|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 631126 |
| Track | FilteredModels2 |
| ProteinId | 631040 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:370555..372550 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5409 ID=mRNA_5409|Name=jgi.p|Nanoce1779_2|631040|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
ACAGGCAGACGAAGCACCACCAATGCTGTCGCAATGGCTCCCTGACCCAG
GTACGGAAGCATCTTCGGCAGAGAGTGTCCTCCCTTTTGCGAGGAGCGGA
GGCAGCCGGCCTGGGCATGGTGGGCTCGCTGGTGGTGGCACTGGGAATGG
GGTAAGGGGTAGAGATGGGGGCCCTGCCCGCGGGGGGGGGCTTGACCTCG
ACCCGAGTAAGGTGGTGGAAGCACATCGGCACGCAACGCAGGCAGAGGAG
CTAAGGCGAGACGGACGATTGCTCGAAGCGTTGCAGGAGCACTTGGAGGC
ATCACATTGTTTCCTCGAGGCGGCGGAGCTGCTGCGCGATGCGCATGGCG
TGACGGGCGCTGCCCTTGTCCTCCTCTCCGACGGACATGCACGCCAAGCC
CATACACTCCAACAACTTCTACAAAAAGGAAAGACCGCTGCCTCCGAGAC
ACTTCCCAAGACCACGCCCCGTCTTGTCCCCATGCCTCCTCCTCAACCCA
AAGGGTTGGCTGCCGAAGGCTCCATGTACTCCTCGACCATGGTGTGCAGT
ACCGCCAGTCTCGCGGGCACCAATGCAACAGCAGTGACAGCAGGCACCGC
TGCCGTGGATGATATGCTGGCGTTGGAGCGAGCATTGCAAGCTATCGGCT
CTCAGCCTCTGTTTTCGAGTGGTGCGTACCAAGGAGGGTGGGCGGGTGGA
GGGCTCAATGCAGGGCCTGGTGGACGTTATTTGTCATCGACCTTGGGCGA
TTCCTTTTTCCTGGTAAGCAACCGCCATGCTGCTGCAAGGGAGGGGGCGT
CGATGAATTGGGAGGGAGGGAATAGCGCCGTGAGCTCTTCCAGGCAGGCG
TTACCCCCTAGGGGAGGCGCCGTAACAGGGGCGGTATGTGGTATTGGTGC
TCAGGGAGTGTCGGGCTTACCTCCCCGAGCAGTAGGAGGAGGAGGGGAAA
CCACAGAACGAGCTTCCCGCATTACCGAAAGTGGGGGCACGAATTTGTCG
TCATCGAGTAGGAGTCCTCCTTCCTCAGTGGCAGAAGATTTGGTGTCGGC
ACCCTCCTCCTCCTCCTCTACCGCTGGAGGTGGTAGTGGTGGTCGTGGGG
GGGTTGGCTTTTTGGAAGGTGTAGAAGCGATGCAGCAAGATGAGGTGATG
CGTCTGCTTGGATGTATGAAAACGTTGGGGGATGAGAATGCAATGTTGAT
CAAGCAGGTGGAGGATGGGGGGCGAGTGCGACAGGAAAACGAGAGGTTGA
GGAGAGAGATGGGTGAGTTTCAGGAGCAGTATGCGAAGAAGTTTCGAGAT
CTGAGATCGGCACTGGAAGAGTTTAGGCGTAAATATCCGAGTGAGAACAA
TCCGACGAATCACGTGGCGTCAGCAAGGGAGACGGCGCGTGTGAAGACGC
TGGAGAGTGAGATAGAGAGTTTGATCGTGCGTCTGAACAGGGAGAGGGAA
GCCGGGAGGAAGAAGGATGCGATGATTGCCAAATATCAAGCATGGTACAA
TAAGCTCAGGCAAAGCGTTGTGCATAAAAAGGGTGGCGTGGTAGGAGATG
GTGGTTTGGGAAACCAGCAGCAGCAGATGCAGCAGCAGCCGCAGCCGAGG
GTAGGGGGCGCTAGAGCTGGCAGCAGCAGCAGCAGCAGCATTCGTCCGCC
ACAAGCGCGATAGGGCAAGATATTCTATGATCAAAATTATATACACGAAA
CATGTAAGAAAAGAGAAGAAGAACAGGAATGTACAGACTCACAACAGAAA
