jgi.p|Nanoce1779_2|592432, mRNA_5405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592432
Unique NamemRNA_5405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length594
Alignment locationscaffold_13:364679..365272 +

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Properties
Property NameValue
TranscriptId592518
TrackFilteredModels2
ProteinId592432
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:364679..365272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592432gene_5405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592432mRNA_5405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5405CDS_5405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5405 ID=mRNA_5405|Name=jgi.p|Nanoce1779_2|592432|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
CGTTCATTCGTTGCTCCCCCCTCCTCTTAAGGGACTGGACGATTCGTCAA
GCCATTTTTGTGCTTTTTGTTGGTACACTCCAGGATTACCCGTCCTCTCC
TCCCGGACAGTTACCTCACGGCTTGCCACCTGAAGCATGGATGAGGCCTG
GGTGCAGGCGCAAGCTTGTGCTTTTTTTGAATAACAAGTCTCGCACCCCG
CCGAAAACCGGGGTTCCATGTCTTCCCTCCACGTTTTCGGTGCGCTTTTC
CCCCCTCTTTTGCACACCCACCACCTCGCAGACCGACTCCCTCGTCCGTA
CCAGGGACGCGTAGGCCATTGTTATGCGTGCGGACAGGCTGAGGTCTGCG
CAAAGGCGTTGGTGACGACTACAGCTTCTTGCGTGTATGCCGAAGAAGAG
TGGTCGCTTCCAAAAATTTTCGCGAGCTCTCCGCCCGCGCCAACCCTCAC
CACACACCTCTCGCCACACAGCTCACCAGTGCCCTTCTCACCACAACTAT
ATTACTTGCAGGAGACTCTTTGCTCGCTTCCGGTTCACCCCGTTTGCCTG
CCAAGTCCCCCCACACTACAGCCTCTCAACCCTTAAAAACTATT
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protein sequence of jgi.p|Nanoce1779_2|592432

>mRNA_5405-protein ID=mRNA_5405-protein|Name=jgi.p|Nanoce1779_2|592432|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MSSLHVFGALFPPLLHTHHLADRLPRPYQGRVGHCYACGQAEVCAKALVT
TTASCVYAEEEWSLPKIFASSPPAPTLTTHLSPHSSPVPFSPQLYYLQET
LCSLPVHPVCLPSPPTLQPLNP*
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mRNA from alignment at scaffold_13:364679..365272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5405 ID=mRNA_5405|Name=jgi.p|Nanoce1779_2|592432|organism=Nannochloropsis oceanica|type=mRNA|length=594bp|location=Sequence derived from alignment at scaffold_13:364679..365272+ (Nannochloropsis oceanica)
CGTTCATTCGTTGCTCCCCCCTCCTCTTAAGGGACTGGACGATTCGTCAA
GCCATTTTTGTGCTTTTTGTTGGTACACTCCAGGATTACCCGTCCTCTCC
TCCCGGACAGTTACCTCACGGCTTGCCACCTGAAGCATGGATGAGGCCTG
GGTGCAGGCGCAAGCTTGTGCTTTTTTTGAATAACAAGTCTCGCACCCCG
CCGAAAACCGGGGTTCCATGTCTTCCCTCCACGTTTTCGGTGCGCTTTTC
CCCCCTCTTTTGCACACCCACCACCTCGCAGACCGACTCCCTCGTCCGTA
CCAGGGACGCGTAGGCCATTGTTATGCGTGCGGACAGGCTGAGGTCTGCG
CAAAGGCGTTGGTGACGACTACAGCTTCTTGCGTGTATGCCGAAGAAGAG
TGGTCGCTTCCAAAAATTTTCGCGAGCTCTCCGCCCGCGCCAACCCTCAC
CACACACCTCTCGCCACACAGCTCACCAGTGCCCTTCTCACCACAACTAT
ATTACTTGCAGGAGACTCTTTGCTCGCTTCCGGTTCACCCCGTTTGCCTG
CCAAGTCCCCCCACACTACAGCCTCTCAACCCTTAAAAACTATT
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Coding sequence (CDS) from alignment at scaffold_13:364679..365272+

>mRNA_5405 ID=mRNA_5405|Name=jgi.p|Nanoce1779_2|592432|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_13:364679..365272+ (Nannochloropsis oceanica)
ATGTCTTCCCTCCACGTTTTCGGTGCGCTTTTCCCCCCTCTTTTGCACAC
CCACCACCTCGCAGACCGACTCCCTCGTCCGTACCAGGGACGCGTAGGCC
ATTGTTATGCGTGCGGACAGGCTGAGGTCTGCGCAAAGGCGTTGGTGACG
ACTACAGCTTCTTGCGTGTATGCCGAAGAAGAGTGGTCGCTTCCAAAAAT
TTTCGCGAGCTCTCCGCCCGCGCCAACCCTCACCACACACCTCTCGCCAC
ACAGCTCACCAGTGCCCTTCTCACCACAACTATATTACTTGCAGGAGACT
CTTTGCTCGCTTCCGGTTCACCCCGTTTGCCTGCCAAGTCCCCCCACACT
ACAGCCTCTCAACCCTTAA
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Synonyms
Publications