jgi.p|Nanoce1779_2|577636, mRNA_540 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577636
Unique NamemRNA_540
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1400
Alignment locationscaffold_3:1307810..1309209 +

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Properties
Property NameValue
TranscriptId577722
TrackFilteredModels2
ProteinId577636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1307810..1309209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577636gene_540Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577636mRNA_540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_540CDS_540Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_540 ID=mRNA_540|Name=jgi.p|Nanoce1779_2|577636|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CCTTTGGGAGCCAGGGAGGGGGAGAGGGAGGGAGGGGGGTCAAGAGGGGG
GAAGATGTGATAGAGAGGGGAGGAGGAGAGGGAGGAGGTGGTGCAGGAGC
AACTGCACATGAAGGAGGGAGTGGAGGGAGCAGTGCGACTGATACAGCGG
GGATGATGGCTGGCAGAGGAGGAGGAGAGGGAGGAGGAGGAGAGGGAGGG
GGAGGAAGAGCGACGGGAGGAGGAACAGGAGAGCAGGCGGGGACAGGAAC
AAAAGCACTCGCAGGAGTAGGAGCAGGGACGACTGCGACGCGTTGCTCGC
AGTGTGCGGTCAAGGCGCAGGGAGACCGGCAATTGATGACGTGTGGTCGG
TGTCGGGAGGCGTGTTACTGCTCGAAGGAATGTCAGACGAAGCATTGGGT
GCTTCACAGACAGCAGTGCGGTCCGGATCCTTTGACAGTGGCGGTGGAGA
GCGGGGGAGAGGAGAGAGGGCGTTAGCCGCAGCTAAAGCAAAAGCAGCAG
GAGCAGCAGGTGCAGGAGGAGAGGGATCGAGAAGGAAAAGAAAAAGGGAA
GTATAGAATAAACGAGCGAGGGAAGATCGAATGAATCGCGGGGTTTACGA
TGAATGGACGGAGGGATGGAGGGGAGTGGGGAGGGGGAAATACCAGTGAT
ATAGAAATGTGTAGAGGTGCACACTAACAGAGGATAACAGTGAGAGGTAC
GTCAAACGCCATGAGGACAGTGAGGAGCTTGCAACAGACATGATGACGGT
GAACATGTTGTAGAAAGGAAAAAAGGCATGGTCAAAATCAAAGAAAGACA
TGACGAGAGAGAGGAGAGGACGAGAAACGTGAAGAGGAATGAGACCCGGG
ACACCAAGAATGAGAAGGAGATAAAGAACAAGAAAAACAGAAAAAGGGGA
ACTTACATCAAGTTCACACCCTAAAACAACGTAACACGGAATACACCGGG
ATGCGAGGGGAGAGAGGGAGAGAAGGAAGGAGGGAGACAGGAAGAGAGGG
AGGAAGAAGATTATTTTTGGAGTACGTGCGCACAAGATGAAAAACGTCGG
TCAGAGAAAGACAGCAAATGCGGAGATAGAGAGAGAAACGGATCGGTTGA
AAGCTGTCGAGAGAGAGAGAGATGGCGTTTCGAGAGCGCCGCGACACAGT
GTGGTTGAAAAGATCTACATACAAGGGCGGCAAATGAGAAAATATTTGAA
AGAGCAGGGAGGACGCGAGAGGGAAGGAATGCTCTTTATAGTGGTATCGA
TGTGTGTATGTGTGGGTGGGTCCAAGAGGCATGGGCGAGACATGACGAAG
AAAGAGAGAGAGATATTGACAAGATCAACGATTGAAAATGTGTGCGCGGG
CATCAAGAATAAACAAGAAAAGAACGACTTACACCATTGACAGAAAGAAA
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protein sequence of jgi.p|Nanoce1779_2|577636