GAGCCGAGAGCCGAAGTTGAAAAAGAAATAGCGCGACTGCCACATGTCTC back to topprotein sequence of jgi.p|Nanoce1779_2|631040 >mRNA_5409-protein ID=mRNA_5409-protein|Name=jgi.p|Nanoce1779_2|631040|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MLSQWLPDPGTEASSAESVLPFARSGGSRPGHGGLAGGGTGNGVRGRDGG
PARGGGLDLDPSKVVEAHRHATQAEELRRDGRLLEALQEHLEASHCFLEA
AELLRDAHGVTGAALVLLSDGHARQAHTLQQLLQKGKTAASETLPKTTPR
LVPMPPPQPKGLAAEGSMYSSTMVCSTASLAGTNATAVTAGTAAVDDMLA
LERALQAIGSQPLFSSGAYQGGWAGGGLNAGPGGRYLSSTLGDSFFLVSN
RHAAAREGASMNWEGGNSAVSSSRQALPPRGGAVTGAVCGIGAQGVSGLP
PRAVGGGGETTERASRITESGGTNLSSSSRSPPSSVAEDLVSAPSSSSST
AGGGSGGRGGVGFLEGVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGG
RVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVAS
ARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVV
HKKGGVVGDGGLGNQQQQMQQQPQPRVGGARAGSSSSSSIRPPQAR* back to topmRNA from alignment at scaffold_13:370555..372550- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5409 ID=mRNA_5409|Name=jgi.p|Nanoce1779_2|631040|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp|location=Sequence derived from alignment at scaffold_13:370555..372550- (Nannochloropsis oceanica)
ACAGGCAGACGAAGCACCACCAATGCTGTCGCAATGGCTCCCTGACCCAG
GTACGGAAGCATCTTCGGCAGAGAGTGTCCTCCCTTTTGCGAGGAGCGGA
GGCAGCCGGCCTGGGCATGGTGGGCTCGCTGGTGGTGGCACTGGGAATGG
GGTAAGGGGTAGAGATGGGGGCCCTGCCCGCGGGGGGGGGCTTGACCTCG
ACCCGAGTAAGGTGGTGGAAGCACATCGGCACGCAACGCAGGCAGAGGAG
CTAAGGCGAGACGGACGATTGCTCGAAGCGTTGCAGGAGCACTTGGAGGC
ATCACATTGTTTCCTCGAGGCGGCGGAGCTGCTGCGCGATGCGCATGGCG
TGGTACGTGCCAATAATGATTTTGTGGGGAGAGATATGTGTGTGTAGACC
TTGCTATGCTCGAGGGAGGAACAAGGAGAGACCGTATGCTAAGCGCTTAT
TGACGTGCAGCAGTTTCCTTAGACTTCTTACTTAAACAGCACCCCTTTCT
GTCTCATCCCCCTCTTATCCTTTTCCTACTCCACTCCCCTCTACTTAGAC
GGGCGCTGCCCTTGTCCTCCTCTCCGACGGACATGCACGCCAAGCCCATA
CACTCCAACAACTTCTACAAAAAGGAAAGACCGCTGCCTCCGAGACACTT
CCCAAGACCACGCCCCGTCTTGTCCCCATGCCTCCTCCTCAACCCAAAGG
GTTGGCTGCCGAAGGCTCCATGTACTCCTCGACCATGGTGTGCAGTACCG
CCAGTCTCGCGGGCACCAATGCAACAGCAGTGACAGCAGGCACCGCTGCC
GTGGATGATATGCTGGCGTTGGAGCGAGCATTGCAAGCTATCGGCTCTCA
GCCTCTGTTTTCGAGTGGTGCGTACCAAGGAGGGTGGGCGGGTGGAGGGC
TCAATGCAGGGCCTGGTGGACGTTATTTGTCATCGACCTTGGGCGATTCC
TTTTTCCTGGTAAGCAACCGCCATGCTGCTGCAAGGGAGGGGGCGTCGAT
GAATTGGGAGGGAGGGAATAGCGCCGTGAGCTCTTCCAGGCAGGCGTTAC
CCCCTAGGGGAGGCGCCGTAACAGGGGCGGTATGTGGTATTGGTGCTCAG
GGAGTGTCGGGCTTACCTCCCCGAGCAGTAGGAGGAGGAGGGGAAACCAC
AGAACGAGCTTCCCGCATTACCGAAAGTGGGGGCACGAATTTGTCGTCAT
