jgi.p|Nanoce1779_2|592405, mRNA_5397 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592405
Unique NamemRNA_5397
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1051
Alignment locationscaffold_13:337519..338853 -

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Properties
Property NameValue
TranscriptId592491
TrackFilteredModels2
ProteinId592405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:337519..338853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592405gene_5397Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592405mRNA_5397-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5397CDS_5397Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5397 ID=mRNA_5397|Name=jgi.p|Nanoce1779_2|592405|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp
GGAGAAAGTAATGAATGGAAGATGACAACCAAGTTGAAGGCGAGAAAAGT
CATTCTTTCTGTCTGTCTTCCCCTCGTGCATCCTGGTAACCAAATAATTT
GATCTTGCGCGGTTTGAAGATTCGAATGAAGAATGCTGATGCCGAGTGTA
AAAATATGCGACGATGAGACCTGCGCAGTCAAAACGCTATGGCCCACTGC
CTTTGCCGTCTCAGGTACCCAGTGTCATCCACAAGCTTTCACTCGTCTTC
TTCATGTGCCCTGTGTTCGGCGGTGGTGGTCGTCCACATCCATGATGGAA
ATGGGCCGCGCGGACGCGATGCCATAAAAGTGATGGAAAGCAAACCACCG
TCTGTCGCTCTGATCTCATCTCGGGCCCAGGTTCCCTGCGTGCATGTCCT
TATCTGCCCCGGCTCACCCATCTTGCTCCATTCTCGTCAATCTTAACCAC
GAGAACAGACAGAAACGAGTGCACGGAGAGCGCACGTCAAGAGATGATCC
GCTTCTTGCTTCTGCAGAATCGGCAGGGCAAGACGCGACTGTCAAAGTGG
TATGTGCCCCCGCCTACCGAGGCGGAGAAGTTCCGTCTTGAGGCAGAAGT
GCACAAGCTGATTGTGAGCCGGGACCGCAAGTACACCAACTTTGTGGAGC
ACCAGAACTACAAGCTCATTTACCGGCGTTATGCGGGCTTGTACTTTTCC
CTGGGTGTGGATGTGACGGACAACGAGCTTGCCTACCTCGAGTCCATCCA
CCTCTTCGTGGAGCTCCTTGACGAATTCTTCCGCAACGTCTGCGAACTCG
ACATCGTCTTCAATTTCAACAAGGTGTACTCTATTTTGGACGAGTTCATC
TTGGCGGGCGAGATTCAGGAGACAAGCAAGCGGGAAATTTTAGAACGGAT
CCGGGACATGCAGGCCTATGAGAAAGCCTCGGAGAAGTGAAAGTCGAATC
CGGAAAAATACAGCTAAACGTTGGGGGGAAAGGAGGAAAGCATGATGCAT
GCGTGTAACCGCCCCATTTTTGTAAAGAAGAATCAAAAAATGTCTGTAAA
G
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protein sequence of jgi.p|Nanoce1779_2|592405

