jgi.p|Nanoce1779_2|592388, mRNA_5391 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592388
Unique NamemRNA_5391
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2094
Alignment locationscaffold_13:325254..327347 -

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Properties
Property NameValue
TranscriptId592474
TrackFilteredModels2
ProteinId592388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:325254..327347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592388gene_5391Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592388mRNA_5391-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5391CDS_5391Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5391 ID=mRNA_5391|Name=jgi.p|Nanoce1779_2|592388|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
TTCAGCCAGAACGGCATCCAGCTCCCGTGACAGCTCTTCTGCCATCTCTT
CCTCCTCCTCCTCTTCTTCCTCCACCTCCTCTTCCCCCCCTTCCTTCTTG
CTATCCTCATTCCCGTTGTTTACGCCCTCCTTTAGTTCCTCACCCGCCCC
CGATGTGGCGGTGGACTTATCGTCGCCCGCGTCAGTACTGTTCTCCTCCT
TCTTATTTGAGGACGGGGCCGAGGGTGCTGCGTCCTCGGTGTCACCCCCT
GCCTCGTCGTCTTCCCGCTTCGGTAAGGCCAAGGCGGTGTGGGCCTCATG
GTTGCCATTGACGCTGGCGCTACCATTGACACTCACGCTGGAGTTCGAGA
TGTCCTGTCGCCCGAGGCATGTAGATTCTATCCTCCCCTCCCCTTTCTTC
GCACCGTCCGCTTCCTGTTGAGCAGGGGCACCGACTTTCGCCTCGGTCTG
GACCTTGGGCGGGGGCTGGGACGAGAGCCCGAGGTTGGCCAACTTGGCAC
GGCGCTGCAGGCGGGCCTTAAGCAGTTTAACTGTCAACTTGTTGCGGCGA
GGGTTGTTACGGCCGCGCATACACTCGGCGATGTCCTTGTCCGTGAGTCC
CACGTGCGAGTAGACGAACATCACAAGGCTCAGGCGCGCCACCTCCTTCC
AGGTCAGCTTGTTCAGGGGCAGCACAAGCCCACTCTTGTCCGAGCACACC
TCTTCCATCATTTCTCCCGTACTGCCAGTTTTCAGTCCCAGCACGTACTC
CACATCAGGCGTTACGGCTCGCACCAGGGCCACGCACAAGTCCTCCAGCA
GCCGCAACGCCTCGGCTCTGGGCTCCTCCGCAGTCCCCAGCGCCCCACCA
GGCGCAGGCTTTGCCAGCACGCAGAGCGCCTCGGCCAGCTCCGGAAGTGT
GGGCACCGCCAGCAGCCCCAGGGGTCGTGCAAACGTGTATATAAAATTGC
AGCACGAGATAAGCTTGGCCCGCTGCAATGGCGGCAAGGAGGACAAGGCC
GATGGCGTAGAGGGAGCAGGCGGCAGGACCAAGGGTAGGTCAACCTCAAT
GGCAGGTGAAACCCTCGACACCCCTAAGTCTGCCACCATGGGCCGCGCCC
GTAGACCGGGTAATTCCTTCTTGAATTTGGCAAGGATCTTGGACTTGGCG
TCGCTTTTGCGCTTCTGGACTTCCAGACGAACCGCTTTGCGAATCTCTTT
CTCCACCTCGGGCGCCACCGAAATCTTCTTCTTCTTACGCCCTACTCCAG
ACTTCTTGGTGACCGCTATCCCCGAAACATCGCCACTTATTACGGAAGCT
TCTTCTGACGAGGAGGTCTTCTTGTTCAAAGGCGGCTTCTTGGATGCAGG
CGCCCCGGCAGCCGTCGTCATGCCTGTCTCCTCGGTAACTTCCCTCTTTT
TCTTGTACGCCTCGACAGCAGTGGGGGTCTCGGTTGCAACGGGACGCTTC
ATCTTTTTGCTGGTGTCCCCCCCGGTAGTCCCATACTCCTTGCCGGCAGA
TCCTTCCATCATCGGAGACGTCCTCTTCACGTCACTGCCCATGCCAATGC
