jgi.p|Nanoce1779_2|592411, mRNA_5399 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592411
Unique Name	mRNA_5399
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2716
Alignment location	scaffold_13:341605..344880 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592497
Track	FilteredModels2
ProteinId	592411

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:341605..344880 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592411	gene_5399	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592411	mRNA_5399-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5399	CDS_5399	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:341605..344880-
coding sequence from alignment at scaffold_13:341605..344880-

mRNA sequence

>mRNA_5399 ID=mRNA_5399|Name=jgi.p|Nanoce1779_2|592411|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp
ACAGCATCCAAACACAGCACCTGAGTCAGCCAATGCTGCATAATGTGGTT
GCGAAGAGCCGCGCCCGCTTCTTCTTGCGACCCCCGCCATTCTTTCACGG
CCTCTACCTCTGCGTTGACCCGCGGCGCAAACGTCCCGCAATGCATCACC
AAAACCACCACCACTTGGCCGCCAGCGCACATGCTGAAAAGTACTGGTGC
GGGATACCACGTCCTGGATAAATTACCGGTGCCCGCCTATCCACACTTGG
CCCTTGAGCGCCCTTACCTTATGCAACCTATCTGCCTCTCCCCGCCGGGG
GGAGAGAAGAGCAAAATTCTGTACGAGGTGACCTTGGAGCTGGATGAGGA
TATTTTCGAGGCATATTTGACGTGGATTCGGATGGGGCATATTCAGGAAG
TGATGGCTTTACCAGGCTTTGTTGGCTGGCAAATGTCAGTCTCGGAGGAT
GACGCAGCCAAGACCAATGGGGCGAAAGGCCAGAAACGTGTGGTGCTTGT
GGAGACATATGAGGTGGCTTCGCGTGAGACCTTGGAAGAATATTTTACAA
AGTACGCAAAACGGATCCGTGACGACCATAAGCGGATGTGGGATGGCAAG
TTTGCGGCTTCCCGACGCATTCTCCATCGCTTTGGGCTACAGACAGAAAC
GGAAGCGAATCTGTGGAAGCAGCGGGATGGCAAGAATGCCTTTCGTTTAA
AGAACCTGCAGGAGCAACTCGCCCGGGTGCCCCGTTTTACCGCCGACGGG
CTAAAACTTCAAGCGTTGCCGACCCCACTGTGGGAGAAGCTACAAGAATA
CTACAAGGCACACCGGCACGAGTCCGTGGAGGACCGTTTGGATCCCGCAG
AGATTTCGATAAACACATGGGTCGCCCCGACGCTGCGCCTCGACCTTCCC
CCAGCCTTGGCCACCGAGGTGGTCGGCACGCTCAAACCTATCTTAGAAGA
ATGGAGTGGGATTTCTGAGCTCGAGTCAACGGGAATCAGCGGCATTCGGA
CGTATCTGCCAGGGGCCACCATCGCGGAGCACGTGGACATGGCCACGACG
AACGTTATCTCTGCACTCATTAATGTGGATCAAAATGTATCGGGGCTTTG
GCCTTTTGAGATGAAGGACCATGCGGGTAAGTTACATTCGTTGCACATGA
AGCCGGGCGAGGTGGTGATTTATGAGAGTGCGACCTGCGCACATCAGCGT
TCCCACCCTTTGCCGTCGGGGGGGCATTACACCAACCTTTTCATGCGCTT
CAAGCCCAAAGGCTGGACGTTTTCTTATTGAGCTATTATATGAAATTATA
GTTTTGTGAAAGTGATTCCGTGGGATTTTCAACGGGGGGCACGTGTGTGA
CGTGCATGCAGCACGTACTGAGCGTTTTATGGCAAGCAAGCGAGGGAGAG
ATAAAGCGGGACTAAAGAATGAGGAGAATGTGTTGATTGACTGTAGCACA
CAGTGGAATAGAAGACGGGGGAAATTTGTGTCATTATTAATTATTAGAAT
GACAATGTTCAGTAGAGAAGCGAGGAGAAGAGGGGGGGGGTGGAGGTTGG
GAAATGAGATATTAGTGTTGTACATCGTATTTTTTTGTTTCATAGTTGTT
AAAGCTCGTACTCTTCTATTTGTGCTGAATATGAGCTGCAGGAAAGCTCC
CAAGAAGCGGCTACTGTTGCGAAAGGAGCAACAATCACATTAAAACAATA
ACAACAGCACCAGCTTCAAAGGGTCCACGTAGTAATTGACTTGTGTTTTA
AATGTACATGATGTTTTTCTTCTTATACTGACATTAGACCCGGACCAGGT
GAGGGAGCTGGTGCAGGGTCCAGATGGCAGAATCTTCTCTGATAACGACA
AGGGACTGTTTCAAGCTGAAAGAAGAAAAGGAAAGTATCTCTAGACGGCC
TGCTTTTCTTCTTTGTTTTCACAACCGTCACACAAACACGCCTTTAAATA
TAATCCAACCCACCTAGGTTCTTTTGTTGCTCTTTTTTCACACACTCATG
GACCCTCTCCGCATCTTTCTTGCGCATTCGCTCTCTCCCCCTCCATCCTC
TGTCTATTTCTCGTCCTCTATCGTGCTCTTCTTCCTCCCTTCGCTTCCGC
GTGCCGATCTTTCCCCCTCCACCGTCCGTCCCCATTATTTTCCGCCTTCC
AGAAAATATTTCTTTTTATCGCTGCAGGGTGTGTGCCACTCTTCTACTCA
TTTCCCATTTCCCCCCAACAGAATAGCCATTATTGCCAGCAAGATACACA
TGCCTGCACCGGTCCACTCACAACCCCCCCCTTCCTCGCAGCCCAGACGC
CGACACAACAAACATGCTTGGCTTACTCTTTCTGCTTCTTTTTGGGAGGC
GCATCTTCGTCCGCGTCGTCGTCCTCGTCCTCGTTGTCGTCCTCGTCCTC
CTCTCCACCTTGGGCGGCACTGTCACCCTCGTCGTCTTCGTTATCGTCAT
CGTCATCGTCATCGTCATCGTCACCGCCGCTCGCTTGTTCACCGCCGGCT
TCCTCGTCCTCGTCCTCGTCCTCGTCCTCCGAATCTTCCTCCTCGCTATC
ATCGTCGCTGCTGCCATCATCGTTTCCTTCATCATCCTCGTCCTCCTCCT
CACCCTCCACGTAGTCCTCGTCATCCTCATCGCTGTCGTCCTCGTCCACA
TCCACCACGTTCTTGGCCTTTTCCTCGGAGTCGCTCATTGCTTTTCAGGT
TGATAAGGTAGGCTTC

