jgi.p|Nanoce1779_2|592453, mRNA_5414 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592453
Unique Name	mRNA_5414
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1787
Alignment location	scaffold_13:378009..379795 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592539
Track	FilteredModels2
ProteinId	592453

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:378009..379795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592453	gene_5414	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592453	mRNA_5414-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5414	CDS_5414	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:378009..379795+
coding sequence from alignment at scaffold_13:378009..379795+

mRNA sequence

>mRNA_5414 ID=mRNA_5414|Name=jgi.p|Nanoce1779_2|592453|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
GGAGGACGCAAGGCTGGCGACGGGGGGGGCACGTGGAAGGGAAGGGAGGG
GAAATGACGGAGATGGGAACATGGTGGGGGAATATGGATCATTTTCGCCG
TCGACGCTGCCGTGTGATGATCGGCGGCCGCAGATTAGCACGAGGAGTAA
GGCAGTGTTGGAGCAATTTTTCCGGAAGCCTATAAGTAGTGAGGTGTATG
GGACAGCGTTTGTGACTGTAAGTACATTGGAAGCGACGGCCATCTTGAGG
CAGACGGTGACGTTCCAGAGGGCGTTTGAGATAATTGTGGAGGAGGCGCC
GTTGCCCGAGGATATTATGTGGAGTAACATCGACATTAATTTTGTGACGT
CTTACTTGAGGACGGCCTTGGGGCATTTACTCACACTGGCGATCACGATA
GCGTTCGCCTTTCCGACTGCCTTTATTTCGGCCTTGAACAGCGTGGAGAC
ACTGAAGAGAAAATTTCCTGGACTCAAGAAATGGTTGCCGACATCGGATG
AGGAGAATCGGTGGATCAATGCCGTGTTGGCCCTGATTGCCCCTTTGCTT
CTGCTCATCCTCCTCTCCATCATACCTCCCATTTTCGGGGTGTTGACGCG
GAGGGTTATCAAGGACTCGCGAACCATATCCGAATCGCATTACCACGTGT
TTAAGCGGTACTTCGGTTTTCTGTTTTACAATGCCCTGGTCATTTTTATG
GTCACCACTTCAGTGGTCGAGACCGTCAAGCGCGCCTACTCTAACCCTAT
TGAGGTCCTGAATCAAATTGGTAGCACCTTACCCAAGCCAGCCGCATTCT
TCATCAATTTTATCATCATCAAGGCTCTGTCGGGATTGCCTTCCGAGCTG
ATCCGCATGCCGGCCTACCTCACGCACATCGTCAAGGTGTTGTTTGTCGA
TGAACTCACGGAGCAAAACCGAGCCCAAGTCGTAATAGGCTGTCGAAGCC
TCACGCACCCGGGAGGATTTAATTATGGGAAATTCCTGGCTGAGCACACG
TTGTTGTTTGTCTACTCGATGTGTTATTCGTGCCTCGCCCCGCTCATCCT
CCCCGCGGGGTTCTTCTTTTTCGCGGGCGCGTTTTTGGTGTACAAGCAGC
AGTTGCTCTTTGTCTACGAACCTGAGTACGAGACGGGGGGAAAGATGTTC
AAGCTCATTCTTCGGTATACTTTTACGGGACTTTTCGTGACTCAATTTGT
GGTGTTTGTTATGCTTGTCACCAAGTTCGCCTACGAAGATATCCCCTTCT
TCCTCCCTTTGCCCATCGCCACCTACTTCGCCAAAGACCTCATCATTAAA
TGGTATGGCCGTCTGGAGAACCACGTCCCCCTCTCCCTCGCCGTTGCTAA
GGACGTGCGCTTCTGGCGTGGGCCTGGCAAGGTGCCTTCTTCCCGCACGG
GGGAGATTTTGGACCTAGGAAAAGATACGTTCCATCACCCTGCCGTGCGG
GCACCTTGGTGTGAAACGAGCCAGAATGTGCCCAGGGCCTCGGGGGGGAA
TTCGTTCGACATTATGATGCTGCAGGGAAGGGCGGGGGTGATTGGGAATC
CATATGATAGGCTGGACATCTCAGAAGCGAGCCTTGCGGGGGCAGCTAGT
GGGAAGCCTAAAACTGCAAGGAGGACGGGGTGGAGAAGGTGAGGTTTAAA
GTGGTAGAAGGGGAAAAATCGACAACATGTGATGAGTGCAACATGCAGGA
GGGATGAGAGAGGCCGCCTTCATTTTGGTCTGTAAATAGATTGAAAGCTG
GAAGAAAATAAGCTTAACCAAGGCAAGTTTTTGGTGA

