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Properties
| Property Name | Value |
|---|
| TranscriptId | 592519 |
| Track | FilteredModels2 |
| ProteinId | 592433 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:365187..367521 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5406 ID=mRNA_5406|Name=jgi.p|Nanoce1779_2|592433|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp
CAGGAGACTCTTTGCTCGCTTCCGGTTCACCCCGTTTGCCTGCCAAGTCC
CCCCACACTACAGCCTCTCAACCCTTAAAAACTATTCAACAACAACCATG
CGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGTATCCAGACTGGTAA
TGCCTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGCCCGATGGGC
AGATGCCGTCCGAAAAGACGATCGGCGGTGGCGACGATGCCTTCAACACC
TTCTTCTCCGAGACTGGTGCCGGAAAACATGTGCCCCGCGCAGTGTATGT
TGACTTGGAGCCGACCGTGTGTGACGAAGTGCGCACTGGCACCTACCGCC
AGCTGTACCACCCTGAGCAGATCATCTCTGGCAAGGAGGACGCGGCGAAT
AACTACGCCCGTGGTCACTACACCATCGGCAAGGAAATCGTCGACCTGGT
CTTGGACCGAGTGCGCAAGTTGGCGGACAACTGTACGGGCCTCCAGGGGT
TCCTCATCTTCCATGCCACAGGCGGGGGCACTGGCTCCGGGTTAGGTGCC
TTGCTCTTGGAGCGCCTGTCGGTGGATTATGGGCGTAAGTCCAAGCTCTC
ATTCGCCGTGACTCCTGCCCCACAGGTGGCCACTGCCGTGGTGGAGCCCT
ACAACTCCGTCTTGTCCACGCACGCCCTGCTGGAGCACACGGATGTTACG
TTCTGTCTGGATAACGAGGCCTTGTACGATACGTGCCGTCGTAACTTGGA
CATCGAGCGACCCACCTACACCAACCTCAACCGTTTGATCGCCCAGGTGA
TCTCCTCCCTGACTGCTTCCTTGCGTTTCGACGGTGCCCTGAATGTGGAT
GTGACCGAGTTCCAGACCAACCTGGTACCTTACCCCCGCATCCACTTTAT
GCTGACATCCTACGCGCCCGTCATCTCCGCCGAGAAGGCCTACCACGAGC
AGCTGTCCGTGGCCGAGATCACCAACTCGGTCTTCGAGCCGGCCAACATG
ATGACCAAGTGCGACCCCCGCCACGGGAAGTACATGGCCTGCTGCCTCAT
GTACCGCGGTGACGTCGTCCCCAAGGACGTGAACGCCGCCGTGGCCACCA
TCAAGACTAAGCGCACCATCCAATTTGTTGACTGGTGCCCCACTGGCTTC
AAGTGCGGCATCAACTACCAGCCTCCCACCGTCGTCCCCGGCGGTGACCT
GGCCCGTGTGCAGCGCGCGGTGTGCATGGTGGCCAACACCACGGCCATCG
CTGAGGCTCTGTCCCGCATCGACCACAAGTTCGACCTCATGTACGCCAAG
CGTGCCTTCGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTT
CAGCGAGGCCCGAGAGGATCTGGCTGCCTTGGAGAAGGATTACGAAGAGG
TCGGGGCCGACTCCTCCGTGGAAGGCGAGGGGGATGAAGGCGAGGAGTAC
TAAGGCCGCCGACACCTGGTGTGTGTGGGATCAGGAGGAGGGAGTGAAGA
GGAGAAGGGATCTGGTTTCAGAGATCCCCACTTCTGCCGTCGTCTTTCGG
CCTTCCTTCCTTTTAGGTGTCATGCCTTAGGTCCTTCAAGTCCTCACCTG
TCGTCGTCATGTGTGTGTGCGCCCGTCATTCAAGTCATTCGATCCAATTC
ACGCATCGGTTCAATCAAAATAAGACTAGACCCCGAGGGAAGAAGGGCAG
AAGGAAATCGAAGGGGTGGGATGTGTGTGAGAGAGGGAAGGAGAAATGAA
AGAAGTGAACAATGTCATGGTAGCCAGTAAGGAGAGAGTAGAAGCGAAGA
