jgi.p|Nanoce1779_2|576041, mRNA_54 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576041
Unique Name	mRNA_54
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1208
Alignment location	scaffold_3:147011..148218 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576127
Track	FilteredModels2
ProteinId	576041

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:147011..148218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576041	gene_54	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576041	mRNA_54-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_54	CDS_54	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:147011..148218+
coding sequence from alignment at scaffold_3:147011..148218+

mRNA sequence

>mRNA_54 ID=mRNA_54|Name=jgi.p|Nanoce1779_2|576041|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
CGGAGGGGGGGAGGAGTTGGGCGGAGGAAGGCGAGGATACCGCGTTTGGT
GGTGGTGGTGGTGGTGGTTGTATTGCTGTTGCTGCTGTTGTTGTTGTTAG
TGCTGGTGCCATCGTCGTCGGCGAATGATGCCCGCCAGCTCTCAGTGTCC
ACGAAGTCGCCGAGGGCGGGGGAGGGGGCTGGAGAAAGGGAGGGATTCAT
GACCGCGGCTGCCGGGGCCACATATGTGACTGCTGCTACGTCTGCTGGTG
CTGGTGCTGCTTTTTCTGCTGGTGCCTCAGCTCCTGGTAGAATATCTGGT
TCTACTACCGACGAGGAAGATAATGGCATGGGTGGTAGTATTTGATTTGG
CACCCCTTTCCGATCTTGCTCGTTCTCTTGGCGTGATGCTCCTGCTGCCG
TGACCGTTGCTAGTGCTGGTGCTCCTGCTGCTGCTGTCATTTCAACCCTT
TTGCTTCCTCCTCCCCCCCCCCCCTCCTTCGACTTCAATCGCCTTTTTTT
TACGCCGAGTCAAAGATAGCAATGTGGAGGACTGTGCCATCGCGACCGGA
AGACTGCGCGAAGACATTTGTAGTAATCGGCTCAAAAAAGGGTCATCGTC
TTCTTCCTGATGCAGCTGCTTCTGCTGTAATTGCGCATCCCTTGGTGCTG
CGGCTGTAGATGATTCATCTTTCTTGTCCGAACGATGACGCTTCCTACTG
CCGAGCTGGGTCTGGGGCTGGTGCTGGGGAAGATGAGGTGGAGTGGGGGG
AGGAGGCGTGGGTGCAGGAGGGATGATCTCAGGCTCCTCTCGGAGGCGCA
CGCCCTTTCTTCCCATTGCTCCACTTCTGGATTGCGTTATGGTCCTCCTC
GGTGGCAACGTCGCGGCGGCAGCTTCTGCATCTACTCCTGTCCGTAGCGG
TAGTGCTGCTGGTGCCGCTGTAGCGGGTTTATTGCCCTTGCCGCTGCTGC
TGCCGCCGAAGAAGGAGAGGATGGAGCCGCTCCCTGTGATTGGCGGCGCA
GGGGCTTTCTTGCGTCCGCCACCGCCACCATCACCGCGCTCCATGGCACC
CCAGACCTCGATGGTACCGGTGGATATGTGTGGGGAGGTGTGGCATGATT
AAAGTTAGGTGGAAAAAAGAGAGAGTAGGAACGCAAAATCGCTGCGGCTT
TCCTTGGCGAGGCATGGGACGGGCCGCTCGGGCCCCGGGGTCAGACACGA
GAGAGCGA

protein sequence of jgi.p|Nanoce1779_2|576041

>mRNA_54-protein ID=mRNA_54-protein|Name=jgi.p|Nanoce1779_2|576041|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MISGSSRRRTPFLPIAPLLDCVMVLLGGNVAAAASASTPVRSGSAAGAAV
AGLLPLPLLLPPKKERMEPLPVIGGAGAFLRPPPPPSPRSMAPQTSMVPV
DMCGEVWHD*

