jgi.p|Nanoce1779_2|566620, mRNA_5415 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566620
Unique NamemRNA_5415
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1230
Alignment locationscaffold_13:380373..381602 -

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Properties
Property NameValue
TranscriptId566706
TrackFilteredModels2
ProteinId566620
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:380373..381602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566620gene_5415Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5415CDS_5415Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566620mRNA_5415-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5415 ID=mRNA_5415|Name=jgi.p|Nanoce1779_2|566620|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGGGCCAGACCAAAGATCCCAGCATCGAGATCTACCACAAGCCCCGAGC
TCTTTCACCCTCCACCTTCGGTAGCAGCAGCAACAGCAGCGGTGGTAATG
GTTACAAGGGGCCTAAACCTCTCACCATTCCTGTAGCCCCCTCCTTCAAG
ACCGATACTCGAGCCCTTGCCCGTCGTGCCTCCCCCACCTACAACCAAAA
CAGTCTCGGCAGCAGCAGCAGTCAAGCAGAAAATTTCTCCAACAGCCACC
CCACTTCCTCCCTTCGAATCAATAGTAGCAGCAGCAGCTGTGGTGGGATG
GGCCTGCGCGAGTATGCACCAAAGTTTCCCTCTACCCGCACCTTGACCAT
CCCCCACACCCCCAATCTTTCTACTAAAACCCGTGCTGCCGTCCGGAAAG
GTTCCACAGGAGGCGTAGGAGGGACGGAGGGACGGAGGGAGGACCAGCAA
GAATGCAGGCAGCAATTTAAGGCTCGGCCATTGGATAGGCGTATATTGGA
GTCAACAGGGGAGATGGGTGTGCCTAAGGTGGCAAAGGGAGGGGTGACTC
AGCCACAGCCTTTCCATTTTTCGACCGATTCTAGACTACGCGTGCGGGCT
GCTCTAGGCTCGTCGGATTCGGCGGGGGAGCATGAGCAGCACCAGCAGCG
TCGTCATCATCAGGAAGGGAGATTGTCGGCGCCGAGGCCTTTTCAGCTGG
CAACAGAGCAACGGGGGCAACTGCACAATAGGGCATTTGAGGCTCGGATG
ACGCAAGACCGAGAGGCAGAGAAGGCCGCGCGGGAGGTCCACGCCCACCC
CGTCCCTCACTTCCACCAGCAGCAGGCTCACGTCCAGCCCCAGCCCAGCA
CCCGACTTTTGACTAAATTTGAAGAGTTCCATCTCTCTTCCAACCACCGA
CACGAAGATGCTCAAGGCATGTGGCAGAGGGATGTGGAGCGGTTGACGGA
TGAAGAGCGGAAGCAGGTCCAGGGATCCGGTGCTCGTCGTTTCCCTGTCA
TGACGTTTCAACGCGGCTTGGAGACTAAGCTATCCGAGCGAGAGCCGCTC
TTCCCTTACAGTCTCAACCTCAGTACCTCTGCTCGTGCGGGAGAGAGGAA
GGCGTTTGCAGCCGACAAGCAGGTCCGGAACGAGGAGGCCCACTTGGAGA
AAGAAGCACAGCGGAGGGCGAAGCAGAGGGTGGAGCAGGAGAAGATTCGG
CATTTGCGCACGACGCCTGTAGTAGATTAG
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protein sequence of jgi.p|Nanoce1779_2|566620

