jgi.p|Nanoce1779_2|592418, mRNA_5400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592418
Unique NamemRNA_5400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1365
Alignment locationscaffold_13:345059..346423 +

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Properties
Property NameValue
TranscriptId592504
TrackFilteredModels2
ProteinId592418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:345059..346423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592418gene_5400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592418mRNA_5400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5400CDS_5400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5400 ID=mRNA_5400|Name=jgi.p|Nanoce1779_2|592418|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
AGCTTCTCAAGTAAGCCATCCTTGCACACAGGAGCTGGAGATGTCAAGAT
GACGGCCGCTTGTTCTTTCCTTCGTCGTTCACGCATGCATCACAAGAGCC
AGCTTTGGGTTGCATCCTTGTCACCACTACGTCCCACCCTCCACCGCGTC
GCGCAGGCAGACATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCC
GTCGTCGTCCTCCTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGT
CTTTCGGTTTACGTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAAC
CTAGACCTCCGCGCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAG
ACGAGCATTTCAAAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCC
TGAGCGATGCAGACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAG
GCTCGGCCCGTAGTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTT
GGTGCGGGAGCCCGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAG
ATTGTTCTTACATGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTG
GAGGTCCCCGCGTATGGCAATGACACGGTTTTCTGTAACATGGAATTGGT
GCTCCAGACACTCTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGG
CCGTGCATTCCGCCTTCAAAATGGTGCAGAAGGATCCAATGGCTACATAT
TTGGCGTACGATAACGTCGATCACCCCGTCATCCGCACACATCCCGAGAC
CGGTGCCCTCGCCCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGG
GCATGACAGACGAAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATT
ATGACCAGGTCCGAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATT
GGTGCTTTGGGACAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATA
CTCGACAGCGGAGGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCT
AGGTAGCTTCAAAAGCGGACATATATGTCTATCGAAATTGAGCAATGTGA
GAGCAGGAAAATTGCCCGTAATATAGAGAATCCTAACAGAAGGGTTGGCC
TGCGACTTAAATGAGAGGAGAAAAGTGGAAGAATTGGAAGGAGTTGGATT
ATTCGTTGTAGTAGTAGTGTTTTTTGTGTGTGGACTTTCTTGTTTAATAA
ATCTCAGTAAATCTCATGTTGAATACGTAAATACAAGTCTCGGTGCTATC
CGCTTGCTGATTTTGTCGGGTGGTCGGGTAGGAGTGGGAGAAGAAGGAAA
CTTCTCTGTAGCATG
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protein sequence of jgi.p|Nanoce1779_2|592418

>mRNA_5400-protein ID=mRNA_5400-protein|Name=jgi.p|Nanoce1779_2|592418|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MTAACSFLRRSRMHHKSQLWVASLSPLRPTLHRVAQADMLSSSLSSFSLF
PSSSSFSSMASIALAPKSFGLRPLTGAMGAELTNLDLRAVSCSSQIADEI
RRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHE
LVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMEL
VLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYDNVDHPVIRTHPE
TGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDT
LVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR*
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mRNA from alignment at scaffold_13:345059..346423+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5400 ID=mRNA_5400|Name=jgi.p|Nanoce1779_2|592418|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at scaffold_13:345059..346423+ (Nannochloropsis oceanica)
AGCTTCTCAAGTAAGCCATCCTTGCACACAGGAGCTGGAGATGTCAAGAT
GACGGCCGCTTGTTCTTTCCTTCGTCGTTCACGCATGCATCACAAGAGCC
AGCTTTGGGTTGCATCCTTGTCACCACTACGTCCCACCCTCCACCGCGTC
GCGCAGGCAGACATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCC
GTCGTCGTCCTCCTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGT
CTTTCGGTTTACGTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAAC
CTAGACCTCCGCGCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAG
ACGAGCATTTCAAAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCC
TGAGCGATGCAGACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAG
GCTCGGCCCGTAGTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTT
GGTGCGGGAGCCCGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAG
ATTGTTCTTACATGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTG
GAGGTCCCCGCGTATGGCAATGACACGGTTTTCTGTAACATGGAATTGGT
GCTCCAGACACTCTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGG
CCGTGCATTCCGCCTTCAAAATGGTGCAGAAGGATCCAATGGCTACATAT
TTGGCGTACGATAACGTCGATCACCCCGTCATCCGCACACATCCCGAGAC
CGGTGCCCTCGCCCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGG
GCATGACAGACGAAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATT
ATGACCAGGTCCGAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATT
GGTGCTTTGGGACAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATA
CTCGACAGCGGAGGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCT
AGGTAGCTTCAAAAGCGGACATATATGTCTATCGAAATTGAGCAATGTGA
GAGCAGGAAAATTGCCCGTAATATAGAGAATCCTAACAGAAGGGTTGGCC
TGCGACTTAAATGAGAGGAGAAAAGTGGAAGAATTGGAAGGAGTTGGATT
ATTCGTTGTAGTAGTAGTGTTTTTTGTGTGTGGACTTTCTTGTTTAATAA
ATCTCAGTAAATCTCATGTTGAATACGTAAATACAAGTCTCGGTGCTATC
CGCTTGCTGATTTTGTCGGGTGGTCGGGTAGGAGTGGGAGAAGAAGGAAA
CTTCTCTGTAGCATG
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Coding sequence (CDS) from alignment at scaffold_13:345059..346423+

>mRNA_5400 ID=mRNA_5400|Name=jgi.p|Nanoce1779_2|592418|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_13:345059..346423+ (Nannochloropsis oceanica)
ATGACGGCCGCTTGTTCTTTCCTTCGTCGTTCACGCATGCATCACAAGAG
CCAGCTTTGGGTTGCATCCTTGTCACCACTACGTCCCACCCTCCACCGCG
TCGCGCAGGCAGACATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTT
CCGTCGTCGTCCTCCTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAA
GTCTTTCGGTTTACGTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCA
ACCTAGACCTCCGCGCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATC
AGACGAGCATTTCAAAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGG
CCTGAGCGATGCAGACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGG
AGGCTCGGCCCGTAGTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAG
TTGGTGCGGGAGCCCGGTAAACTCGGGCACTACGGAGAGATCTGGCACCA
AGATTGTTCTTACATGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTG
TGGAGGTCCCCGCGTATGGCAATGACACGGTTTTCTGTAACATGGAATTG
GTGCTCCAGACACTCTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCG
GGCCGTGCATTCCGCCTTCAAAATGGTGCAGAAGGATCCAATGGCTACAT
ATTTGGCGTACGATAACGTCGATCACCCCGTCATCCGCACACATCCCGAG
ACCGGTGCCCTCGCCCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTT
GGGCATGACAGACGAAGAAAGCCGACCCATACTCCAACATTTGTTCGAGA
TTATGACCAGGTCCGAGCTTCAGTGCCGGGTACGATATGAGAAGGATACA
TTGGTGCTTTGGGACAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAA
TACTCGACAGCGGAGGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTC
CTAGGTAG
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Synonyms
Publications