jgi.p|Nanoce1779_2|592386, mRNA_5390 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592386
Unique NamemRNA_5390
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_13:323604..324972 -

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Properties
Property NameValue
TranscriptId592472
TrackFilteredModels2
ProteinId592386
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:323604..324972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592386gene_5390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592386mRNA_5390-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5390CDS_5390Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5390 ID=mRNA_5390|Name=jgi.p|Nanoce1779_2|592386|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
ACAGAAAGCATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGAT
TAACGGTACCTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCC
CCGTTTCTCCGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAG
ACGGGCTTGCTGGCAGAAGTTTTGCAATGGAAGAACGAGGACAAATGTTT
GGAGAATGACGAGGATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGC
TGTTGGTGAGTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGG
GCAGCGGCGGTAGCCAAGATCGATTTGAACGGCCGCAAGTACCCCGCTAC
TCTCGTGAAGGGTCAGGCGCACAAGTATGACCATTACAGTTCCCAAACAG
GCATCAAAAAGCAGGGCCAGAGTATTGGCGAGTCTCTTTCAATTTTCAAG
TCTCCTCCCTGGGAGTGTATCAGGATAAGCAGCCTCCAGGCCATCTTACG
AGAATTCGTGGCAGAGCGAGAATGGGGCAAGTACCACGCGCCTCGCAATC
TGTTGCTGGCCTTGGTAGGAGAGATGGGTGAACTTTGCGAGATTGTGAAG
ACCATGAATGGTCCACCGGCTTCATGGCCTCGGGCTGCCAAGGATGAGTT
GGCTCAAGAGGTGGCGGATGTTTTTATTTATCTACTGCGATTCGGGGACG
TGTGCAATATCGACTTTAGGGAAGGCTTGGTAGAAACCGTCGCTGCCGAG
GCCGCCCGACAAATTGCTTCGAGGAAGCAGGAAAAGGGAGACAGGGAGAC
GCATAGTGAGCAAAAGAAAGAGAGGTGGTGGTTCGCTTCTTCCACTTGGG
TAGTGAGTGGCATGCGATGGCGGATGAGGAGGTCGTGGAGGGAGGGAGAA
AAGGTTTCTGAGGTCGCCGTGGAGCTTGTGCTGTCGCTACTCGCTGCTGC
CACCGCCGCGTGTGTGGGCGCAGCTATATTGAAGAAGCGATAGTAGTTTA
TGATGCAGCACTGTAAAAAATAAAATAAAAAAAGAGAATCAAATG
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protein sequence of jgi.p|Nanoce1779_2|592386

>mRNA_5390-protein ID=mRNA_5390-protein|Name=jgi.p|Nanoce1779_2|592386|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGRSQPNNGDDIGINGTLELFRQSVSCSFPPVSPISIPLLCLDVAQKTGL
LAEVLQWKNEDKCLENDEDLRKKVQVTAGGLLVSVLRFSEECEIDLGAAA
VAKIDLNGRKYPATLVKGQAHKYDHYSSQTGIKKQGQSIGESLSIFKSPP
WECIRISSLQAILREFVAEREWGKYHAPRNLLLALVGEMGELCEIVKTMN
GPPASWPRAAKDELAQEVADVFIYLLRFGDVCNIDFREGLVETVAAEAAR
QIASRKQEKGDRETHSEQKKERWWFASSTWVVSGMRWRMRRSWREGEKVS
EVAVELVLSLLAAATAACVGAAILKKR*
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mRNA from alignment at scaffold_13:323604..324972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5390 ID=mRNA_5390|Name=jgi.p|Nanoce1779_2|592386|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_13:323604..324972- (Nannochloropsis oceanica)
ACAGAAAGCATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGAT
TAACGGTACCTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCC
CCGTTTCTCCGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAG
ACGGGCTTGCTGGCAGAAGTTTTGCAATGGAAGAACGAGGACAAATGTTT
GGAGAATGACGAGGATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGC
TGTTGGTGAGTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGG
GCAGCGGCGGTAGCCAAGATCGATTTGAACGGCCGCAAGTAAGTGTGAGG
AAAGATAAGGGTCACAGTGCAGAAGTTTCTGAGATGTATATGCGAGCACC
TTTGTCCGAGCAACTATGTCCGAAGATCGCCTGCACGTATGTCCGAAGAT
GGCCTGCACTTGCTTTCCCCTCCCAGTGAGCACAGGGTGTATGTTCTATT
TTTATCACTTTTAAGAGGAGGAATGTGGTGAAATGTGGCTTGGCACATTT
TTCTAATGATTCAACTATGGTGCCCTGATCCACATCATTTACGGAATTAT
CTTCTTTATTGCTCTCCTTTTCATCACACCGTCTTCTCCCCCGCCTCCTT
TTCTTTCTTCAGGTACCCCGCTACTCTCGTGAAGGGTCAGGCGCACAAGT
ATGACCATTACAGTTCCCAAACAGGCATCAAAAAGCAGGGCCAGAGTATT
GGCGAGTCTCTTTCAATTTTCAAGTCTCCTCCCTGGGAGTGTATCAGGAT
AAGCAGCCTCCAGGCCATCTTACGAGAATTCGTGGCAGAGCGAGAATGGG
GCAAGTACCACGCGCCTCGCAATCTGTTGCTGGCCTTGGTAGGAGAGATG
GGTGAACTTTGCGAGATTGTGAAGACCATGAATGGTCCACCGGCTTCATG
GCCTCGGGCTGCCAAGGATGAGTTGGCTCAAGAGGTGGCGGATGTTTTTA
TTTATCTACTGCGATTCGGGGACGTGTGCAATATCGACTTTAGGGAAGGC
TTGGTAGAAACCGTCGCTGCCGAGGCCGCCCGACAAATTGCTTCGAGGAA
GCAGGAAAAGGGAGACAGGGAGACGCATAGTGAGCAAAAGAAAGAGAGGT
GGTGGTTCGCTTCTTCCACTTGGGTAGTGAGTGGCATGCGATGGCGGATG
AGGAGGTCGTGGAGGGAGGGAGAAAAGGTTTCTGAGGTCGCCGTGGAGCT
TGTGCTGTCGCTACTCGCTGCTGCCACCGCCGCGTGTGTGGGCGCAGCTA
TATTGAAGAAGCGATAGTAGTTTATGATGCAGCACTGTAAAAAATAAAAT
AAAAAAAGAGAATCAAATG
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Coding sequence (CDS) from alignment at scaffold_13:323604..324972-

