGGCGTGGAACCTGTGG
TTTTCGAGCACGGAAGACACGTTGAGGAGGGCTTTCGGGAGGTTTGGGGA
GCTGGAGCGTTTTGAGATGTTGTATGACCGGGATACGAAGAAGTTTCGAG
GGGTGGTGATTGCCACGTATAAGAAGGCGAGTGACGCGGGGAGGGCTTTG
ACGGAAATGGAAGGAACAAGGATCGACAACCGGAATGTATTCTTGGAGGC
TTCGGAAAGGAAAAAGAGGGGGTCGATGGGGAAGGGGGAATCACGGTATT
TCCTCCTTGATAAGACCTTATTCTGCCGTCGGTGCCATGAGGTGGGACAT
ACAATGAAATTCTGCCCGAATCCCGCCAAGGCAAAGCCATGCACTATTTG
CGCGGCAATTGATGGAGGCCACGATGCTGACTCCTGCCCCGAGGTGGTGC
GTGCGGGGCCTGTGGGTGTGTTGTGTTTGCAGTGCGGTGCTTCGGGTCAC
GAGGACTCGGTGTGCGTTCGAAGGCTGAGGGCCACGGCGGAGTTGAAGGC
ACACACAAGTGTCCGATGCTTGAGATGTGCACAGATGGGGCATGGCGCAT
TGTGTGGACCTCATGCTGCTGCTGCTGCTGCTGCTGCTGATGGTGGGAGA
GGAGGAGGGAGGAAGTCTCCCAGGTATGTTTATTGCTTTCGGTGTGGATC
TTCGGGCCATTTTGGATATCACTGTGATTCGCGACCGCAGGGGGGAACGG
ATACACCAATGCTTCGTCGTCATTCCTACTCGGGGACGCACATTCGGTAC
AATGCCACGGACCCTCCCCCTCCTTTTCCTCCATCTGGACCTCCTGCCTA
CGAGGCCCCCTCCCATATCCCGCAACATCCTCTTGTCCCTGCTCCGATTG
CCCCGACCTACTATCTCCAACAGGGAAGGGGAGGCGAGACGGTTGGAGGG
AGGAGTAGTGGGGTCGATGATGGTGGTGGAGGAGGAGGAAGCCGTCACGA
CCGGAACCCCGCACTACCTCCCCAGTATCACGCCGCGCACGCTTCATCAG
GAACGTATTCCCCTCCACGACAGGATTATAAGCGGCGGAGATCGGGGGGA
AATGAACGTAACTGAGGAATAGGATGGTTGCGATGGAGGGGGAAGAGGGG
AGAAGGCGATGAAGTGTACAAGTAGG
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protein sequence of jgi.p|Nanoce1779_2|592457

>mRNA_5418-protein ID=mRNA_5418-protein|Name=jgi.p|Nanoce1779_2|592457|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASERKK
RGSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDG
GHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVR
CLRCAQMGHGALCGPHAAAAAAAADGGRGGGRKSPRYVYCFRCGSSGHFG
YHCDSRPQGGTDTPMLRRHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSH
IPQHPLVPAPIAPTYYLQQGRGGETVGGRSSGVDDGGGGGGSRHDRNPAL
PPQYHAAHASSGTYSPPRQDYKRRRSGGNER
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mRNA from alignment at scaffold_13:385624..386849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5418 ID=mRNA_5418|Name=jgi.p|Nanoce1779_2|592457|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_13:385624..386849- (Nannochloropsis oceanica)
AGTGGGGTGTGTGGGGGACGATAAGGACGAGGATGGTGAGGAACGGAAGG
AGGACGCGCCCGTGCATACGTGTAAGACGCTACGGGCGTGGAACCTGTGG
TTTTCGAGCACGGAAGACACGTTGAGGAGGGCTTTCGGGAGGTTTGGGGA
GCTGGAGCGTTTTGAGATGTTGTATGACCGGGATACGAAGAAGTTTCGAG
GGGTGGTGATTGCCACGTATAAGAAGGCGAGTGACGCGGGGAGGGCTTTG
ACGGAAATGGAAGGAACAAGGATCGACAACCGGAATGTATTCTTGGAGGC