protein sequence of jgi.p|Nanoce1779_2|592411

>mRNA_5399-protein ID=mRNA_5399-protein|Name=jgi.p|Nanoce1779_2|592411|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MWLRRAAPASSCDPRHSFTASTSALTRGANVPQCITKTTTTWPPAHMLKS
TGAGYHVLDKLPVPAYPHLALERPYLMQPICLSPPGGEKSKILYEVTLEL
DEDIFEAYLTWIRMGHIQEVMALPGFVGWQMSVSEDDAAKTNGAKGQKRV
VLVETYEVASRETLEEYFTKYAKRIRDDHKRMWDGKFAASRRILHRFGLQ
TETEANLWKQRDGKNAFRLKNLQEQLARVPRFTADGLKLQALPTPLWEKL
QEYYKAHRHESVEDRLDPAEISINTWVAPTLRLDLPPALATEVVGTLKPI
LEEWSGISELESTGISGIRTYLPGATIAEHVDMATTNVISALINVDQNVS
GLWPFEMKDHAGKLHSLHMKPGEVVIYESATCAHQRSHPLPSGGHYTNLF
MRFKPKGWTFSY*

mRNA from alignment at scaffold_13:341605..344880-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5399 ID=mRNA_5399|Name=jgi.p|Nanoce1779_2|592411|organism=Nannochloropsis oceanica|type=mRNA|length=3276bp|location=Sequence derived from alignment at scaffold_13:341605..344880- (Nannochloropsis oceanica)
ACAGCATCCAAACACAGCACCTGAGTCAGCCAATGCTGCATAATGTGGTT
GCGAAGAGCCGCGCCCGCTTCTTCTTGCGACCCCCGCCATTCTTTCACGG
CCTCTACCTCTGCGTTGACCCGCGGCGCAAACGTCCCGCAATGCATCACC
AAAACCACCACCACTTGGCCGCCAGCGCACATGCTGAAAAGTACTGGTGC
GGGATACCACGTCCTGGATAAATTACCGGTGCCCGCCTATCCACACTTGG
CCCTTGAGCGCCCTTACCTTATGCAACCTATCTGCCTCTCCCCGCCGGGG
GGAGAGAAGAGCAAAATTCTGTACGAGGTGACCTTGGAGCTGGATGAGGA
TATTTTCGAGGCATATTTGACGTGGATTCGGATGGGGCATATTCAGGAAG
TGATGGCTTTACCAGGCTTTGTTGGCTGGCAAATGTCAGTCTCGGAGGAT
GACGCAGCCAAGACCAATGGGGCGAAAGGCCAGAAACGTGTGGTGCTTGT
GGAGACATATGAGGTGGCTTCGCGTGAGACCTTGGAAGAATATTTTACAA
AGTACGCAAAACGGATCCGTGACGACCATAAGCGGATGTGGGATGGCAAG
TTTGCGGCTTCCCGACGCATTCTCCATCGCTTTGGGCTACAGACAGAAAC
GGAAGCGAATCTGTGGAAGCAGCGGGATGGCAAGAATGCCTTTCGTTTAA
AGAACCTGCAGGAGCAACTCGCCCGGGTGCCCCGTTTTACCGCCGACGGG
CTAAAACTTCAAGCGTTGCCGACCCCACTGTGGGAGAAGCTACAAGAATA
CTACAAGGCACACCGGCACGAGTCCGTGGAGGACCGTTTGGATCCCGCAG
AGATTTCGATAAACACATGGGTCGCCCCGACGCTGCGCCTCGACCTTCCC
CCAGCCTTGGCCACCGAGGTGGTCGGCACGCTCAAACCTATCTTAGAAGA
ATGGAGTGGGATTTCTGAGCTCGAGTCAACGGGAATCAGCGGCATTCGGA
CGTATCTGCCAGGGGCCACCATCGCGGAGCACGTGGACATGGCCACGACG
AACGTTATCTCTGCACTCATTAATGTGGATCAAAATGTATCGGGGCTTTG
GCCTTTTGAGATGAAGGACCATGCGGGTAAGTTACATTCGTTGCACATGA
AGCCGGGCGAGGTGGTGATTTATGAGAGTGCGACCTGCGCACATCAGCGT
