jgi.p|Nanoce1779_2|592423, mRNA_5403 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592423
Unique Name	mRNA_5403
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2067
Alignment location	scaffold_13:358954..361020 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592509
Track	FilteredModels2
ProteinId	592423

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:358954..361020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592423	gene_5403	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592423	mRNA_5403-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5403	CDS_5403	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:358954..361020+
coding sequence from alignment at scaffold_13:358954..361020+

mRNA sequence

>mRNA_5403 ID=mRNA_5403|Name=jgi.p|Nanoce1779_2|592423|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
CAGACAAGCCATGGCGGGCAAGAACCTGAAAAAGGCGGCCAGCGGAAAGG
GAGTTGCCATCAAACAGGAGACTCCCACGGCGACAATGCGCCAAAGCACA
GCTGAACGCGGCAACAATACGGCCATTCGCAACAAACGTAAGGCTGTATC
GGATGGGCCGACAGGGGGGAAGTCGAGCGAGGAAGACACAGTAGGTAGGC
ATCGCGCGAGCAAAGTGGGTATAGGGAGACGACGCGGAAACATAAAACCT
CCCTTCTCCACGTCATCCACTCCCTCACATGCATTCCGTCCCCACATACA
CCGCAACAGCGCGTCGTCGATCGACGCGTGCCTGCCCTGTGGTCGAGAAT
AATGATGTGCATGTGAAGGAAGAGCTGACGGTGGTCCCATCTGCGATCGA
GGGCACGATAGCCATGAACGGTAATAGAGGTGACGAAAGCAGTGCCATGT
CAGCCTTTGAGCTCGAGCGTTTGGAGAACATTCGACGTAACCAGGAGGTT
CTGCGATCTTTAGGTTTGGGGGCCACTCGATCGGAGATGGGCTTGAATGC
CGCCGCTCAGCGCATTCAACAGGTCCGCAAAAAGACCGTGGGCAGCAATC
CTGGCCTCAAGCCCGTCAAGCGGGAGCCCCGCGCGCCTACTCGGCGATCC
GCGCGGATGGAAGGCAAGGATGCTCCGTTCTATAGCGAAGAAAAACTCAT
CATGGAGGTGGAGGCAAGGTCAGCGAGAGAGGAGGAGAAGCGCATGGACG
AAGGCCCTCTAACACTCGAGACGTTGAATCGCTCGGAGGAAGGTGGTGCT
GATTTTTTAGGGCTGCTCAAGCAGCTCTTGTCGGAGCAAGAAGCTGGGTC
GTTAACATCGGAAGGTAAGGGTCTGGCGCCTGGTGCTTCTGCCTCATCCT
CGTCTTCGAGCAAGAAAAAGAAGCCCGACATGGATTACGTAGAGCGACTG
GCAGCCTTGACCTTGGCCGAAGAGGATATCTTAAAGCTGACCCCGTCCCG
GGTGACCTCTATGGTGGTGCATCCTTCGGAACGGACCTTGGTGGTGGTGG
CGTCAGACGTAGACGGGCACTTGGGCGTGTGGCGGGTGGATGGGGACAAG
GACGTGTTTCAATTCCGCCCACACATTGCCAAGATCTCTTCGATGCAGTA
CTCCCCCGGCGACCCCTCAAAGCTAATCTCATCTTCTCACGACGGTACTG
TTCGTTGTCTCGATTTGGAGAAAGAGGCATTTGATTTGCTGGTGGCAACG
GACGAGAAATTCCAGGATTCGGGTTTCACGTGTGCATCGCAGGCAGCCCA
CTCTCCTGATAAGTTGTACTTGGCAGGTCACGAGGGCAGCACGGGTCTGC
TCGACGTTCGTTCGCGGACGCTGGCTTGGGTCCATGGGGAGGCGCACGGA
AAAAAGGTGAATAGCATCGAGGCTCACCCAACGCGGGAACATTTATTTGT
GTCGTCTTCGACCGATCGTGCGGTCACTCTGTGGGATGACCGAAAGCCGA
AGAAAGAGGTCTGGACGATCGCACACACCAACAGCATCAACAATGCCACC
TTCAATCCCACGGGGGCCCATCTCCTCATAACCTGTCAGAATCATATGCT
CTACCTGCACGCCGATCCCATCGCAGCCAAATTTACCGCTTCCAACCCCC
CGGACGTGACCACTGCCCACTATCGCATCAAGCACAATAATAACACAGGC
CGATGGCTCTCAAAGTTTTGGCCAACCTGGGACCCGAAGCACCCCGATGC
ATTTGTGATTGGTAGTTTAGAACAGCCCAGGCGCATTGAGGTGTTTTCGG
CAAGTTCTGGCTTCCAGATTGCATCGGTGCGGTCGGAGTGGATGAATAGC
GTGCAGTCCATTAATCAGTTTCATCCCACCCGAAATATCTTGGTGGGTGC
CAACTCTTCGGGGCGTGTACATTCTTATAGGGGACCTGGAGAGGAACGGA
GATAAGGGGTTTTGGGAGATTTAAAAACGTACATAAAGAGGAAGCATGAT
ACTGTTGCTGGTAAGGGGCAGCGGAGAGAAGGCGACAAACAGGAATAAAG
AAATATTGCTGTAGTGC