CGAGTAGGAGTCCTCCTTCCTCAGTGGCAGAAGATTTGGTGTCGGCACCC
TCCTCCTCCTCCTCTACCGCTGGAGGTGGTAGTGGTGGTCGTGGGGGGGT
TGGCTTTTTGGAAGGTGTAGAAGCGATGCAGCAAGATGAGGTGATGCGTC
TGCTTGGATGTATGAAAACGTTGGGGGATGAGAATGCAATGTTGATCAAG
CAGGTGGAGGATGGGGGGCGAGTGCGACAGGAAAACGAGAGGTTGAGGAG
AGAGATGGGTGAGTTTCAGGAGCAGTATGCGAAGAAGTTTCGAGATCTGA
GATCGGCACTGGAAGAGTTTAGGCGTAAATATCCGAGTGAGAACAATCCG
ACGAATCACGTGGCGTCAGCAAGGGAGACGGCGCGTGTGAAGACGCTGGA
GAGTGAGATAGAGAGTTTGATCGTGCGTCTGAACAGGGAGAGGGAAGCCG
GGAGGAAGAAGGATGCGATGATTGCCAAATATCAAGCATGGTACAATAAG
CTCAGGCAAAGCGTTGTGCATAAAAAGGGTGGCGTGGTAGGAGATGGTGG
TTTGGGAAACCAGCAGCAGCAGATGCAGCAGCAGCCGCAGCCGAGGGTAG
GGGGCGCTAGAGCTGGCAGCAGCAGCAGCAGCAGCATTCGTCCGCCACAA
GCGCGATAGGGCAAGATATTCTATGATCAAAATTATATACACGAAACATG
TAAGAAAAGAGAAGAAGAACAGGAATGTACAGACTCACAACAGAAAGAGC
CGAGAGCCGAAGTTGAAAAAGAAATAGCGCGACTGCCACATGTCTC back to topCoding sequence (CDS) from alignment at scaffold_13:370555..372550- >mRNA_5409 ID=mRNA_5409|Name=jgi.p|Nanoce1779_2|631040|organism=Nannochloropsis oceanica|type=CDS|length=3282bp|location=Sequence derived from alignment at scaffold_13:370555..372550- (Nannochloropsis oceanica)
ACGGGCGCTGCCCTTGTCCTCCTCTCCGACGGACATGCACGCCAAGCCCA
TACACTCCAACAACTTCTACAAAAAGGAAAGACCGCTGCCTCCGAGACAC
TTCCCAAGACCACGCCCCGTCTTGTCCCCATGCCTCCTCCTCAACCCAAA
GGGTTGGCTGCCGAAGGCTCCATGTACTCCTCGACCATGGTGTGCAGTAC
CGCCAGTCTCGCGGGCACCAATGCAACAGCAGTGACAGCAGGCACCGCTG
CCGTGGATGATATGCTGGCGTTGGAGCGAGCATTGCAAGCTATCGGCTCT
CAGCCTCTGTTTTCGAGTGGTGCGTACCAAGGAGGGTGGGCGGGTGGAGG
GCTCAATGCAGGGCCTGGTGGACGTTATTTGTCATCGACCTTGGGCGATT
CCTTTTTCCTGGTAAGCAACCGCCATGCTGCTGCAAGGGAGGGGGCGTCG
ATGAATTGGGAGGGAGGGAATAGCGCCGTGAGCTCTTCCAGGCAGGCGTT
ACCCCCTAGGGGAGGCGCCGTAACAGGGGCGGTATGTGGTATTGGTGCTC
AGGGAGTGTCGGGCTTACCTCCCCGAGCAGTAGGAGGAGGAGGGGAAACC
ACAGAACGAGCTTCCCGCATTACCGAAAGTGGGGGCACGAATTTGTCGTC
ATCGAGTAGGAGTCCTCCTTCCTCAGTGGCAGAAGATTTGGTGTCGGCAC
CCTCCTCCTCCTCCTCTACCGCTGGAGGTGGTAGTGGTGGTCGTGGGGGG
GTTGGCTTTTTGGAAGGTGTAGAAGCGATGCAGCAAGATGAGGTGATGCG
TCTGCTTGGATGTATGAAAACGTTGGGGGATGAGAATGCAATGTTGATCA
AGCAGGTGGAGGATGGGGGGCGAGTGCGACAGGAAAACGAGAGGTTGAGG
AGAGAGATGGGTGAGTTTCAGGAGCAGTATGCGAAGAAGTTTCGAGATCT
GAGATCGGCACTGGAAGAGTTTAGGCGTAAATATCCGAGTGAGAACAATC
CGACGAATCACGTGGCGTCAGCAAGGGAGACGGCGCGTGTGAAGACGCTG
GAGAGTGAGATAGAGAGTTTGATCGTGCGTCTGAACAGGGAGAGGGAAGC