TGGTGCGCGCTGGAGAGCTGACTGGCCTTTCCTCACCCATGGCAACATGT
TCCTTACCGGAATCCATCTCGTCGTCAAAAAGGTCTGATGCCATTACCAG
TGCCTGCGGCTTGGGCGTTCCCCCGATGCTGGTGGTACCGGAAGCCTTGG
CCTTTACCGCAGCCGCTGCCAAGGCCTCCTTCCCCCTCCTCCCTTCTTCT
TCGTCCGAGCTATCGATCATAGGGGTGCCCTGTGATTTTCCTGCCAGTCA
CAGGGGTGCGTAAGAGAAAATTATGGGTGTGGTTGTTGTGAACGATGTAG
TCAGCGTCAAAAAGGAGTGCCCGGCTTTCTTTTCTGTAAATGTTGTGTGG
TGGAGTGTGTGTCGTTCGTTTTCTGTGGCGATATGTGCTTGGATGCTGAA
GCGATGTGCACCGGTGTTATTTGCCTAATTCTCAGCCTGGCCACTTGTTT
CATGCACTTTGTCTCCCTGTGAAGGGCGTTGGTGTAATGGGTGTGGCTTG
ATAGTAACGATCAGATTGCATTTTGATGCCGAATGCGTGCGCAA
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protein sequence of jgi.p|Nanoce1779_2|592388

>mRNA_5391-protein ID=mRNA_5391-protein|Name=jgi.p|Nanoce1779_2|592388|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MAGETLDTPKSATMGRARRPGNSFLNLARILDLASLLRFWTSRRTALRIS
FSTSGATEIFFFLRPTPDFLVTAIPETSPLITEASSDEEVFLFKGGFLDA
GAPAAVVMPVSSVTSLFFLYASTAVGVSVATGRFIFLLVSPPVVPYSLPA
DPSIIGDVLFTSLPMPMLVRAGELTGLSSPMATCSLPESISSSKRSDAIT
SACGLGVPPMLVVPEALAFTAAAAKASFPLLPSSSSELSIIGVPCDFPAS
HRGA*
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mRNA from alignment at scaffold_13:325254..327347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5391 ID=mRNA_5391|Name=jgi.p|Nanoce1779_2|592388|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp|location=Sequence derived from alignment at scaffold_13:325254..327347- (Nannochloropsis oceanica)
TTCAGCCAGAACGGCATCCAGCTCCCGTGACAGCTCTTCTGCCATCTCTT
CCTCCTCCTCCTCTTCTTCCTCCACCTCCTCTTCCCCCCCTTCCTTCTTG
CTATCCTCATTCCCGTTGTTTACGCCCTCCTTTAGTTCCTCACCCGCCCC
CGATGTGGCGGTGGACTTATCGTCGCCCGCGTCAGTACTGTTCTCCTCCT
TCTTATTTGAGGACGGGGCCGAGGGTGCTGCGTCCTCGGTGTCACCCCCT
GCCTCGTCGTCTTCCCGCTTCGGTAAGGCCAAGGCGGTGTGGGCCTCATG
GTTGCCATTGACGCTGGCGCTACCATTGACACTCACGCTGGAGTTCGAGA
TGTCCTGTCGCCCGAGGCATGTAGATTCTATCCTCCCCTCCCCTTTCTTC
GCACCGTCCGCTTCCTGTTGAGCAGGGGCACCGACTTTCGCCTCGGTCTG
GACCTTGGGCGGGGGCTGGGACGAGAGCCCGAGGTTGGCCAACTTGGCAC
GGCGCTGCAGGCGGGCCTTAAGCAGTTTAACTGTCAACTTGTTGCGGCGA
GGGTTGTTACGGCCGCGCATACACTCGGCGATGTCCTTGTCCGTGAGTCC
CACGTGCGAGTAGACGAACATCACAAGGCTCAGGCGCGCCACCTCCTTCC
AGGTCAGCTTGTTCAGGGGCAGCACAAGCCCACTCTTGTCCGAGCACACC
TCTTCCATCATTTCTCCCGTACTGCCAGTTTTCAGTCCCAGCACGTACTC
CACATCAGGCGTTACGGCTCGCACCAGGGCCACGCACAAGTCCTCCAGCA
GCCGCAACGCCTCGGCTCTGGGCTCCTCCGCAGTCCCCAGCGCCCCACCA
GGCGCAGGCTTTGCCAGCACGCAGAGCGCCTCGGCCAGCTCCGGAAGTGT