protein sequence of jgi.p|Nanoce1779_2|592423

>mRNA_5403-protein ID=mRNA_5403-protein|Name=jgi.p|Nanoce1779_2|592423|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MHSVPTYTATARRRSTRACPVVENNDVHVKEELTVVPSAIEGTIAMNGNR
GDESSAMSAFELERLENIRRNQEVLRSLGLGATRSEMGLNAAAQRIQQVR
KKTVGSNPGLKPVKREPRAPTRRSARMEGKDAPFYSEEKLIMEVEARSAR
EEEKRMDEGPLTLETLNRSEEGGADFLGLLKQLLSEQEAGSLTSEGKGLA
PGASASSSSSSKKKKPDMDYVERLAALTLAEEDILKLTPSRVTSMVVHPS
ERTLVVVASDVDGHLGVWRVDGDKDVFQFRPHIAKISSMQYSPGDPSKLI
SSSHDGTVRCLDLEKEAFDLLVATDEKFQDSGFTCASQAAHSPDKLYLAG
HEGSTGLLDVRSRTLAWVHGEAHGKKVNSIEAHPTREHLFVSSSTDRAVT
LWDDRKPKKEVWTIAHTNSINNATFNPTGAHLLITCQNHMLYLHADPIAA
KFTASNPPDVTTAHYRIKHNNNTGRWLSKFWPTWDPKHPDAFVIGSLEQP
RRIEVFSASSGFQIASVRSEWMNSVQSINQFHPTRNILVGANSSGRVHSY
RGPGEERR*