protein sequence of jgi.p|Nanoce1779_2|592453

>mRNA_5414-protein ID=mRNA_5414-protein|Name=jgi.p|Nanoce1779_2|592453|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MVGEYGSFSPSTLPCDDRRPQISTRSKAVLEQFFRKPISSEVYGTAFVTV
STLEATAILRQTVTFQRAFEIIVEEAPLPEDIMWSNIDINFVTSYLRTAL
GHLLTLAITIAFAFPTAFISALNSVETLKRKFPGLKKWLPTSDEENRWIN
AVLALIAPLLLLILLSIIPPIFGVLTRRVIKDSRTISESHYHVFKRYFGF
LFYNALVIFMVTTSVVETVKRAYSNPIEVLNQIGSTLPKPAAFFINFIII
KALSGLPSELIRMPAYLTHIVKVLFVDELTEQNRAQVVIGCRSLTHPGGF
NYGKFLAEHTLLFVYSMCYSCLAPLILPAGFFFFAGAFLVYKQQLLFVYE
PEYETGGKMFKLILRYTFTGLFVTQFVVFVMLVTKFAYEDIPFFLPLPIA
TYFAKDLIIKWYGRLENHVPLSLAVAKDVRFWRGPGKVPSSRTGEILDLG
KDTFHHPAVRAPWCETSQNVPRASGGNSFDIMMLQGRAGVIGNPYDRLDI
SEASLAGAASGKPKTARRTGWRR*

mRNA from alignment at scaffold_13:378009..379795+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5414 ID=mRNA_5414|Name=jgi.p|Nanoce1779_2|592453|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at scaffold_13:378009..379795+ (Nannochloropsis oceanica)
GGAGGACGCAAGGCTGGCGACGGGGGGGGCACGTGGAAGGGAAGGGAGGG
GAAATGACGGAGATGGGAACATGGTGGGGGAATATGGATCATTTTCGCCG
TCGACGCTGCCGTGTGATGATCGGCGGCCGCAGATTAGCACGAGGAGTAA
GGCAGTGTTGGAGCAATTTTTCCGGAAGCCTATAAGTAGTGAGGTGTATG
GGACAGCGTTTGTGACTGTAAGTACATTGGAAGCGACGGCCATCTTGAGG
CAGACGGTGACGTTCCAGAGGGCGTTTGAGATAATTGTGGAGGAGGCGCC
GTTGCCCGAGGATATTATGTGGAGTAACATCGACATTAATTTTGTGACGT
CTTACTTGAGGACGGCCTTGGGGCATTTACTCACACTGGCGATCACGATA
GCGTTCGCCTTTCCGACTGCCTTTATTTCGGCCTTGAACAGCGTGGAGAC
ACTGAAGAGAAAATTTCCTGGACTCAAGAAATGGTTGCCGACATCGGATG
AGGAGAATCGGTGGATCAATGCCGTGTTGGCCCTGATTGCCCCTTTGCTT
CTGCTCATCCTCCTCTCCATCATACCTCCCATTTTCGGGGTGTTGACGCG
GAGGGTTATCAAGGACTCGCGAACCATATCCGAATCGCATTACCACGTGT
TTAAGCGGTACTTCGGTTTTCTGTTTTACAATGCCCTGGTCATTTTTATG
GTCACCACTTCAGTGGTCGAGACCGTCAAGCGCGCCTACTCTAACCCTAT
TGAGGTCCTGAATCAAATTGGTAGCACCTTACCCAAGCCAGCCGCATTCT
TCATCAATTTTATCATCATCAAGGCTCTGTCGGGATTGCCTTCCGAGCTG
ATCCGCATGCCGGCCTACCTCACGCACATCGTCAAGGTGTTGTTTGTCGA
TGAACTCACGGAGCAAAACCGAGCCCAAGTCGTAATAGGCTGTCGAAGCC
TCACGCACCCGGGAGGATTTAATTATGGGAAATTCCTGGCTGAGCACACG
TTGTTGTTTGTCTACTCGATGTGTTATTCGTGCCTCGCCCCGCTCATCCT
CCCCGCGGGGTTCTTCTTTTTCGCGGGCGCGTTTTTGGTGTACAAGCAGC
AGTTGCTCTTTGTCTACGAACCTGAGTACGAGACGGGGGGAAAGATGTTC
AAGCTCATTCTTCGGTATACTTTTACGGGACTTTTCGTGACTCAATTTGT
GGTGTTTGTTATGCTTGTCACCAAGTTCGCCTACGAAGATATCCCCTTCT
TCCTCCCTTTGCCCATCGCCACCTACTTCGCCAAAGACCTCATCATTAAA
TGGTATGGCCGTCTGGAGAACCACGTCCCCCTCTCCCTCGCCGTTGCTAA
GGACGTGCGCTTCTGGCGTGGGCCTGGCAAGGTGCCTTCTTCCCGCACGG
GGGAGATTTTGGACCTAGGAAAAGATACGTTCCATCACCCTGCCGTGCGG
GCACCTTGGTGTGAAACGAGCCAGAATGTGCCCAGGGCCTCGGGGGGGAA
TTCGTTCGACATTATGATGCTGCAGGGAAGGGCGGGGGTGATTGGGAATC
CATATGATAGGCTGGACATCTCAGAAGCGAGCCTTGCGGGGGCAGCTAGT
GGGAAGCCTAAAACTGCAAGGAGGACGGGGTGGAGAAGGTGAGGTTTAAA
GTGGTAGAAGGGGAAAAATCGACAACATGTGATGAGTGCAACATGCAGGA
GGGATGAGAGAGGCCGCCTTCATTTTGGTCTGTAAATAGATTGAAAGCTG
GAAGAAAATAAGCTTAACCAAGGCAAGTTTTTGGTGA