AAGCAAAAGCACTGTTGTGAAGAAACGAAATGGAAGATGGTCATCGCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|592433 >mRNA_5406-protein ID=mRNA_5406-protein|Name=jgi.p|Nanoce1779_2|592433|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRECISIHVGQGGIQTGNACWELYCLEHGIQPDGQMPSEKTIGGGDDAFN
TFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAA
NNYARGHYTIGKEIVDLVLDRVRKLADNCTGLQGFLIFHATGGGTGSGLG
ALLLERLSVDYGRKSKLSFAVTPAPQVATAVVEPYNSVLSTHALLEHTDV
TFCLDNEALYDTCRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNV
DVTEFQTNLVPYPRIHFMLTSYAPVISAEKAYHEQLSVAEITNSVFEPAN
MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTG
FKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSSVEGEGDEGEE
Y* back to topmRNA from alignment at scaffold_13:365187..367521+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5406 ID=mRNA_5406|Name=jgi.p|Nanoce1779_2|592433|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp|location=Sequence derived from alignment at scaffold_13:365187..367521+ (Nannochloropsis oceanica)
CAGGAGACTCTTTGCTCGCTTCCGGTTCACCCCGTTTGCCTGCCAAGTCC
CCCCACACTACAGCCTCTCAACCCTTAAAAACTATTCAACAACAACCATG
CGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGTATCCAGACTGGTAA
TGCCTGCTGGGAGCTTTACTGGTACGTAAGTTGACGGTTACGGGTATGAG
GATGTGACAGGGGACTTGCCGTTTGTCGCGTGAAGCCGCGCAGAAAGATG
GGGTTCTTTTCGTGGACTGGGTCCACCGGCGAAGACTGCACAGTATTCGT
TCAGCTTGTCAAAGAGAGAGTAGAGTCAGACGCGTTTCCTTCCTGTACAG
CCTTCCCCCTCCCACTCGCACATTTTTTTGCCTCTCCTTCCCTCCCCTTC
ACCCCCCTTCCCAACACAGCCTCGAGCATGGCATCCAGCCCGATGGGCAG
ATGCCGTCCGAAAAGACGATCGGCGGTGGCGACGATGCCTTCAACACCTT
CTTCTCCGAGACTGGTGCCGGAAAACATGTGCCCCGCGCAGTGTATGTTG
ACTTGGAGCCGACCGTGTGTGACGAAGTGCGCACTGGCACCTACCGCCAG
CTGTACCACCCTGAGCAGATCATCTCTGGCAAGGAGGACGCGGCGAATAA
CTACGCCCGTGGTCACTACACCATCGGCAAGGAAATCGTCGACCTGGTCT
TGGACCGAGTGCGCAAGTTGGCGGACAACTGTACGGGCCTCCAGGGGTTC
CTCATCTTCCATGCCACAGGCGGGGGCACTGGCTCCGGGTTAGGTGCCTT
GCTCTTGGAGCGCCTGTCGGTGGATTATGGGCGTAAGTCCAAGCTCTCAT
TCGCCGTGACTCCTGCCCCACAGGTGGCCACTGCCGTGGTGGAGCCCTAC
AACTCCGTCTTGTCCACGCACGCCCTGCTGGAGCACACGGATGTTACGTT
CTGTCTGGATAACGAGGCCTTGTACGATACGTGCCGTCGTAACTTGGACA
TCGAGCGACCCACCTACACCAACCTCAACCGTTTGATCGCCCAGGTAACT
ATAACACTGCCTCCCTCCCCCCGCTCCTCCTTTAAATCAAACACGCAAAA
CACCCTTCTCCACTCCCTCCTTTCTGACAGGTGATCTCCTCCCTGACTGC
TTCCTTGCGTTTCGACGGTGCCCTGAATGTGGATGTGACCGAGTTCCAGA
CCAACCTGGTACCTTACCCCCGCATCCACTTTATGCTGACATCCTACGCG
CCCGTCATCTCCGCCGAGAAGGCCTACCACGAGCAGCTGTCCGTGGCCGA
GATCACCAACTCGGTCTTCGAGCCGGCCAACATGATGACCAAGTGCGACC