mRNA from alignment at scaffold_13:358954..361020+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5403 ID=mRNA_5403|Name=jgi.p|Nanoce1779_2|592423|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at scaffold_13:358954..361020+ (Nannochloropsis oceanica)
CAGACAAGCCATGGCGGGCAAGAACCTGAAAAAGGCGGCCAGCGGAAAGG
GAGTTGCCATCAAACAGGAGACTCCCACGGCGACAATGCGCCAAAGCACA
GCTGAACGCGGCAACAATACGGCCATTCGCAACAAACGTAAGGCTGTATC
GGATGGGCCGACAGGGGGGAAGTCGAGCGAGGAAGACACAGTAGGTAGGC
ATCGCGCGAGCAAAGTGGGTATAGGGAGACGACGCGGAAACATAAAACCT
CCCTTCTCCACGTCATCCACTCCCTCACATGCATTCCGTCCCCACATACA
CCGCAACAGCGCGTCGTCGATCGACGCGTGCCTGCCCTGTGGTCGAGAAT
AATGATGTGCATGTGAAGGAAGAGCTGACGGTGGTCCCATCTGCGATCGA
GGGCACGATAGCCATGAACGGTAATAGAGGTGACGAAAGCAGTGCCATGT
CAGCCTTTGAGCTCGAGCGTTTGGAGAACATTCGACGTAACCAGGAGGTT
CTGCGATCTTTAGGTTTGGGGGCCACTCGATCGGAGATGGGCTTGAATGC
CGCCGCTCAGCGCATTCAACAGGTCCGCAAAAAGACCGTGGGCAGCAATC
CTGGCCTCAAGCCCGTCAAGCGGGAGCCCCGCGCGCCTACTCGGCGATCC
GCGCGGATGGAAGGCAAGGATGCTCCGTTCTATAGCGAAGAAAAACTCAT
CATGGAGGTGGAGGCAAGGTCAGCGAGAGAGGAGGAGAAGCGCATGGACG
AAGGCCCTCTAACACTCGAGACGTTGAATCGCTCGGAGGAAGGTGGTGCT
GATTTTTTAGGGCTGCTCAAGCAGCTCTTGTCGGAGCAAGAAGCTGGGTC
GTTAACATCGGAAGGTAAGGGTCTGGCGCCTGGTGCTTCTGCCTCATCCT
CGTCTTCGAGCAAGAAAAAGAAGCCCGACATGGATTACGTAGAGCGACTG
GCAGCCTTGACCTTGGCCGAAGAGGATATCTTAAAGCTGACCCCGTCCCG
GGTGACCTCTATGGTGGTGCATCCTTCGGAACGGACCTTGGTGGTGGTGG
CGTCAGACGTAGACGGGCACTTGGGCGTGTGGCGGGTGGATGGGGACAAG
GACGTGTTTCAATTCCGCCCACACATTGCCAAGATCTCTTCGATGCAGTA
CTCCCCCGGCGACCCCTCAAAGCTAATCTCATCTTCTCACGACGGTACTG
TTCGTTGTCTCGATTTGGAGAAAGAGGCATTTGATTTGCTGGTGGCAACG
GACGAGAAATTCCAGGATTCGGGTTTCACGTGTGCATCGCAGGCAGCCCA
CTCTCCTGATAAGTTGTACTTGGCAGGTCACGAGGGCAGCACGGGTCTGC
TCGACGTTCGTTCGCGGACGCTGGCTTGGGTCCATGGGGAGGCGCACGGA
AAAAAGGTGAATAGCATCGAGGCTCACCCAACGCGGGAACATTTATTTGT
GTCGTCTTCGACCGATCGTGCGGTCACTCTGTGGGATGACCGAAAGCCGA
AGAAAGAGGTCTGGACGATCGCACACACCAACAGCATCAACAATGCCACC
TTCAATCCCACGGGGGCCCATCTCCTCATAACCTGTCAGAATCATATGCT
CTACCTGCACGCCGATCCCATCGCAGCCAAATTTACCGCTTCCAACCCCC
CGGACGTGACCACTGCCCACTATCGCATCAAGCACAATAATAACACAGGC
CGATGGCTCTCAAAGTTTTGGCCAACCTGGGACCCGAAGCACCCCGATGC
ATTTGTGATTGGTAGTTTAGAACAGCCCAGGCGCATTGAGGTGTTTTCGG
CAAGTTCTGGCTTCCAGATTGCATCGGTGCGGTCGGAGTGGATGAATAGC
GTGCAGTCCATTAATCAGTTTCATCCCACCCGAAATATCTTGGTGGGTGC
CAACTCTTCGGGGCGTGTACATTCTTATAGGGGACCTGGAGAGGAACGGA
GATAAGGGGTTTTGGGAGATTTAAAAACGTACATAAAGAGGAAGCATGAT
ACTGTTGCTGGTAAGGGGCAGCGGAGAGAAGGCGACAAACAGGAATAAAG
AAATATTGCTGTAGTGC