TCCCACCCTTTGCCGTCGGGGGGGCATTACACCAACCTTTTCATGCGCTT
CAAGCCCAAAGGCTGGACGTTTTCTTATTGAGCTATTATATGAAATTATA
GTTTTGTGAAAGTGATTCCGTGGGATTTTCAACGGGGGGCACGTGTGTGA
CGTGCATGCAGCACGTACTGAGCGTTTTATGGCAAGCAAGCGAGGGAGAG
ATAAAGCGGGACTAAAGAATGAGGAGAATGTGTTGATTGACTGTAGCACA
CAGTGGAATAGAAGACGGGGGAAATTTGTGTCATTATTAATTATTAGAAT
GACAATGTTCAGTAGAGAAGCGAGGAGAAGAGGGGGGGGGTGGAGGTTGG
GAAATGAGATATTAGTGTTGTACATCGTATTTTTTTGTTTCATAGTTGTT
AAAGCTCGTACTCTTCTATTTGTGCTGAATATGAGCTGCAGGAAAGCTCC
CAAGAAGCGGCTACTGTTGCGAAAGGAGCAACAATCACATTAAAACAATA
ACAACAGCACCAGCTTCAAAGGGTCCACGTAGTAATTGACTTGTGTTTTA
AATGTACATGATGTTTTTCTTCTTATACTGACATTAGACCCGGACCAGGT
GAGGGAGCTGGTGCAGGGTCCAGATGGCAGAATCTTCTCTGATAACGACA
AGGGACTGTTTCAAGCTGAAAGAAGAAAAGGAAAGTATCTCTAGACGGCC
TGCTTTTCTTCTTTGTTTTCACAACCGTCACACAAACACGCCTTTAAATA
TAATCCAACCCACCTAGGTTCTTTTGTTGCTCTTTTTTCACACACTCATG
GACCCTCTCCGCATCTTTCTTGCGCATTCGCTCTCTCCCCCTCCATCCTC
TGTCTATTTCTCGTCCTCTATCGTGCTCTTCTTCCTCCCTTCGCTTCCGC
GTGCCGATCTTTCCCCCTCCACCGTCCGTCCCCATTATTTTCCGCCTTCC
AGAAAATATTTCTTTTTATCGCTGCAGGGTGTGTGCCACTCTTCTACTCA
TTTCCCATTTCCCCCCAACAGAATAGCCATTATTGCCAGCAAGATACACA
TGCCTGCACCGGTCCACTCACAACCCCCCCCTTCCTCGCAGCCCAGACGC
CGACACAACAAACATGCTTGGCTTACTCTTTCTGCTTCTTTTTGGGAGGC
GCATCTTCGTCCGCGTCGTCGTCCTCGTCCTCGTTGTCGTCCTCGTCCTC
CTCTCCACCTTGGGCGGCACTGTCACCCTCGTCGTCTTCGTTATCGTCAT
CGTCATCGTCATCGTCATCGTCACCGCCGCTCGCTTGTTCACCGCCGGCT
TCCTCGTCCTCGTCCTCGTCCTCGTCCTCCGAATCTTCCTCCTGTCAAAG
ACAAAGAAGGGTGAAAGAAAAGGTGAAAGTGAGAAATGTGGTTGGCACAG
TGATTCACATGTTGTGTTCATGGAAATGTCCCATAGCACTTTGGCGCGGC
ACTCGTCCCCCCCTTCCGCCGTACATATTTTCCATCCTCCCATGACACAT
AAGCAAGAGCTTGGAGTTCTCCGTCGCAATTTACCTCGCTATCATCGTCG
CTGCTGCCATCATCGTTTCCTTCATCATCCTCGTCCTCCTCCTCACCCTC
CACGTAGTCCTCGTCCTGTGTTTGAATTGTTCAAGTAAAGGGAGATACGG
TGAGTTTCCACGCAAAGGTGATCGATCATTCTGTTTCGACGTGAGACATA
GCATGGCAACACCCATACCCATCTCTTGCATCTATCTCCATTGCCAAGGT
CAGTCCGGTAACATCTTGCCGCAGCTCGTGCTTGTAATATCTTGTCGCAC
TTATATACAAGCACGCGCTGCGGCGCCCCGGGGATGCGGGAAATTCCTCA
TCAACGCTACTTACATCCTCATCGCTGTCGTCCTCGTCCACATCCACCAC
GTTCTTGGCCTTTTCCTCGGAGTCGCTCTGTTGATTTCAAAGGTCGGTGA
TAGTAGAGAAAGTGAATGTCTCAACCATCCTATAAACCCTCCCGCCCCAA
CTCCTCCCTCAGTCATCAAATCAGGCGGTAAGAAGACACTCTTACCATTG
CTTTTCAGGTTGATAAGGTAGGCTTC