CCCGCCACGGGAAGTACATGGCCTGCTGCCTCATGTACCGCGGTGACGTC
GTCCCCAAGGACGTGAACGCCGCCGTGGCCACCATCAAGACTAAGCGCAC
CATCCAATTTGTTGACTGGTGCCCCACTGGCTTCAAGTGCGGCATCAACT
ACCAGCCTCCCACCGTCGTCCCCGGCGGTGACCTGGCCCGTGTGCAGGTA
AGATTTTCTCTCATTCTCCCTCCCTGTTTGCCTGCTGTCGTGTGCATGAT
GGTGCCGCTTCGCGCCTCGGCCTTGTCTTTCGTTTGACTTATTGTTTGTG
GGTATTTCTCCACTGACCCCTTCTGCCCTCCCCCTACGCCCCAAACAGCG
CGCGGTGTGCATGGTGGCCAACACCACGGCCATCGCTGAGGCTCTGTCCC
GCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCAC
TGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCAGCGAGGCCCGAGA
GGATCTGGCTGCCTTGGAGAAGGATTACGAAGAGGTCGGGGCCGACTCCT
CCGTGGAAGGCGAGGGGGATGAAGGCGAGGAGTACTAAGGCCGCCGACAC
CTGGTGTGTGTGGGATCAGGAGGAGGGAGTGAAGAGGAGAAGGGATCTGG
TTTCAGAGATCCCCACTTCTGCCGTCGTCTTTCGGCCTTCCTTCCTTTTA
GGTGTCATGCCTTAGGTCCTTCAAGTCCTCACCTGTCGTCGTCATGTGTG
TGTGCGCCCGTCATTCAAGTCATTCGATCCAATTCACGCATCGGTTCAAT
CAAAATAAGACTAGACCCCGAGGGAAGAAGGGCAGAAGGAAATCGAAGGG
GTGGGATGTGTGTGAGAGAGGGAAGGAGAAATGAAAGAAGTGAACAATGT
CATGGTAGCCAGTAAGGAGAGAGTAGAAGCGAAGAAAGCAAAAGCACTGT
TGTGAAGAAACGAAATGGAAGATGGTCATCGCTCC back to topCoding sequence (CDS) from alignment at scaffold_13:365187..367521+ >mRNA_5406 ID=mRNA_5406|Name=jgi.p|Nanoce1779_2|592433|organism=Nannochloropsis oceanica|type=CDS|length=5424bp|location=Sequence derived from alignment at scaffold_13:365187..367521+ (Nannochloropsis oceanica)
ATGCGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGTATCCAGACTGG
TAATGCCTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGCCCGATG
GGCAGATGCCGTCCGAAAAGACGATCGGCGGTGGCGACGATGCCTTCAAC
ACCTTCTTCTCCGAGACTGGTGCCGGAAAACATGTGCCCCGCGCAGTGTA
TGTTGACTTGGAGCCGACCGTGTGTGACGAAGTGCGCACTGGCACCTACC
GCCAGCTGTACCACCCTGAGCAGATCATCTCTGGCAAGGAGGACGCGGCG
AATAACTACGCCCGTGGTCACTACACCATCGGCAAGGAAATCGTCGACCT
GGTCTTGGACCGAGTGCGCAAGTTGGCGGACAACTGTACGGGCCTCCAGG
GGTTCCTCATCTTCCATGCCACAGGCGGGGGCACTGGCTCCGGGTTAGGT
GCCTTGCTCTTGGAGCGCCTGTCGGTGGATTATGGGCGTAAGTCCAAGCT
CTCATTCGCCGTGACTCCTGCCCCACAGGTGGCCACTGCCGTGGTGGAGC
CCTACAACTCCGTCTTGTCCACGCACGCCCTGCTGGAGCACACGGATGTT
ACGTTCTGTCTGGATAACGAGGCCTTGTACGATACGTGCCGTCGTAACTT
GGACATCGAGCGACCCACCTACACCAACCTCAACCGTTTGATCGCCCAGG
TGATCTCCTCCCTGACTGCTTCCTTGCGTTTCGACGGTGCCCTGAATGTG
GATGTGACCGAGTTCCAGACCAACCTGGTACCTTACCCCCGCATCCACTT
TATGCTGACATCCTACGCGCCCGTCATCTCCGCCGAGAAGGCCTACCACG
AGCAGCTGTCCGTGGCCGAGATCACCAACTCGGTCTTCGAGCCGGCCAAC
ATGATGACCAAGTGCGACCCCCGCCACGGGAAGTACATGGCCTGCTGCCT
CATGTACCGCGGTGACGTCGTCCCCAAGGACGTGAACGCCGCCGTGGCCA