Coding sequence (CDS) from alignment at scaffold_13:358954..361020+

>mRNA_5403 ID=mRNA_5403|Name=jgi.p|Nanoce1779_2|592423|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_13:358954..361020+ (Nannochloropsis oceanica)
ATGCATTCCGTCCCCACATACACCGCAACAGCGCGTCGTCGATCGACGCG
TGCCTGCCCTGTGGTCGAGAATAATGATGTGCATGTGAAGGAAGAGCTGA
CGGTGGTCCCATCTGCGATCGAGGGCACGATAGCCATGAACGGTAATAGA
GGTGACGAAAGCAGTGCCATGTCAGCCTTTGAGCTCGAGCGTTTGGAGAA
CATTCGACGTAACCAGGAGGTTCTGCGATCTTTAGGTTTGGGGGCCACTC
GATCGGAGATGGGCTTGAATGCCGCCGCTCAGCGCATTCAACAGGTCCGC
AAAAAGACCGTGGGCAGCAATCCTGGCCTCAAGCCCGTCAAGCGGGAGCC
CCGCGCGCCTACTCGGCGATCCGCGCGGATGGAAGGCAAGGATGCTCCGT
TCTATAGCGAAGAAAAACTCATCATGGAGGTGGAGGCAAGGTCAGCGAGA
GAGGAGGAGAAGCGCATGGACGAAGGCCCTCTAACACTCGAGACGTTGAA
TCGCTCGGAGGAAGGTGGTGCTGATTTTTTAGGGCTGCTCAAGCAGCTCT
TGTCGGAGCAAGAAGCTGGGTCGTTAACATCGGAAGGTAAGGGTCTGGCG
CCTGGTGCTTCTGCCTCATCCTCGTCTTCGAGCAAGAAAAAGAAGCCCGA
CATGGATTACGTAGAGCGACTGGCAGCCTTGACCTTGGCCGAAGAGGATA
TCTTAAAGCTGACCCCGTCCCGGGTGACCTCTATGGTGGTGCATCCTTCG
GAACGGACCTTGGTGGTGGTGGCGTCAGACGTAGACGGGCACTTGGGCGT
GTGGCGGGTGGATGGGGACAAGGACGTGTTTCAATTCCGCCCACACATTG
CCAAGATCTCTTCGATGCAGTACTCCCCCGGCGACCCCTCAAAGCTAATC
TCATCTTCTCACGACGGTACTGTTCGTTGTCTCGATTTGGAGAAAGAGGC
ATTTGATTTGCTGGTGGCAACGGACGAGAAATTCCAGGATTCGGGTTTCA
CGTGTGCATCGCAGGCAGCCCACTCTCCTGATAAGTTGTACTTGGCAGGT
CACGAGGGCAGCACGGGTCTGCTCGACGTTCGTTCGCGGACGCTGGCTTG
GGTCCATGGGGAGGCGCACGGAAAAAAGGTGAATAGCATCGAGGCTCACC
CAACGCGGGAACATTTATTTGTGTCGTCTTCGACCGATCGTGCGGTCACT
CTGTGGGATGACCGAAAGCCGAAGAAAGAGGTCTGGACGATCGCACACAC
CAACAGCATCAACAATGCCACCTTCAATCCCACGGGGGCCCATCTCCTCA
TAACCTGTCAGAATCATATGCTCTACCTGCACGCCGATCCCATCGCAGCC
AAATTTACCGCTTCCAACCCCCCGGACGTGACCACTGCCCACTATCGCAT
CAAGCACAATAATAACACAGGCCGATGGCTCTCAAAGTTTTGGCCAACCT
GGGACCCGAAGCACCCCGATGCATTTGTGATTGGTAGTTTAGAACAGCCC
AGGCGCATTGAGGTGTTTTCGGCAAGTTCTGGCTTCCAGATTGCATCGGT
GCGGTCGGAGTGGATGAATAGCGTGCAGTCCATTAATCAGTTTCATCCCA
CCCGAAATATCTTGGTGGGTGCCAACTCTTCGGGGCGTGTACATTCTTAT
AGGGGACCTGGAGAGGAACGGAGATAA

Synonyms

Publications