CGGGAGGAAGAAGGATGCGATGATTGCCAAATATCAAGCATGGTACAATA
AGCTCAGGCAAAGCGTTGTGCATAAAAAGGGTGGCGTGGTAGGAGATGGT
GGTTTGGGAAACCAGCAGCAGCAGATGCAGCAGCAGCCGCAGCCGAGGGT
AGGGGGCGCTAGAGCTGGCAGCAGCAGCAGCAGCAGCATTCGTCCGCCAC
AAGCGCGATAGATGCTGTCGCAATGGCTCCCTGACCCAGGTACGGAAGCA
TCTTCGGCAGAGAGTGTCCTCCCTTTTGCGAGGAGCGGAGGCAGCCGGCC
TGGGCATGGTGGGCTCGCTGGTGGTGGCACTGGGAATGGGGTAAGGGGTA
GAGATGGGGGCCCTGCCCGCGGGGGGGGGCTTGACCTCGACCCGAGTAAG
GTGGTGGAAGCACATCGGCACGCAACGCAGGCAGAGGAGCTAAGGCGAGA
CGGACGATTGCTCGAAGCGTTGCAGGAGCACTTGGAGGCATCACATTGTT
TCCTCGAGGCGGCGGAGCTGCTGCGCGATGCGCATGGCGTGACGGGCGCT
GCCCTTGTCCTCCTCTCCGACGGACATGCACGCCAAGCCCATACACTCCA
ACAACTTCTACAAAAAGGAAAGACCGCTGCCTCCGAGACACTTCCCAAGA
CCACGCCCCGTCTTGTCCCCATGCCTCCTCCTCAACCCAAAGGGTTGGCT
GCCGAAGGCTCCATGTACTCCTCGACCATGGTGTGCAGTACCGCCAGTCT
CGCGGGCACCAATGCAACAGCAGTGACAGCAGGCACCGCTGCCGTGGATG
ATATGCTGGCGTTGGAGCGAGCATTGCAAGCTATCGGCTCTCAGCCTCTG
TTTTCGAGTGGTGCGTACCAAGGAGGGTGGGCGGGTGGAGGGCTCAATGC
AGGGCCTGGTGGACGTTATTTGTCATCGACCTTGGGCGATTCCTTTTTCC
TGGTAAGCAACCGCCATGCTGCTGCAAGGGAGGGGGCGTCGATGAATTGG
GAGGGAGGGAATAGCGCCGTGAGCTCTTCCAGGCAGGCGTTACCCCCTAG
GGGAGGCGCCGTAACAGGGGCGGTATGTGGTATTGGTGCTCAGGGAGTGT
CGGGCTTACCTCCCCGAGCAGTAGGAGGAGGAGGGGAAACCACAGAACGA
GCTTCCCGCATTACCGAAAGTGGGGGCACGAATTTGTCGTCATCGAGTAG
GAGTCCTCCTTCCTCAGTGGCAGAAGATTTGGTGTCGGCACCCTCCTCCT
CCTCCTCTACCGCTGGAGGTGGTAGTGGTGGTCGTGGGGGGGTTGGCTTT
TTGGAAGGTGTAGAAGCGATGCAGCAAGATGAGGTGATGCGTCTGCTTGG
ATGTATGAAAACGTTGGGGGATGAGAATGCAATGTTGATCAAGCAGGTGG
AGGATGGGGGGCGAGTGCGACAGGAAAACGAGAGGTTGAGGAGAGAGATG
GGTGAGTTTCAGGAGCAGTATGCGAAGAAGTTTCGAGATCTGAGATCGGC
ACTGGAAGAGTTTAGGCGTAAATATCCGAGTGAGAACAATCCGACGAATC
ACGTGGCGTCAGCAAGGGAGACGGCGCGTGTGAAGACGCTGGAGAGTGAG
ATAGAGAGTTTGATCGTGCGTCTGAACAGGGAGAGGGAAGCCGGGAGGAA
GAAGGATGCGATGATTGCCAAATATCAAGCATGGTACAATAAGCTCAGGC
AAAGCGTTGTGCATAAAAAGGGTGGCGTGGTAGGAGATGGTGGTTTGGGA
AACCAGCAGCAGCAGATGCAGCAGCAGCCGCAGCCGAGGGTAGGGGGCGC
TAGAGCTGGCAGCAGCAGCAGCAGCAGCATTCGTCCGCCACAAGCGCGAT
AGATGCTGTCGCAATGGCTCCCTGACCCAGGTACGGAAGCATCTTCGGCA
GAGAGTGTCCTCCCTTTTGCGAGGAGCGGAGGCAGCCGGCCTGGGCATGG
TGGGCTCGCTGGTGGTGGCACTGGGAATGGGGTAAGGGGTAGAGATGGGG
GCCCTGCCCGCGGGGGGGGGCTTGACCTCGACCCGAGTAAGGTGGTGGAA
GCACATCGGCACGCAACGCAGGCAGAGGAGCTAAGGCGAGACGGACGATT
GCTCGAAGCGTTGCAGGAGCACTTGGAGGCATCACATTGTTTCCTCGAGG
CGGCGGAGCTGCTGCGCGATGCGCATGGCGTG back to top
|