CCATCAAGACTAAGCGCACCATCCAATTTGTTGACTGGTGCCCCACTGGC
TTCAAGTGCGGCATCAACTACCAGCCTCCCACCGTCGTCCCCGGCGGTGA
CCTGGCCCGTGTGCAGCGCGCGGTGTGCATGGTGGCCAACACCACGGCCA
TCGCTGAGGCTCTGTCCCGCATCGACCACAAGTTCGACCTCATGTACGCC
AAGCGTGCCTTCGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGA
GTTCAGCGAGGCCCGAGAGGATCTGGCTGCCTTGGAGAAGGATTACGAAG
AGGTCGGGGCCGACTCCTCCGTGGAAGGCGAGGGGGATGAAGGCGAGGAG
TACTAAATGCGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGGTATCCA
GACTGGTAATGCCTGCTGGGAGCTTTACTGCCTCGAGCATGGCATCCAGC
CCGATGGGCAGATGCCGTCCGAAAAGACGATCGGCGGTGGCGACGATGCC
TTCAACACCTTCTTCTCCGAGACTGGTGCCGGAAAACATGTGCCCCGCGC
AGTGTATGTTGACTTGGAGCCGACCGTGTGTGACGAAGTGCGCACTGGCA
CCTACCGCCAGCTGTACCACCCTGAGCAGATCATCTCTGGCAAGGAGGAC
GCGGCGAATAACTACGCCCGTGGTCACTACACCATCGGCAAGGAAATCGT
CGACCTGGTCTTGGACCGAGTGCGCAAGTTGGCGGACAACTGTACGGGCC
TCCAGGGGTTCCTCATCTTCCATGCCACAGGCGGGGGCACTGGCTCCGGG
TTAGGTGCCTTGCTCTTGGAGCGCCTGTCGGTGGATTATGGGCGTAAGTC
CAAGCTCTCATTCGCCGTGACTCCTGCCCCACAGGTGGCCACTGCCGTGG
TGGAGCCCTACAACTCCGTCTTGTCCACGCACGCCCTGCTGGAGCACACG
GATGTTACGTTCTGTCTGGATAACGAGGCCTTGTACGATACGTGCCGTCG
TAACTTGGACATCGAGCGACCCACCTACACCAACCTCAACCGTTTGATCG
CCCAGGTGATCTCCTCCCTGACTGCTTCCTTGCGTTTCGACGGTGCCCTG
AATGTGGATGTGACCGAGTTCCAGACCAACCTGGTACCTTACCCCCGCAT
CCACTTTATGCTGACATCCTACGCGCCCGTCATCTCCGCCGAGAAGGCCT
ACCACGAGCAGCTGTCCGTGGCCGAGATCACCAACTCGGTCTTCGAGCCG
GCCAACATGATGACCAAGTGCGACCCCCGCCACGGGAAGTACATGGCCTG
CTGCCTCATGTACCGCGGTGACGTCGTCCCCAAGGACGTGAACGCCGCCG
TGGCCACCATCAAGACTAAGCGCACCATCCAATTTGTTGACTGGTGCCCC
ACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCCACCGTCGTCCCCGG
CGGTGACCTGGCCCGTGTGCAGCGCGCGGTGTGCATGGTGGCCAACACCA
CGGCCATCGCTGAGGCTCTGTCCCGCATCGACCACAAGTTCGACCTCATG
TACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGCGAGGGCATGGAGGA
GGGCGAGTTCAGCGAGGCCCGAGAGGATCTGGCTGCCTTGGAGAAGGATT
ACGAAGAGGTCGGGGCCGACTCCTCCGTGGAAGGCGAGGGGGATGAAGGC
GAGGAGTACTAAATGCGTGAGTGCATCTCTATCCACGTCGGCCAGGGCGG
TATCCAGACTGGTAATGCCTGCTGGGAGCTTTACTGCCTCGAGCATGGCA
TCCAGCCCGATGGGCAGATGCCGTCCGAAAAGACGATCGGCGGTGGCGAC
GATGCCTTCAACACCTTCTTCTCCGAGACTGGTGCCGGAAAACATGTGCC
CCGCGCAGTGTATGTTGACTTGGAGCCGACCGTGTGTGACGAAGTGCGCA
CTGGCACCTACCGCCAGCTGTACCACCCTGAGCAGATCATCTCTGGCAAG
GAGGACGCGGCGAATAACTACGCCCGTGGTCACTACACCATCGGCAAGGA
AATCGTCGACCTGGTCTTGGACCGAGTGCGCAAGTTGGCGGACAACTGTA
CGGGCCTCCAGGGGTTCCTCATCTTCCATGCCACAGGCGGGGGCACTGGC
TCCGGGTTAGGTGCCTTGCTCTTGGAGCGCCTGTCGGTGGATTATGGGCG