>mRNA_5415-protein ID=mRNA_5415-protein|Name=jgi.p|Nanoce1779_2|566620|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MGQTKDPSIEIYHKPRALSPSTFGSSSNSSGGNGYKGPKPLTIPVAPSFK
TDTRALARRASPTYNQNSLGSSSSQAENFSNSHPTSSLRINSSSSSCGGM
GLREYAPKFPSTRTLTIPHTPNLSTKTRAAVRKGSTGGVGGTEGRREDQQ
ECRQQFKARPLDRRILESTGEMGVPKVAKGGVTQPQPFHFSTDSRLRVRA
ALGSSDSAGEHEQHQQRRHHQEGRLSAPRPFQLATEQRGQLHNRAFEARM
TQDREAEKAAREVHAHPVPHFHQQQAHVQPQPSTRLLTKFEEFHLSSNHR
HEDAQGMWQRDVERLTDEERKQVQGSGARRFPVMTFQRGLETKLSEREPL
FPYSLNLSTSARAGERKAFAADKQVRNEEAHLEKEAQRRAKQRVEQEKIR
HLRTTPVVD*
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mRNA from alignment at scaffold_13:380373..381602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5415 ID=mRNA_5415|Name=jgi.p|Nanoce1779_2|566620|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp|location=Sequence derived from alignment at scaffold_13:380373..381602- (Nannochloropsis oceanica)
ATGGGCCAGACCAAAGATCCCAGCATCGAGATCTACCACAAGCCCCGAGC
TCTTTCACCCTCCACCTTCGGTAGCAGCAGCAACAGCAGCGGTGGTAATG
GTTACAAGGGGCCTAAACCTCTCACCATTCCTGTAGCCCCCTCCTTCAAG
ACCGATACTCGAGCCCTTGCCCGTCGTGCCTCCCCCACCTACAACCAAAA
CAGTCTCGGCAGCAGCAGCAGTCAAGCAGAAAATTTCTCCAACAGCCACC
CCACTTCCTCCCTTCGAATCAATAGTAGCAGCAGCAGCTGTGGTGGGATG
GGCCTGCGCGAGTATGCACCAAAGTTTCCCTCTACCCGCACCTTGACCAT
CCCCCACACCCCCAATCTTTCTACTAAAACCCGTGCTGCCGTCCGGAAAG
GTTCCACAGGAGGCGTAGGAGGGACGGAGGGACGGAGGGAGGACCAGCAA
GAATGCAGGCAGCAATTTAAGGCTCGGCCATTGGATAGGCGTATATTGGA
GTCAACAGGGGAGATGGGTGTGCCTAAGGTGGCAAAGGGAGGGGTGACTC
AGCCACAGCCTTTCCATTTTTCGACCGATTCTAGACTACGCGTGCGGGCT
GCTCTAGGCTCGTCGGATTCGGCGGGGGAGCATGAGCAGCACCAGCAGCG
TCGTCATCATCAGGAAGGGAGATTGTCGGCGCCGAGGCCTTTTCAGCTGG
CAACAGAGCAACGGGGGCAACTGCACAATAGGGCATTTGAGGCTCGGATG
ACGCAAGACCGAGAGGCAGAGAAGGCCGCGCGGGAGGTCCACGCCCACCC
CGTCCCTCACTTCCACCAGCAGCAGGCTCACGTCCAGCCCCAGCCCAGCA
CCCGACTTTTGACTAAATTTGAAGAGTTCCATCTCTCTTCCAACCACCGA
CACGAAGATGCTCAAGGCATGTGGCAGAGGGATGTGGAGCGGTTGACGGA
TGAAGAGCGGAAGCAGGTCCAGGGATCCGGTGCTCGTCGTTTCCCTGTCA
TGACGTTTCAACGCGGCTTGGAGACTAAGCTATCCGAGCGAGAGCCGCTC
TTCCCTTACAGTCTCAACCTCAGTACCTCTGCTCGTGCGGGAGAGAGGAA
GGCGTTTGCAGCCGACAAGCAGGTCCGGAACGAGGAGGCCCACTTGGAGA
AAGAAGCACAGCGGAGGGCGAAGCAGAGGGTGGAGCAGGAGAAGATTCGG
CATTTGCGCACGACGCCTGTAGTAGATTAG
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Coding sequence (CDS) from alignment at scaffold_13:380373..381602-

>mRNA_5415 ID=mRNA_5415|Name=jgi.p|Nanoce1779_2|566620|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_13:380373..381602- (Nannochloropsis oceanica)
ATGGGCCAGACCAAAGATCCCAGCATCGAGATCTACCACAAGCCCCGAGC
TCTTTCACCCTCCACCTTCGGTAGCAGCAGCAACAGCAGCGGTGGTAATG
GTTACAAGGGGCCTAAACCTCTCACCATTCCTGTAGCCCCCTCCTTCAAG
ACCGATACTCGAGCCCTTGCCCGTCGTGCCTCCCCCACCTACAACCAAAA
CAGTCTCGGCAGCAGCAGCAGTCAAGCAGAAAATTTCTCCAACAGCCACC
CCACTTCCTCCCTTCGAATCAATAGTAGCAGCAGCAGCTGTGGTGGGATG
GGCCTGCGCGAGTATGCACCAAAGTTTCCCTCTACCCGCACCTTGACCAT
CCCCCACACCCCCAATCTTTCTACTAAAACCCGTGCTGCCGTCCGGAAAG
GTTCCACAGGAGGCGTAGGAGGGACGGAGGGACGGAGGGAGGACCAGCAA
GAATGCAGGCAGCAATTTAAGGCTCGGCCATTGGATAGGCGTATATTGGA
GTCAACAGGGGAGATGGGTGTGCCTAAGGTGGCAAAGGGAGGGGTGACTC
AGCCACAGCCTTTCCATTTTTCGACCGATTCTAGACTACGCGTGCGGGCT
GCTCTAGGCTCGTCGGATTCGGCGGGGGAGCATGAGCAGCACCAGCAGCG
TCGTCATCATCAGGAAGGGAGATTGTCGGCGCCGAGGCCTTTTCAGCTGG
CAACAGAGCAACGGGGGCAACTGCACAATAGGGCATTTGAGGCTCGGATG
ACGCAAGACCGAGAGGCAGAGAAGGCCGCGCGGGAGGTCCACGCCCACCC
CGTCCCTCACTTCCACCAGCAGCAGGCTCACGTCCAGCCCCAGCCCAGCA
CCCGACTTTTGACTAAATTTGAAGAGTTCCATCTCTCTTCCAACCACCGA
CACGAAGATGCTCAAGGCATGTGGCAGAGGGATGTGGAGCGGTTGACGGA
TGAAGAGCGGAAGCAGGTCCAGGGATCCGGTGCTCGTCGTTTCCCTGTCA
TGACGTTTCAACGCGGCTTGGAGACTAAGCTATCCGAGCGAGAGCCGCTC
TTCCCTTACAGTCTCAACCTCAGTACCTCTGCTCGTGCGGGAGAGAGGAA
GGCGTTTGCAGCCGACAAGCAGGTCCGGAACGAGGAGGCCCACTTGGAGA
AAGAAGCACAGCGGAGGGCGAAGCAGAGGGTGGAGCAGGAGAAGATTCGG
CATTTGCGCACGACGCCTGTAGTAGATTAG
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Synonyms
Publications