>mRNA_5397-protein ID=mRNA_5397-protein|Name=jgi.p|Nanoce1779_2|592405|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MIRFLLLQNRQGKTRLSKWYVPPPTEAEKFRLEAEVHKLIVSRDRKYTNF
VEHQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEFFRNVC
ELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQAYEKASEK*
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mRNA from alignment at scaffold_13:337519..338853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5397 ID=mRNA_5397|Name=jgi.p|Nanoce1779_2|592405|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_13:337519..338853- (Nannochloropsis oceanica)
GGAGAAAGTAATGAATGGAAGATGACAACCAAGTTGAAGGCGAGAAAAGT
CATTCTTTCTGTCTGTCTTCCCCTCGTGCATCCTGGTAACCAAATAATTT
GATCTTGCGCGGTTTGAAGATTCGAATGAAGAATGCTGATGCCGAGTGTA
AAAATATGCGACGATGAGACCTGCGCAGTCAAAACGCTATGGCCCACTGC
CTTTGCCGTCTCAGGTACCCAGTGTCATCCACAAGCTTTCACTCGTCTTC
TTCATGTGCCCTGTGTTCGGCGGTGGTGGTCGTCCACATCCATGATGGAA
ATGGGCCGCGCGGACGCGATGCCATAAAAGTGATGGAAAGCAAACCACCG
TCTGTCGCTCTGATCTCATCTCGGGCCCAGGTTCCCTGCGTGCATGTCCT
TATCTGCCCCGGCTCACCCATCTTGCTCCATTCTCGTCAATCTTAACCAC
GAGAACAGACAGAAACGAGTGCACGGAGAGCGCACGTCAAGAGATGGTAA
GTGTTGACTGCTTGCCGTGCCCATCATCGCCAAGGACTTTCAAGACGCCG
GCTGCTTTCCATGTCTCACCACCTGTTCCACCCATGCTCATGATCATACC
ATCACACACGCCCTTAAACACTTTCCTTTAGATCCGCTTCTTGCTTCTGC
AGAATCGGCAGGGCAAGACGCGACTGTCAAAGTGGTATGTGCCCCCGCCT
ACCGAGGCGGAGAAGTTCCGTCTTGAGGCAGAAGTGCACAAGCTGATTGT
GAGCCGGGACCGCAAGTACACCAACTTTGTGGAGCACCAGAACTACAAGC
TCATTTACCGGCGTTATGCGGGCTTGTACTTTTCCCTGGGTGTGGATGTG
ACGGACAACGAGCTTGCCTACCTCGAGTCCATCCACCTCTTCGTGGAGCT
CCTTGACGAATTCTTCCGCAACGTCTGCGAACTCGACATCGTCTTCAATT
TCAACAAGGTCAGTAAGAGAAGGGGGGCAAGGTGACTGAGCAGGACGGTT
TACGACTCAGTTTGGTTGTATCGCCGACGTTCATCATTGCCTGCGTCCTT
CGTTTCCCAGCTCGCTCTCACGTACGTTCTTACTGACCCCTGCACTAACA
CTTACAGGTGTACTCTATTTTGGACGAGTTCATCTTGGCGGGCGAGATTC
AGGAGACAAGCAAGCGGGAAATTTTAGAACGGATCCGGGACATGCAGGCC
TATGAGAAAGCCTCGGAGAAGTGAAAGTCGAATCCGGAAAAATACAGCTA
AACGTTGGGGGGAAAGGAGGAAAGCATGATGCATGCGTGTAACCGCCCCA
TTTTTGTAAAGAAGAATCAAAAAATGTCTGTAAAG
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Coding sequence (CDS) from alignment at scaffold_13:337519..338853-

>mRNA_5397 ID=mRNA_5397|Name=jgi.p|Nanoce1779_2|592405|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_13:337519..338853- (Nannochloropsis oceanica)
GTGTACTCTATTTTGGACGAGTTCATCTTGGCGGGCGAGATTCAGGAGAC
AAGCAAGCGGGAAATTTTAGAACGGATCCGGGACATGCAGGCCTATGAGA
AAGCCTCGGAGAAGTGAATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGC
AAGACGCGACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAA
GTTCCGTCTTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCA
AGTACACCAACTTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGT
TATGCGGGCTTGTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCT
TGCCTACCTCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCT
TCCGCAACGTCTGCGAACTCGACATCGTCTTCAATTTCAACAAGATGGTG
TACTCTATTTTGGACGAGTTCATCTTGGCGGGCGAGATTCAGGAGACAAG
CAAGCGGGAAATTTTAGAACGGATCCGGGACATGCAGGCCTATGAGAAAG
CCTCGGAGAAGTGAATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGCAAG
ACGCGACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAAGTT
CCGTCTTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCAAGT
ACACCAACTTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGTTAT
GCGGGCTTGTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCTTGC
CTACCTCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCTTCC
GCAACGTCTGCGAACTCGACATCGTCTTCAATTTCAACAAGATGGTGTAC
TCTATTTTGGACGAGTTCATCTTGGCGGGCGAGATTCAGGAGACAAGCAA
GCGGGAAATTTTAGAACGGATCCGGGACATGCAGGCCTATGAGAAAGCCT
CGGAGAAGTGAATCCGCTTCTTGCTTCTGCAGAATCGGCAGGGCAAGACG
CGACTGTCAAAGTGGTATGTGCCCCCGCCTACCGAGGCGGAGAAGTTCCG
TCTTGAGGCAGAAGTGCACAAGCTGATTGTGAGCCGGGACCGCAAGTACA
CCAACTTTGTGGAGCACCAGAACTACAAGCTCATTTACCGGCGTTATGCG
GGCTTGTACTTTTCCCTGGGTGTGGATGTGACGGACAACGAGCTTGCCTA
CCTCGAGTCCATCCACCTCTTCGTGGAGCTCCTTGACGAATTCTTCCGCA
ACGTCTGCGAACTCGACATCGTCTTCAATTTCAACAAGATG
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Synonyms
Publications