TAAGTCCAAGCTCTCATTCGCCGTGACTCCTGCCCCACAGGTGGCCACTG
CCGTGGTGGAGCCCTACAACTCCGTCTTGTCCACGCACGCCCTGCTGGAG
CACACGGATGTTACGTTCTGTCTGGATAACGAGGCCTTGTACGATACGTG
CCGTCGTAACTTGGACATCGAGCGACCCACCTACACCAACCTCAACCGTT
TGATCGCCCAGGTGATCTCCTCCCTGACTGCTTCCTTGCGTTTCGACGGT
GCCCTGAATGTGGATGTGACCGAGTTCCAGACCAACCTGGTACCTTACCC
CCGCATCCACTTTATGCTGACATCCTACGCGCCCGTCATCTCCGCCGAGA
AGGCCTACCACGAGCAGCTGTCCGTGGCCGAGATCACCAACTCGGTCTTC
GAGCCGGCCAACATGATGACCAAGTGCGACCCCCGCCACGGGAAGTACAT
GGCCTGCTGCCTCATGTACCGCGGTGACGTCGTCCCCAAGGACGTGAACG
CCGCCGTGGCCACCATCAAGACTAAGCGCACCATCCAATTTGTTGACTGG
TGCCCCACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCCACCGTCGT
CCCCGGCGGTGACCTGGCCCGTGTGCAGCGCGCGGTGTGCATGGTGGCCA
ACACCACGGCCATCGCTGAGGCTCTGTCCCGCATCGACCACAAGTTCGAC
CTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGCGAGGGCAT
GGAGGAGGGCGAGTTCAGCGAGGCCCGAGAGGATCTGGCTGCCTTGGAGA
AGGATTACGAAGAGGTCGGGGCCGACTCCTCCGTGGAAGGCGAGGGGGAT
GAAGGCGAGGAGTACTAAATGCGTGAGTGCATCTCTATCCACGTCGGCCA
GGGCGGTATCCAGACTGGTAATGCCTGCTGGGAGCTTTACTGCCTCGAGC
ATGGCATCCAGCCCGATGGGCAGATGCCGTCCGAAAAGACGATCGGCGGT
GGCGACGATGCCTTCAACACCTTCTTCTCCGAGACTGGTGCCGGAAAACA
TGTGCCCCGCGCAGTGTATGTTGACTTGGAGCCGACCGTGTGTGACGAAG
TGCGCACTGGCACCTACCGCCAGCTGTACCACCCTGAGCAGATCATCTCT
GGCAAGGAGGACGCGGCGAATAACTACGCCCGTGGTCACTACACCATCGG
CAAGGAAATCGTCGACCTGGTCTTGGACCGAGTGCGCAAGTTGGCGGACA
ACTGTACGGGCCTCCAGGGGTTCCTCATCTTCCATGCCACAGGCGGGGGC
ACTGGCTCCGGGTTAGGTGCCTTGCTCTTGGAGCGCCTGTCGGTGGATTA
TGGGCGTAAGTCCAAGCTCTCATTCGCCGTGACTCCTGCCCCACAGGTGG
CCACTGCCGTGGTGGAGCCCTACAACTCCGTCTTGTCCACGCACGCCCTG
CTGGAGCACACGGATGTTACGTTCTGTCTGGATAACGAGGCCTTGTACGA
TACGTGCCGTCGTAACTTGGACATCGAGCGACCCACCTACACCAACCTCA
ACCGTTTGATCGCCCAGGTGATCTCCTCCCTGACTGCTTCCTTGCGTTTC
GACGGTGCCCTGAATGTGGATGTGACCGAGTTCCAGACCAACCTGGTACC
TTACCCCCGCATCCACTTTATGCTGACATCCTACGCGCCCGTCATCTCCG
CCGAGAAGGCCTACCACGAGCAGCTGTCCGTGGCCGAGATCACCAACTCG
GTCTTCGAGCCGGCCAACATGATGACCAAGTGCGACCCCCGCCACGGGAA
GTACATGGCCTGCTGCCTCATGTACCGCGGTGACGTCGTCCCCAAGGACG
TGAACGCCGCCGTGGCCACCATCAAGACTAAGCGCACCATCCAATTTGTT
GACTGGTGCCCCACTGGCTTCAAGTGCGGCATCAACTACCAGCCTCCCAC
CGTCGTCCCCGGCGGTGACCTGGCCCGTGTGCAGCGCGCGGTGTGCATGG
TGGCCAACACCACGGCCATCGCTGAGGCTCTGTCCCGCATCGACCACAAG
TTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGCGA
GGGCATGGAGGAGGGCGAGTTCAGCGAGGCCCGAGAGGATCTGGCTGCCT
TGGAGAAGGATTACGAAGAGGTCGGGGCCGACTCCTCCGTGGAAGGCGAG
GGGGATGAAGGCGAGGAGTACTAA back to top
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