>mRNA_540-protein ID=mRNA_540-protein|Name=jgi.p|Nanoce1779_2|577636|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MMAGRGGGEGGGGEGGGGRATGGGTGEQAGTGTKALAGVGAGTTATRCSQ
CAVKAQGDRQLMTCGRCREACYCSKECQTKHWVLHRQQCGPDPLTVAVES
GGEERGR*
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mRNA from alignment at scaffold_3:1307810..1309209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_540 ID=mRNA_540|Name=jgi.p|Nanoce1779_2|577636|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp|location=Sequence derived from alignment at scaffold_3:1307810..1309209+ (Nannochloropsis oceanica)
CCTTTGGGAGCCAGGGAGGGGGAGAGGGAGGGAGGGGGGTCAAGAGGGGG
GAAGATGTGATAGAGAGGGGAGGAGGAGAGGGAGGAGGTGGTGCAGGAGC
AACTGCACATGAAGGAGGGAGTGGAGGGAGCAGTGCGACTGATACAGCGG
GGATGATGGCTGGCAGAGGAGGAGGAGAGGGAGGAGGAGGAGAGGGAGGG
GGAGGAAGAGCGACGGGAGGAGGAACAGGAGAGCAGGCGGGGACAGGAAC
AAAAGCACTCGCAGGAGTAGGAGCAGGGACGACTGCGACGCGTTGCTCGC
AGTGTGCGGTCAAGGCGCAGGGAGACCGGCAATTGATGACGTGTGGTCGG
TGTCGGGAGGCGTGTTACTGCTCGAAGGAATGTCAGACGAAGCATTGGGT
GCTTCACAGACAGCAGTGCGGTCCGGATCCTTTGACAGTGGCGGTGGAGA
GCGGGGGAGAGGAGAGAGGGCGTTAGCCGCAGCTAAAGCAAAAGCAGCAG
GAGCAGCAGGTGCAGGAGGAGAGGGATCGAGAAGGAAAAGAAAAAGGGAA
GTATAGAATAAACGAGCGAGGGAAGATCGAATGAATCGCGGGGTTTACGA
TGAATGGACGGAGGGATGGAGGGGAGTGGGGAGGGGGAAATACCAGTGAT
ATAGAAATGTGTAGAGGTGCACACTAACAGAGGATAACAGTGAGAGGTAC
GTCAAACGCCATGAGGACAGTGAGGAGCTTGCAACAGACATGATGACGGT
GAACATGTTGTAGAAAGGAAAAAAGGCATGGTCAAAATCAAAGAAAGACA
TGACGAGAGAGAGGAGAGGACGAGAAACGTGAAGAGGAATGAGACCCGGG
ACACCAAGAATGAGAAGGAGATAAAGAACAAGAAAAACAGAAAAAGGGGA
ACTTACATCAAGTTCACACCCTAAAACAACGTAACACGGAATACACCGGG
ATGCGAGGGGAGAGAGGGAGAGAAGGAAGGAGGGAGACAGGAAGAGAGGG
AGGAAGAAGATTATTTTTGGAGTACGTGCGCACAAGATGAAAAACGTCGG
TCAGAGAAAGACAGCAAATGCGGAGATAGAGAGAGAAACGGATCGGTTGA
AAGCTGTCGAGAGAGAGAGAGATGGCGTTTCGAGAGCGCCGCGACACAGT
GTGGTTGAAAAGATCTACATACAAGGGCGGCAAATGAGAAAATATTTGAA
AGAGCAGGGAGGACGCGAGAGGGAAGGAATGCTCTTTATAGTGGTATCGA
TGTGTGTATGTGTGGGTGGGTCCAAGAGGCATGGGCGAGACATGACGAAG
AAAGAGAGAGAGATATTGACAAGATCAACGATTGAAAATGTGTGCGCGGG
CATCAAGAATAAACAAGAAAAGAACGACTTACACCATTGACAGAAAGAAA
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Coding sequence (CDS) from alignment at scaffold_3:1307810..1309209+

>mRNA_540 ID=mRNA_540|Name=jgi.p|Nanoce1779_2|577636|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_3:1307810..1309209+ (Nannochloropsis oceanica)
ATGATGGCTGGCAGAGGAGGAGGAGAGGGAGGAGGAGGAGAGGGAGGGGG
AGGAAGAGCGACGGGAGGAGGAACAGGAGAGCAGGCGGGGACAGGAACAA
AAGCACTCGCAGGAGTAGGAGCAGGGACGACTGCGACGCGTTGCTCGCAG
TGTGCGGTCAAGGCGCAGGGAGACCGGCAATTGATGACGTGTGGTCGGTG
TCGGGAGGCGTGTTACTGCTCGAAGGAATGTCAGACGAAGCATTGGGTGC
TTCACAGACAGCAGTGCGGTCCGGATCCTTTGACAGTGGCGGTGGAGAGC
GGGGGAGAGGAGAGAGGGCGTTAG
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Synonyms
Publications