mRNA from alignment at scaffold_3:147011..148218+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_54 ID=mRNA_54|Name=jgi.p|Nanoce1779_2|576041|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp|location=Sequence derived from alignment at scaffold_3:147011..148218+ (Nannochloropsis oceanica)
CGGAGGGGGGGAGGAGTTGGGCGGAGGAAGGCGAGGATACCGCGTTTGGT
GGTGGTGGTGGTGGTGGTTGTATTGCTGTTGCTGCTGTTGTTGTTGTTAG
TGCTGGTGCCATCGTCGTCGGCGAATGATGCCCGCCAGCTCTCAGTGTCC
ACGAAGTCGCCGAGGGCGGGGGAGGGGGCTGGAGAAAGGGAGGGATTCAT
GACCGCGGCTGCCGGGGCCACATATGTGACTGCTGCTACGTCTGCTGGTG
CTGGTGCTGCTTTTTCTGCTGGTGCCTCAGCTCCTGGTAGAATATCTGGT
TCTACTACCGACGAGGAAGATAATGGCATGGGTGGTAGTATTTGATTTGG
CACCCCTTTCCGATCTTGCTCGTTCTCTTGGCGTGATGCTCCTGCTGCCG
TGACCGTTGCTAGTGCTGGTGCTCCTGCTGCTGCTGTCATTTCAACCCTT
TTGCTTCCTCCTCCCCCCCCCCCCTCCTTCGACTTCAATCGCCTTTTTTT
TACGCCGAGTCAAAGATAGCAATGTGGAGGACTGTGCCATCGCGACCGGA
AGACTGCGCGAAGACATTTGTAGTAATCGGCTCAAAAAAGGGTCATCGTC
TTCTTCCTGATGCAGCTGCTTCTGCTGTAATTGCGCATCCCTTGGTGCTG
CGGCTGTAGATGATTCATCTTTCTTGTCCGAACGATGACGCTTCCTACTG
CCGAGCTGGGTCTGGGGCTGGTGCTGGGGAAGATGAGGTGGAGTGGGGGG
AGGAGGCGTGGGTGCAGGAGGGATGATCTCAGGCTCCTCTCGGAGGCGCA
CGCCCTTTCTTCCCATTGCTCCACTTCTGGATTGCGTTATGGTCCTCCTC
GGTGGCAACGTCGCGGCGGCAGCTTCTGCATCTACTCCTGTCCGTAGCGG
TAGTGCTGCTGGTGCCGCTGTAGCGGGTTTATTGCCCTTGCCGCTGCTGC
TGCCGCCGAAGAAGGAGAGGATGGAGCCGCTCCCTGTGATTGGCGGCGCA
GGGGCTTTCTTGCGTCCGCCACCGCCACCATCACCGCGCTCCATGGCACC
CCAGACCTCGATGGTACCGGTGGATATGTGTGGGGAGGTGTGGCATGATT
AAAGTTAGGTGGAAAAAAGAGAGAGTAGGAACGCAAAATCGCTGCGGCTT
TCCTTGGCGAGGCATGGGACGGGCCGCTCGGGCCCCGGGGTCAGACACGA
GAGAGCGA

Coding sequence (CDS) from alignment at scaffold_3:147011..148218+

>mRNA_54 ID=mRNA_54|Name=jgi.p|Nanoce1779_2|576041|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_3:147011..148218+ (Nannochloropsis oceanica)
ATGATCTCAGGCTCCTCTCGGAGGCGCACGCCCTTTCTTCCCATTGCTCC
ACTTCTGGATTGCGTTATGGTCCTCCTCGGTGGCAACGTCGCGGCGGCAG
CTTCTGCATCTACTCCTGTCCGTAGCGGTAGTGCTGCTGGTGCCGCTGTA
GCGGGTTTATTGCCCTTGCCGCTGCTGCTGCCGCCGAAGAAGGAGAGGAT
GGAGCCGCTCCCTGTGATTGGCGGCGCAGGGGCTTTCTTGCGTCCGCCAC
CGCCACCATCACCGCGCTCCATGGCACCCCAGACCTCGATGGTACCGGTG
GATATGTGTGGGGAGGTGTGGCATGATTAA

Synonyms

Publications