>mRNA_5390 ID=mRNA_5390|Name=jgi.p|Nanoce1779_2|592386|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_13:323604..324972- (Nannochloropsis oceanica)
GTACCCCGCTACTCTCGTGAAGGGTCAGGCGCACAAGTATGACCATTACA
GTTCCCAAACAGGCATCAAAAAGCAGGGCCAGAGTATTGGCGAGTCTCTT
TCAATTTTCAAGTCTCCTCCCTGGGAGTGTATCAGGATAAGCAGCCTCCA
GGCCATCTTACGAGAATTCGTGGCAGAGCGAGAATGGGGCAAGTACCACG
CGCCTCGCAATCTGTTGCTGGCCTTGGTAGGAGAGATGGGTGAACTTTGC
GAGATTGTGAAGACCATGAATGGTCCACCGGCTTCATGGCCTCGGGCTGC
CAAGGATGAGTTGGCTCAAGAGGTGGCGGATGTTTTTATTTATCTACTGC
GATTCGGGGACGTGTGCAATATCGACTTTAGGGAAGGCTTGGTAGAAACC
GTCGCTGCCGAGGCCGCCCGACAAATTGCTTCGAGGAAGCAGGAAAAGGG
AGACAGGGAGACGCATAGTGAGCAAAAGAAAGAGAGGTGGTGGTTCGCTT
CTTCCACTTGGGTAGTGAGTGGCATGCGATGGCGGATGAGGAGGTCGTGG
AGGGAGGGAGAAAAGGTTTCTGAGGTCGCCGTGGAGCTTGTGCTGTCGCT
ACTCGCTGCTGCCACCGCCGCGTGTGTGGGCGCAGCTATATTGAAGAAGC
GATAGATGGGACGATCACAGCCCAACAATGGTGACGACATTGGGATTAAC
GGTACCTTGGAGCTATTCCGTCAGTCCGTCTCTTGTAGCTTTCCCCCCGT
TTCTCCGATTTCTATCCCACTCCTGTGCCTTGACGTAGCCCAAAAGACGG
GCTTGCTGGCAGAAGTTTTGCAATGGAAGAACGAGGACAAATGTTTGGAG
AATGACGAGGATCTACGGAAGAAGGTGCAGGTGACCGCGGGGGGGCTGTT
GGTGAGTGTTCTAAGATTCTCGGAGGAATGCGAGATCGACCTCGGGGCAG
CGGCGGTAGCCAAGATCGATTTGAACGGCCGCAAGTACCCCGCTACTCTC
GTGAAGGGTCAGGCGCACAAGTATGACCATTACAGTTCCCAAACAGGCAT
CAAAAAGCAGGGCCAGAGTATTGGCGAGTCTCTTTCAATTTTCAAGTCTC
CTCCCTGGGAGTGTATCAGGATAAGCAGCCTCCAGGCCATCTTACGAGAA
TTCGTGGCAGAGCGAGAATGGGGCAAGTACCACGCGCCTCGCAATCTGTT
GCTGGCCTTGGTAGGAGAGATGGGTGAACTTTGCGAGATTGTGAAGACCA
TGAATGGTCCACCGGCTTCATGGCCTCGGGCTGCCAAGGATGAGTTGGCT
CAAGAGGTGGCGGATGTTTTTATTTATCTACTGCGATTCGGGGACGTGTG
CAATATCGACTTTAGGGAAGGCTTGGTAGAAACCGTCGCTGCCGAGGCCG
CCCGACAAATTGCTTCGAGGAAGCAGGAAAAGGGAGACAGGGAGACGCAT
AGTGAGCAAAAGAAAGAGAGGTGGTGGTTCGCTTCTTCCACTTGGGTAGT
GAGTGGCATGCGATGGCGGATGAGGAGGTCGTGGAGGGAGGGAGAAAAGG
TTTCTGAGGTCGCCGTGGAGCTTGTGCTGTCGCTACTCGCTGCTGCCACC
GCCGCGTGTGTGGGCGCAGCTATATTGAAGAAGCGATAGATGGGACGATC
ACAGCCCAACAATGGTGACGACATTGGGATTAACGGTACCTTGGAGCTAT
TCCGTCAGTCCGTCTCTTGTAGCTTTCCCCCCGTTTCTCCGATTTCTATC
CCACTCCTGTGCCTTGACGTAGCCCAAAAGACGGGCTTGCTGGCAGAAGT
TTTGCAATGGAAGAACGAGGACAAATGTTTGGAGAATGACGAGGATCTAC
GGAAGAAGGTGCAGGTGACCGCGGGGGGGCTGTTGGTGAGTGTTCTAAGA
TTCTCGGAGGAATGCGAGATCGACCTCGGGGCAGCGGCGGTAGCCAAGAT
CGATTTGAACGGCCGCAA
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Synonyms
Publications