TTCGGAAAGGAAAAAGAGGGGGTCGATGGGGAAGGGGGAATCACGGTATT
TCCTCCTTGATAAGACCTTATTCTGCCGTCGGTGCCATGAGGTGGGACAT
ACAATGAAATTCTGCCCGAATCCCGCCAAGGCAAAGCCATGCACTATTTG
CGCGGCAATTGATGGAGGCCACGATGCTGACTCCTGCCCCGAGGTGGTGC
GTGCGGGGCCTGTGGGTGTGTTGTGTTTGCAGTGCGGTGCTTCGGGTCAC
GAGGACTCGGTGTGCGTTCGAAGGCTGAGGGCCACGGCGGAGTTGAAGGC
ACACACAAGTGTCCGATGCTTGAGATGTGCACAGATGGGGCATGGCGCAT
TGTGTGGACCTCATGCTGCTGCTGCTGCTGCTGCTGCTGATGGTGGGAGA
GGAGGAGGGAGGAAGTCTCCCAGGTATGTTTATTGCTTTCGGTGTGGATC
TTCGGGCCATTTTGGATATCACTGTGATTCGCGACCGCAGGGGGGAACGG
ATACACCAATGCTTCGTCGTCATTCCTACTCGGGGACGCACATTCGGTAC
AATGCCACGGACCCTCCCCCTCCTTTTCCTCCATCTGGACCTCCTGCCTA
CGAGGCCCCCTCCCATATCCCGCAACATCCTCTTGTCCCTGCTCCGATTG
CCCCGACCTACTATCTCCAACAGGGAAGGGGAGGCGAGACGGTTGGAGGG
AGGAGTAGTGGGGTCGATGATGGTGGTGGAGGAGGAGGAAGCCGTCACGA
CCGGAACCCCGCACTACCTCCCCAGTATCACGCCGCGCACGCTTCATCAG
GAACGTATTCCCCTCCACGACAGGATTATAAGCGGCGGAGATCGGGGGGA
AATGAACGTAACTGAGGAATAGGATGGTTGCGATGGAGGGGGAAGAGGGG
AGAAGGCGATGAAGTGTACAAGTAGG
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Coding sequence (CDS) from alignment at scaffold_13:385624..386849-

>mRNA_5418 ID=mRNA_5418|Name=jgi.p|Nanoce1779_2|592457|organism=Nannochloropsis oceanica|type=CDS|length=995bp|location=Sequence derived from alignment at scaffold_13:385624..386849- (Nannochloropsis oceanica)
ATGTTGTATGACCGGGATACGAAGAAGTTTCGAGGGGTGGTGATTGCCAC
GTATAAGAAGGCGAGTGACGCGGGGAGGGCTTTGACGGAAATGGAAGGAA
CAAGGATCGACAACCGGAATGTATTCTTGGAGGCTTCGGAAAGGAAAAAG
AGGGGGTCGATGGGGAAGGGGGAATCACGGTATTTCCTCCTTGATAAGAC
CTTATTCTGCCGTCGGTGCCATGAGGTGGGACATACAATGAAATTCTGCC
CGAATCCCGCCAAGGCAAAGCCATGCACTATTTGCGCGGCAATTGATGGA
GGCCACGATGCTGACTCCTGCCCCGAGGTGGTGCGTGCGGGGCCTGTGGG
TGTGTTGTGTTTGCAGTGCGGTGCTTCGGGTCACGAGGACTCGGTGTGCG
TTCGAAGGCTGAGGGCCACGGCGGAGTTGAAGGCACACACAAGTGTCCGA
TGCTTGAGATGTGCACAGATGGGGCATGGCGCATTGTGTGGACCTCATGC
TGCTGCTGCTGCTGCTGCTGCTGATGGTGGGAGAGGAGGAGGGAGGAAGT
CTCCCAGGTATGTTTATTGCTTTCGGTGTGGATCTTCGGGCCATTTTGGA
TATCACTGTGATTCGCGACCGCAGGGGGGAACGGATACACCAATGCTTCG
TCGTCATTCCTACTCGGGGACGCACATTCGGTACAATGCCACGGACCCTC
CCCCTCCTTTTCCTCCATCTGGACCTCCTGCCTACGAGGCCCCCTCCCAT
ATCCCGCAACATCCTCTTGTCCCTGCTCCGATTGCCCCGACCTACTATCT
CCAACAGGGAAGGGGAGGCGAGACGGTTGGAGGGAGGAGTAGTGGGGTCG
ATGATGGTGGTGGAGGAGGAGGAAGCCGTCACGACCGGAACCCCGCACTA
CCTCCCCAGTATCACGCCGCGCACGCTTCATCAGGAACGTATTCCCCTCC
ACGACAGGATTATAAGCGGCGGAGATCGGGGGGAAATGAACGTAA
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Synonyms
Publications