jgi.p|Nanoce1779_2|592447, mRNA_5411 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592447
Unique NamemRNA_5411
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1139
Alignment locationscaffold_13:374269..375407 -

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Properties
Property NameValue
TranscriptId592533
TrackFilteredModels2
ProteinId592447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:374269..375407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592447gene_5411Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592447mRNA_5411-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5411CDS_5411Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Nanoce1779_2|592447|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
ACAGGGTAGGCCACATGAGTCAGAATTGGCACCTAAGACAACAGCGACAG
CGCCTTCTTAATTCTTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACT
GCTCCACTCCCTCCCTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGG
GAGGGGAAAGTGGCAGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACC
GTCCTCGGCAGCCGATACATGGAAGAGATTCGATGCTTGGGGACGGTTGT
GAAGCACGACGAGGTGAATGCAGGGTTATGGCTTGATGATGGGACGGGAG
TCGTCTATGTGCAGCTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAG
CTGTGTGAGGTGGTGGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCG
TGGAAATCAACAGCAGCAGCCGCAGATATCTGAAGTCCACCGCATCATCG
CGGCTCAGCGCGTGTTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTC
ACCTTGTCGACCATAGACCTCTTCCGCACCGTTTATCTGGCCCACACCCC
GCCTCTGTCTTTGCATGAGACCCCGTGTCATGTCGCAGCAAATAGACCAT
CTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCT
GCACCGCCCTCCCCCTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATC
CGCATCGATCGATGGCATGATCCTAAGCCACATTTTGCACTTACAATCTA
ACGGGAAAGCCTTTAACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTT
CCCTCCCTGCCTGAATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGG
GCTGGTCTATTGCATGCAAGGGCGTTTTTACCCGCTTTGACAATACCGTG
GAGAGAAACGGTAGCACCCGAGAGTGAGCATACATAAGGGCGGATAAATG
GAAGCGTTACACAGAAAGCACGATGTGGAGTCTAATAAGAAGAAAAATAA
GACGATCAAGAGGAAGGACCAGTGTCTGTTGAAGATAGACAGACGGTGAT
TGTAGATAGACAGAGGGCGATTAAGAAATGGACTGAGGATAGCTGGTTGA
CTGTGGACAGAGAAAGCAAATGAAACGAACCATACTGAA
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protein sequence of jgi.p|Nanoce1779_2|592447

>mRNA_5411-protein ID=mRNA_5411-protein|Name=jgi.p|Nanoce1779_2|592447|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSQNWHLRQQRQRLLNSLPAAPARLFIKLLHSLPLEKGEREQEVKGGESG
SSIDPAKATCRTVLGSRYMEEIRCLGTVVKHDEVNAGLWLDDGTGVVYVQ
LDKQALLPAVGELCEVVGPMKLVGLSIDRGNQQQQPQISEVHRIIAAQRV
FIPQDPNFETAFTLSTIDLFRTVYLAHTPPLSLHETPCHVAANRPSPSPP
SPPSPPPPQASSAPPSPSLPLSSSLSSSSASIDGMILSHILHLQSNGKAF
NGVGVQALQGLVPSLPELEASLSRLQMEGLVYCMQGRFYPL*
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mRNA from alignment at scaffold_13:374269..375407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Nanoce1779_2|592447|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_13:374269..375407- (Nannochloropsis oceanica)
ACAGGGTAGGCCACATGAGTCAGAATTGGCACCTAAGACAACAGCGACAG
CGCCTTCTTAATTCTTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACT
GCTCCACTCCCTCCCTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGG
GAGGGGAAAGTGGCAGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACC
GTCCTCGGCAGCCGATACATGGAAGAGATTCGATGCTTGGGGACGGTTGT
GAAGCACGACGAGGTGAATGCAGGGTTATGGCTTGATGATGGGACGGGAG
TCGTCTATGTGCAGCTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAG
CTGTGTGAGGTGGTGGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCG
TGGAAATCAACAGCAGCAGCCGCAGATATCTGAAGTCCACCGCATCATCG
CGGCTCAGCGCGTGTTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTC
ACCTTGTCGACCATAGACCTCTTCCGCACCGTTTATCTGGCCCACACCCC
GCCTCTGTCTTTGCATGAGACCCCGTGTCATGTCGCAGCAAATAGACCAT
CTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCT
GCACCGCCCTCCCCCTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATC
CGCATCGATCGATGGCATGATCCTAAGCCACATTTTGCACTTACAATCTA
ACGGGAAAGCCTTTAACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTT
CCCTCCCTGCCTGAATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGG
GCTGGTCTATTGCATGCAAGGGCGTTTTTACCCGCTTTGACAATACCGTG
GAGAGAAACGGTAGCACCCGAGAGTGAGCATACATAAGGGCGGATAAATG
GAAGCGTTACACAGAAAGCACGATGTGGAGTCTAATAAGAAGAAAAATAA
GACGATCAAGAGGAAGGACCAGTGTCTGTTGAAGATAGACAGACGGTGAT
TGTAGATAGACAGAGGGCGATTAAGAAATGGACTGAGGATAGCTGGTTGA
CTGTGGACAGAGAAAGCAAATGAAACGAACCATACTGAA
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Coding sequence (CDS) from alignment at scaffold_13:374269..375407-

>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Nanoce1779_2|592447|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_13:374269..375407- (Nannochloropsis oceanica)
ATGAGTCAGAATTGGCACCTAAGACAACAGCGACAGCGCCTTCTTAATTC
TTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACTGCTCCACTCCCTCC
CTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGGGAGGGGAAAGTGGC
AGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACCGTCCTCGGCAGCCG
ATACATGGAAGAGATTCGATGCTTGGGGACGGTTGTGAAGCACGACGAGG
TGAATGCAGGGTTATGGCTTGATGATGGGACGGGAGTCGTCTATGTGCAG
CTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAGCTGTGTGAGGTGGT
GGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCGTGGAAATCAACAGC
AGCAGCCGCAGATATCTGAAGTCCACCGCATCATCGCGGCTCAGCGCGTG
TTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTCACCTTGTCGACCAT
AGACCTCTTCCGCACCGTTTATCTGGCCCACACCCCGCCTCTGTCTTTGC
ATGAGACCCCGTGTCATGTCGCAGCAAATAGACCATCTCCTTCTCCTCCT
TCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCTGCACCGCCCTCCCC
CTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATCCGCATCGATCGATG
GCATGATCCTAAGCCACATTTTGCACTTACAATCTAACGGGAAAGCCTTT
AACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTTCCCTCCCTGCCTGA
ATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGGGCTGGTCTATTGCA
TGCAAGGGCGTTTTTACCCGCTTTGA
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Synonyms
Publications