jgi.p|Nanoce1779_2|592441, mRNA_5408 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592441
Unique Name	mRNA_5408
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1465
Alignment location	scaffold_13:369078..370542 +

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Properties


Property Name	Value
TranscriptId	592527
Track	FilteredModels2
ProteinId	592441

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:369078..370542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592441	gene_5408	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592441	mRNA_5408-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5408	CDS_5408	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:369078..370542+
coding sequence from alignment at scaffold_13:369078..370542+

mRNA sequence

>mRNA_5408 ID=mRNA_5408|Name=jgi.p|Nanoce1779_2|592441|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp
AACGACGGGATCTGCTCGCTAGACTCGGTGCCCACTTCCTCCTCCTCTCC
TCTCTATTCCACCCACTACGTCTTTCTCATCCACTACATCTCCACCGCCT
CAACCAGGCTCTGCTCGTTTCGATTTTTGTCTCTCTATCCTCATGCCACT
ACTCGCCCCTTTTCCCCGTCTCGTACGCCATACAAATACAGGCAACAACA
AGCAGAGAGAGACGTATCCCCCTACTCCACTGGCCACGCTCCACCCCCCA
TCTCCCACCCAACAACTCTTCCGAATCGTCTCAAAGCCAACCCATAATGT
CGACGATAAAACTTAAGGGGTCCAGCCACTTCCGACAGCGTCTCGTATGT
GCCACGCTGAGTGGACGGCCCTTGCTTATCACCCAGATACGGGCCGACGA
CGAGGAGCCCGGCTTGCGGGACTTCGAAGGAAGCTTCTTGCGGCTGCTGG
AGCGTCTTACAAACGGGTGCCAGGTGGAGATCAATGAGACCGGCACGGTA
CTACGCTATGTCCCAGGCATTATTACGGGCGGACGGCACGCCCATGATTG
CGGGACAGCTCGGTCGATCGGCTGGTTTTTGGAGGGCATTTTGCCCTTGG
CCGTGTTTGGGAAGGAGCCGTTGGCTTTGTCCTTGACAGGACTGACCAAC
GATACTCTCGATGTCTCTGTGGATAACTTTAAAGGGGCAATACTTCCCCT
GCTATCGTACTTTGGTGCGGAAGGTGCGGACCTCAAGGTCAAAAAGCGGG
GCTTGCCCCCATCTGGAGGAGGGTTGGTAGTGTTTACATGTCCAATCGTG
CGGGAGCTGCAGCCATGCAATTTAGTGGACGCGGGATTGATAAGACGTGT
TAGAGGGGTGGCATATTGTGCCAAAGTTTCTCCTCAATTCGCCAATCGCG
TCGTGACCTCTGCAAGGGGGCTGCTAAATCGATTATTGCCTGATGTGTTT
GTGCACACGGATCATTACAAGGGAGCGGCGGGGGGTGAGAGTCCCGGGTA
TGGTTTAAGTTTAGTAGCAGAGAGCACAACGGGTTGTCTGGTGGCGATCG
ATGTTCACGCAGAGGAAGGGTCATTGCCGGAGGAGATTGGGCAGCGAGGG
AGTGCGTTGTTGCTTGAGGAAGTGAGAAGGGGTGGCTGTGTGGATTCGGT
CGGGCAGGCGTTAGTGTTGTTGTTAATGGCGCTCGGACCCGAGGATGTGT
CAAGGGTACGAGTTGGTCAACTGTCATCGCATGCGATTCAAACGTTACGC
TTGGTGAGGGAGGCATTTGGGGTAATCTTCAAGATTCGCGCAGACAGGGA
GACAGGGACTGTGCTGCTGTCGTGTTTGGGGAGTGGGGTGAAGAATATCA
GTAAAAAGGTTACGTAAATTTAAGGAGGAAATTAACAAGAGGAGATCGAG
GTCTATAAAACTTTTTCAAAGCCCAAAAGGCAGAAGGAGAAAGAAGGTCA
GCAAATTATTGGCGA

protein sequence of jgi.p|Nanoce1779_2|592441

>mRNA_5408-protein ID=mRNA_5408-protein|Name=jgi.p|Nanoce1779_2|592441|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSTIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRL
LERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILP
LAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGAEGADLKVKK
RGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFAN
RVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVA
IDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPED
VSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGSGVKN
ISKKVT*