Coding sequence (CDS) from alignment at scaffold_13:378009..379795+

>mRNA_5414 ID=mRNA_5414|Name=jgi.p|Nanoce1779_2|592453|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_13:378009..379795+ (Nannochloropsis oceanica)
ATGGTGGGGGAATATGGATCATTTTCGCCGTCGACGCTGCCGTGTGATGA
TCGGCGGCCGCAGATTAGCACGAGGAGTAAGGCAGTGTTGGAGCAATTTT
TCCGGAAGCCTATAAGTAGTGAGGTGTATGGGACAGCGTTTGTGACTGTA
AGTACATTGGAAGCGACGGCCATCTTGAGGCAGACGGTGACGTTCCAGAG
GGCGTTTGAGATAATTGTGGAGGAGGCGCCGTTGCCCGAGGATATTATGT
GGAGTAACATCGACATTAATTTTGTGACGTCTTACTTGAGGACGGCCTTG
GGGCATTTACTCACACTGGCGATCACGATAGCGTTCGCCTTTCCGACTGC
CTTTATTTCGGCCTTGAACAGCGTGGAGACACTGAAGAGAAAATTTCCTG
GACTCAAGAAATGGTTGCCGACATCGGATGAGGAGAATCGGTGGATCAAT
GCCGTGTTGGCCCTGATTGCCCCTTTGCTTCTGCTCATCCTCCTCTCCAT
CATACCTCCCATTTTCGGGGTGTTGACGCGGAGGGTTATCAAGGACTCGC
GAACCATATCCGAATCGCATTACCACGTGTTTAAGCGGTACTTCGGTTTT
CTGTTTTACAATGCCCTGGTCATTTTTATGGTCACCACTTCAGTGGTCGA
GACCGTCAAGCGCGCCTACTCTAACCCTATTGAGGTCCTGAATCAAATTG
GTAGCACCTTACCCAAGCCAGCCGCATTCTTCATCAATTTTATCATCATC
AAGGCTCTGTCGGGATTGCCTTCCGAGCTGATCCGCATGCCGGCCTACCT
CACGCACATCGTCAAGGTGTTGTTTGTCGATGAACTCACGGAGCAAAACC
GAGCCCAAGTCGTAATAGGCTGTCGAAGCCTCACGCACCCGGGAGGATTT
AATTATGGGAAATTCCTGGCTGAGCACACGTTGTTGTTTGTCTACTCGAT
GTGTTATTCGTGCCTCGCCCCGCTCATCCTCCCCGCGGGGTTCTTCTTTT
TCGCGGGCGCGTTTTTGGTGTACAAGCAGCAGTTGCTCTTTGTCTACGAA
CCTGAGTACGAGACGGGGGGAAAGATGTTCAAGCTCATTCTTCGGTATAC
TTTTACGGGACTTTTCGTGACTCAATTTGTGGTGTTTGTTATGCTTGTCA
CCAAGTTCGCCTACGAAGATATCCCCTTCTTCCTCCCTTTGCCCATCGCC
ACCTACTTCGCCAAAGACCTCATCATTAAATGGTATGGCCGTCTGGAGAA
CCACGTCCCCCTCTCCCTCGCCGTTGCTAAGGACGTGCGCTTCTGGCGTG
GGCCTGGCAAGGTGCCTTCTTCCCGCACGGGGGAGATTTTGGACCTAGGA
AAAGATACGTTCCATCACCCTGCCGTGCGGGCACCTTGGTGTGAAACGAG
CCAGAATGTGCCCAGGGCCTCGGGGGGGAATTCGTTCGACATTATGATGC
TGCAGGGAAGGGCGGGGGTGATTGGGAATCCATATGATAGGCTGGACATC
TCAGAAGCGAGCCTTGCGGGGGCAGCTAGTGGGAAGCCTAAAACTGCAAG
GAGGACGGGGTGGAGAAGGTGA

Synonyms

Publications