GGGCACCGCCAGCAGCCCCAGGGGTCGTGCAAACGTGTATATAAAATTGC
AGCACGAGATAAGCTTGGCCCGCTGCAATGGCGGCAAGGAGGACAAGGCC
GATGGCGTAGAGGGAGCAGGCGGCAGGACCAAGGGTAGGTCAACCTCAAT
GGCAGGTGAAACCCTCGACACCCCTAAGTCTGCCACCATGGGCCGCGCCC
GTAGACCGGGTAATTCCTTCTTGAATTTGGCAAGGATCTTGGACTTGGCG
TCGCTTTTGCGCTTCTGGACTTCCAGACGAACCGCTTTGCGAATCTCTTT
CTCCACCTCGGGCGCCACCGAAATCTTCTTCTTCTTACGCCCTACTCCAG
ACTTCTTGGTGACCGCTATCCCCGAAACATCGCCACTTATTACGGAAGCT
TCTTCTGACGAGGAGGTCTTCTTGTTCAAAGGCGGCTTCTTGGATGCAGG
CGCCCCGGCAGCCGTCGTCATGCCTGTCTCCTCGGTAACTTCCCTCTTTT
TCTTGTACGCCTCGACAGCAGTGGGGGTCTCGGTTGCAACGGGACGCTTC
ATCTTTTTGCTGGTGTCCCCCCCGGTAGTCCCATACTCCTTGCCGGCAGA
TCCTTCCATCATCGGAGACGTCCTCTTCACGTCACTGCCCATGCCAATGC
TGGTGCGCGCTGGAGAGCTGACTGGCCTTTCCTCACCCATGGCAACATGT
TCCTTACCGGAATCCATCTCGTCGTCAAAAAGGTCTGATGCCATTACCAG
TGCCTGCGGCTTGGGCGTTCCCCCGATGCTGGTGGTACCGGAAGCCTTGG
CCTTTACCGCAGCCGCTGCCAAGGCCTCCTTCCCCCTCCTCCCTTCTTCT
TCGTCCGAGCTATCGATCATAGGGGTGCCCTGTGATTTTCCTGCCAGTCA
CAGGGGTGCGTAAGAGAAAATTATGGGTGTGGTTGTTGTGAACGATGTAG
TCAGCGTCAAAAAGGAGTGCCCGGCTTTCTTTTCTGTAAATGTTGTGTGG
TGGAGTGTGTGTCGTTCGTTTTCTGTGGCGATATGTGCTTGGATGCTGAA
GCGATGTGCACCGGTGTTATTTGCCTAATTCTCAGCCTGGCCACTTGTTT
CATGCACTTTGTCTCCCTGTGAAGGGCGTTGGTGTAATGGGTGTGGCTTG
ATAGTAACGATCAGATTGCATTTTGATGCCGAATGCGTGCGCAA
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Coding sequence (CDS) from alignment at scaffold_13:325254..327347-

>mRNA_5391 ID=mRNA_5391|Name=jgi.p|Nanoce1779_2|592388|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_13:325254..327347- (Nannochloropsis oceanica)
ATGGCAGGTGAAACCCTCGACACCCCTAAGTCTGCCACCATGGGCCGCGC
CCGTAGACCGGGTAATTCCTTCTTGAATTTGGCAAGGATCTTGGACTTGG
CGTCGCTTTTGCGCTTCTGGACTTCCAGACGAACCGCTTTGCGAATCTCT
TTCTCCACCTCGGGCGCCACCGAAATCTTCTTCTTCTTACGCCCTACTCC
AGACTTCTTGGTGACCGCTATCCCCGAAACATCGCCACTTATTACGGAAG
CTTCTTCTGACGAGGAGGTCTTCTTGTTCAAAGGCGGCTTCTTGGATGCA
GGCGCCCCGGCAGCCGTCGTCATGCCTGTCTCCTCGGTAACTTCCCTCTT
TTTCTTGTACGCCTCGACAGCAGTGGGGGTCTCGGTTGCAACGGGACGCT
TCATCTTTTTGCTGGTGTCCCCCCCGGTAGTCCCATACTCCTTGCCGGCA
GATCCTTCCATCATCGGAGACGTCCTCTTCACGTCACTGCCCATGCCAAT
GCTGGTGCGCGCTGGAGAGCTGACTGGCCTTTCCTCACCCATGGCAACAT
GTTCCTTACCGGAATCCATCTCGTCGTCAAAAAGGTCTGATGCCATTACC
AGTGCCTGCGGCTTGGGCGTTCCCCCGATGCTGGTGGTACCGGAAGCCTT
GGCCTTTACCGCAGCCGCTGCCAAGGCCTCCTTCCCCCTCCTCCCTTCTT
CTTCGTCCGAGCTATCGATCATAGGGGTGCCCTGTGATTTTCCTGCCAGT
CACAGGGGTGCGTAA
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Synonyms
Publications