mRNA from alignment at scaffold_13:369078..370542+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5408 ID=mRNA_5408|Name=jgi.p|Nanoce1779_2|592441|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp|location=Sequence derived from alignment at scaffold_13:369078..370542+ (Nannochloropsis oceanica)
AACGACGGGATCTGCTCGCTAGACTCGGTGCCCACTTCCTCCTCCTCTCC
TCTCTATTCCACCCACTACGTCTTTCTCATCCACTACATCTCCACCGCCT
CAACCAGGCTCTGCTCGTTTCGATTTTTGTCTCTCTATCCTCATGCCACT
ACTCGCCCCTTTTCCCCGTCTCGTACGCCATACAAATACAGGCAACAACA
AGCAGAGAGAGACGTATCCCCCTACTCCACTGGCCACGCTCCACCCCCCA
TCTCCCACCCAACAACTCTTCCGAATCGTCTCAAAGCCAACCCATAATGT
CGACGATAAAACTTAAGGGGTCCAGCCACTTCCGACAGCGTCTCGTATGT
GCCACGCTGAGTGGACGGCCCTTGCTTATCACCCAGATACGGGCCGACGA
CGAGGAGCCCGGCTTGCGGGACTTCGAAGGAAGCTTCTTGCGGCTGCTGG
AGCGTCTTACAAACGGGTGCCAGGTGGAGATCAATGAGACCGGCACGGTA
CTACGCTATGTCCCAGGCATTATTACGGGCGGACGGCACGCCCATGATTG
CGGGACAGCTCGGTCGATCGGCTGGTTTTTGGAGGGCATTTTGCCCTTGG
CCGTGTTTGGGAAGGAGCCGTTGGCTTTGTCCTTGACAGGACTGACCAAC
GATACTCTCGATGTCTCTGTGGATAACTTTAAAGGGGCAATACTTCCCCT
GCTATCGTACTTTGGTGCGGAAGGTGCGGACCTCAAGGTCAAAAAGCGGG
GCTTGCCCCCATCTGGAGGAGGGTTGGTAGTGTTTACATGTCCAATCGTG
CGGGAGCTGCAGCCATGCAATTTAGTGGACGCGGGATTGATAAGACGTGT
TAGAGGGGTGGCATATTGTGCCAAAGTTTCTCCTCAATTCGCCAATCGCG
TCGTGACCTCTGCAAGGGGGCTGCTAAATCGATTATTGCCTGATGTGTTT
GTGCACACGGATCATTACAAGGGAGCGGCGGGGGGTGAGAGTCCCGGGTA
TGGTTTAAGTTTAGTAGCAGAGAGCACAACGGGTTGTCTGGTGGCGATCG
ATGTTCACGCAGAGGAAGGGTCATTGCCGGAGGAGATTGGGCAGCGAGGG
AGTGCGTTGTTGCTTGAGGAAGTGAGAAGGGGTGGCTGTGTGGATTCGGT
CGGGCAGGCGTTAGTGTTGTTGTTAATGGCGCTCGGACCCGAGGATGTGT
CAAGGGTACGAGTTGGTCAACTGTCATCGCATGCGATTCAAACGTTACGC
TTGGTGAGGGAGGCATTTGGGGTAATCTTCAAGATTCGCGCAGACAGGGA
GACAGGGACTGTGCTGCTGTCGTGTTTGGGGAGTGGGGTGAAGAATATCA
GTAAAAAGGTTACGTAAATTTAAGGAGGAAATTAACAAGAGGAGATCGAG
GTCTATAAAACTTTTTCAAAGCCCAAAAGGCAGAAGGAGAAAGAAGGTCA
GCAAATTATTGGCGA

Coding sequence (CDS) from alignment at scaffold_13:369078..370542+

>mRNA_5408 ID=mRNA_5408|Name=jgi.p|Nanoce1779_2|592441|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_13:369078..370542+ (Nannochloropsis oceanica)
ATGTCGACGATAAAACTTAAGGGGTCCAGCCACTTCCGACAGCGTCTCGT
ATGTGCCACGCTGAGTGGACGGCCCTTGCTTATCACCCAGATACGGGCCG
ACGACGAGGAGCCCGGCTTGCGGGACTTCGAAGGAAGCTTCTTGCGGCTG
CTGGAGCGTCTTACAAACGGGTGCCAGGTGGAGATCAATGAGACCGGCAC
GGTACTACGCTATGTCCCAGGCATTATTACGGGCGGACGGCACGCCCATG
ATTGCGGGACAGCTCGGTCGATCGGCTGGTTTTTGGAGGGCATTTTGCCC
TTGGCCGTGTTTGGGAAGGAGCCGTTGGCTTTGTCCTTGACAGGACTGAC
CAACGATACTCTCGATGTCTCTGTGGATAACTTTAAAGGGGCAATACTTC
CCCTGCTATCGTACTTTGGTGCGGAAGGTGCGGACCTCAAGGTCAAAAAG
CGGGGCTTGCCCCCATCTGGAGGAGGGTTGGTAGTGTTTACATGTCCAAT
CGTGCGGGAGCTGCAGCCATGCAATTTAGTGGACGCGGGATTGATAAGAC
GTGTTAGAGGGGTGGCATATTGTGCCAAAGTTTCTCCTCAATTCGCCAAT
CGCGTCGTGACCTCTGCAAGGGGGCTGCTAAATCGATTATTGCCTGATGT
GTTTGTGCACACGGATCATTACAAGGGAGCGGCGGGGGGTGAGAGTCCCG
GGTATGGTTTAAGTTTAGTAGCAGAGAGCACAACGGGTTGTCTGGTGGCG
ATCGATGTTCACGCAGAGGAAGGGTCATTGCCGGAGGAGATTGGGCAGCG
AGGGAGTGCGTTGTTGCTTGAGGAAGTGAGAAGGGGTGGCTGTGTGGATT
CGGTCGGGCAGGCGTTAGTGTTGTTGTTAATGGCGCTCGGACCCGAGGAT
GTGTCAAGGGTACGAGTTGGTCAACTGTCATCGCATGCGATTCAAACGTT
ACGCTTGGTGAGGGAGGCATTTGGGGTAATCTTCAAGATTCGCGCAGACA
GGGAGACAGGGACTGTGCTGCTGTCGTGTTTGGGGAGTGGGGTGAAGAAT
ATCAGTAAAAAGGTTACGTAA

Synonyms

Publications