jgi.p|Nanoce1779_2|563448, mRNA_541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563448
Unique NamemRNA_541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_3:1308846..1309199 +

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Properties
Property NameValue
TranscriptId563534
TrackFilteredModels2
ProteinId563448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1308846..1309199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563448gene_541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563448mRNA_541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_541CDS_541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_541 ID=mRNA_541|Name=jgi.p|Nanoce1779_2|563448|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGAAAAACGTCGGTCAGAGAAAGACAGCAAATGCGGAGATAGAGAGAGA
AACGGATCGGTTGAAAGCTGTCGAGAGAGAGAGAGATGGCGTTTCGAGAG
CGCCGCGACACAGTGTGGTTGAAAAGATCTACATACAAGGGCGGCAAATG
AGAAAATATTTGAAAGAGCAGGGAGGACGCGAGAGGGAAGGAATGCTCTT
TATAGTGGTATCGATGTGTGTATGTGTGGGTGGGTCCAAGAGGCATGGGC
GAGACATGACGAAGAAAGAGAGAGAGATATTGACAAGATCAACGATTGAA
AATGTGTGCGCGGGCATCAAGAATAAACAAGAAAAGAACGACTTACACCA
TTGA
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protein sequence of jgi.p|Nanoce1779_2|563448

>mRNA_541-protein ID=mRNA_541-protein|Name=jgi.p|Nanoce1779_2|563448|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MKNVGQRKTANAEIERETDRLKAVERERDGVSRAPRHSVVEKIYIQGRQM
RKYLKEQGGREREGMLFIVVSMCVCVGGSKRHGRDMTKKEREILTRSTIE
NVCAGIKNKQEKNDLHH*
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mRNA from alignment at scaffold_3:1308846..1309199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_541 ID=mRNA_541|Name=jgi.p|Nanoce1779_2|563448|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at scaffold_3:1308846..1309199+ (Nannochloropsis oceanica)
ATGAAAAACGTCGGTCAGAGAAAGACAGCAAATGCGGAGATAGAGAGAGA
AACGGATCGGTTGAAAGCTGTCGAGAGAGAGAGAGATGGCGTTTCGAGAG
CGCCGCGACACAGTGTGGTTGAAAAGATCTACATACAAGGGCGGCAAATG
AGAAAATATTTGAAAGAGCAGGGAGGACGCGAGAGGGAAGGAATGCTCTT
TATAGTGGTATCGATGTGTGTATGTGTGGGTGGGTCCAAGAGGCATGGGC
GAGACATGACGAAGAAAGAGAGAGAGATATTGACAAGATCAACGATTGAA
AATGTGTGCGCGGGCATCAAGAATAAACAAGAAAAGAACGACTTACACCA
TTGA
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Coding sequence (CDS) from alignment at scaffold_3:1308846..1309199+

>mRNA_541 ID=mRNA_541|Name=jgi.p|Nanoce1779_2|563448|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_3:1308846..1309199+ (Nannochloropsis oceanica)
ATGAAAAACGTCGGTCAGAGAAAGACAGCAAATGCGGAGATAGAGAGAGA
AACGGATCGGTTGAAAGCTGTCGAGAGAGAGAGAGATGGCGTTTCGAGAG
CGCCGCGACACAGTGTGGTTGAAAAGATCTACATACAAGGGCGGCAAATG
AGAAAATATTTGAAAGAGCAGGGAGGACGCGAGAGGGAAGGAATGCTCTT
TATAGTGGTATCGATGTGTGTATGTGTGGGTGGGTCCAAGAGGCATGGGC
GAGACATGACGAAGAAAGAGAGAGAGATATTGACAAGATCAACGATTGAA
AATGTGTGCGCGGGCATCAAGAATAAACAAGAAAAGAACGACTTACACCA
TTGA
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Synonyms
Publications