Coding sequence (CDS) from alignment at scaffold_13:341605..344880-

>mRNA_5399 ID=mRNA_5399|Name=jgi.p|Nanoce1779_2|592411|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_13:341605..344880- (Nannochloropsis oceanica)
ATGTGGTTGCGAAGAGCCGCGCCCGCTTCTTCTTGCGACCCCCGCCATTC
TTTCACGGCCTCTACCTCTGCGTTGACCCGCGGCGCAAACGTCCCGCAAT
GCATCACCAAAACCACCACCACTTGGCCGCCAGCGCACATGCTGAAAAGT
ACTGGTGCGGGATACCACGTCCTGGATAAATTACCGGTGCCCGCCTATCC
ACACTTGGCCCTTGAGCGCCCTTACCTTATGCAACCTATCTGCCTCTCCC
CGCCGGGGGGAGAGAAGAGCAAAATTCTGTACGAGGTGACCTTGGAGCTG
GATGAGGATATTTTCGAGGCATATTTGACGTGGATTCGGATGGGGCATAT
TCAGGAAGTGATGGCTTTACCAGGCTTTGTTGGCTGGCAAATGTCAGTCT
CGGAGGATGACGCAGCCAAGACCAATGGGGCGAAAGGCCAGAAACGTGTG
GTGCTTGTGGAGACATATGAGGTGGCTTCGCGTGAGACCTTGGAAGAATA
TTTTACAAAGTACGCAAAACGGATCCGTGACGACCATAAGCGGATGTGGG
ATGGCAAGTTTGCGGCTTCCCGACGCATTCTCCATCGCTTTGGGCTACAG
ACAGAAACGGAAGCGAATCTGTGGAAGCAGCGGGATGGCAAGAATGCCTT
TCGTTTAAAGAACCTGCAGGAGCAACTCGCCCGGGTGCCCCGTTTTACCG
CCGACGGGCTAAAACTTCAAGCGTTGCCGACCCCACTGTGGGAGAAGCTA
CAAGAATACTACAAGGCACACCGGCACGAGTCCGTGGAGGACCGTTTGGA
TCCCGCAGAGATTTCGATAAACACATGGGTCGCCCCGACGCTGCGCCTCG
ACCTTCCCCCAGCCTTGGCCACCGAGGTGGTCGGCACGCTCAAACCTATC
TTAGAAGAATGGAGTGGGATTTCTGAGCTCGAGTCAACGGGAATCAGCGG
CATTCGGACGTATCTGCCAGGGGCCACCATCGCGGAGCACGTGGACATGG
CCACGACGAACGTTATCTCTGCACTCATTAATGTGGATCAAAATGTATCG
GGGCTTTGGCCTTTTGAGATGAAGGACCATGCGGGTAAGTTACATTCGTT
GCACATGAAGCCGGGCGAGGTGGTGATTTATGAGAGTGCGACCTGCGCAC
ATCAGCGTTCCCACCCTTTGCCGTCGGGGGGGCATTACACCAACCTTTTC
ATGCGCTTCAAGCCCAAAGGCTGGACGTTTTCTTATTGA

Synonyms

Publications