jgi.p|Nanoce1779_2|592384, mRNA_5389 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592384
Unique Name	mRNA_5389
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1896
Alignment location	scaffold_13:321430..323579 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592470
Track	FilteredModels2
ProteinId	592384

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:321430..323579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592384	gene_5389	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592384	mRNA_5389-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5389	CDS_5389	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:321430..323579+
coding sequence from alignment at scaffold_13:321430..323579+

mRNA sequence

>mRNA_5389 ID=mRNA_5389|Name=jgi.p|Nanoce1779_2|592384|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
ACAGGTGCCGCAGCCTTAAGGCGCATTCCGACGCTGGCACATTTATAGTC
TGGCGCGGACCGCACAAGAAGACAGGTCATGCCGTCTATCCATCATCAGC
CGTCACCCTATGCCGAGCCCAACACACCGATTGCCTCGGCCAAGCGGCCA
CGTACAGTCGTAAGACACACGCACGGCACACCCCACCCAGGGGCTGCTGG
TGATGGGAGCGGCGGGAGATGCCAGACAGGCCTCTTGCATTCCCCGCTCC
CTGCCTGCCAGCTTGAGCAAACCAGCCCCGACAACAAGCATTACGAGGAT
CGCGGAGCAGTGTCGGAGTTGCACCGCGAGCGTTCAAAGACAGGGAGCAG
TACAGGTGATGGATGCGATGGCGAAGGCACGTGGAAGGGGCGGGTGGTGT
CCCTCTTCTCGCCCATGCTCAAGTTTGTGGGCGGCGCGCAGGACGGCCGG
GAGGCAAAGGAGGAAGAGTACGGGCTGCACGAGGAATTCAACGTGGCTGA
AAGACAGGGAGTGACGGCCGTACATGACCAAGAGAATGATTTAAATTGGG
AAAACCGAAACGGGCAGCCGCCACCAGTCGCTTTGAAGGTTGGTAGGGGA
GAGGAGGCAGCCCTGGCAGGGATCGAGGCGGCGGTGTGTCAGCAACAGGG
AGAGGATCATCAGGACGACCTCATGGATGTAGAGTCGAGGCTGGAGGACG
GCGATAGCAGCGAGGTTGAGGTTGGGGAGGAGGGGGAGGAGGACGGGGAG
GAGGATAATGACGTGGCGGAGGAGTTCAACCCTTTCCTGTTCATCAAGCA
GCTCCCACCCTACGAGCACGTGGCCATACGGGGTAAGGTGTGCTTACCGC
AGCGCAAGAACACGCGGTCGGCGCCAGCTTCAATTCCCGTGACGCTGGTG
CTGGACCTGGATGAGACACTGGTGCACTGTACGGTGGATCCTGTGCCCGA
CCCGGACGTGGTCTTTCCCGTGGACTTTAATGGTGTTAGCTACCAAGTGC
ACGTGCGCAAGCGGCCGCACCTGGAAGAGTTTCTGCGCCGCGTGTCCAAG
ATGTTCGAGGTGGTGGTCTTTACCGCCTCGCAGCAGGTGTATGCGGATGC
ACTGCTGGACCTGATTGACCCGGGCCAGAAGTTGATCAAGCACCGTCTAT
TTCGCGACGCCTGCCTGCCCGTGGAGGGCAATTACATCAAGGACCTGCAC
GTGCTGGGCCGCGACATGGCGCGCACGGTGCTCATCGACAACAGCCCCTA
CGCCTATGGCTATCAACTTGATAACGGCATCCCTATCGAGAGCTGGTTCG
AGGACCGCGACGATGCGGAGCTGCTCAAGCTTCTACCCTTCCTTGAGCAA
CTTAATAAAGTCGACGACGTGCGTCCGCTAATCCGCACAGCGTTCCAGTC
CCATCTTCGCGTGCAGGAGTCATAGGCTGGCTCGTGTGAGAATTATGGTC
GAAAGAGGGAGAGTGAGGGCCAAGATTGTCGTAGAAGACGAGCAAAATGG
ATTGTGTGACAGCCTTAGTACTTCTTGTGCTGTAGGTAGCCTCCCCGACT
TAAAATTGTGTGAATGTGTATTTATCAAGCAGGAGCGAGAGGAGTATAAG
CAGTAGAAAGAGGATGTAAAATTCCACACGGACACACCTGAAATCAAATG
TGTCGTGTCTATATCTGTCTGCCTGTGAGTGTGTGGGACTGTCTACGTTT
CTGTGCGAGTGTGCTTGCTTACCCTGACAGCTTAGCTTGTCAGTAAGACC
AGAGCCCCATGGAAACTGGCAGCAGAAAACGCAGCAGAAGCATCAGCGAA
TTGTTGAGGGGAAAAAAAGAACCTTTTAAATAGCTGTTTGGGATGATCGG
AAAGGATATAAACACAAAAAAATATAGATTTGATAGATGGCACCAA

protein sequence of jgi.p|Nanoce1779_2|592384

>mRNA_5389-protein ID=mRNA_5389-protein|Name=jgi.p|Nanoce1779_2|592384|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MPSIHHQPSPYAEPNTPIASAKRPRTVVRHTHGTPHPGAAGDGSGGRCQT
GLLHSPLPACQLEQTSPDNKHYEDRGAVSELHRERSKTGSSTGDGCDGEG
TWKGRVVSLFSPMLKFVGGAQDGREAKEEEYGLHEEFNVAERQGVTAVHD
QENDLNWENRNGQPPPVALKVGRGEEAALAGIEAAVCQQQGEDHQDDLMD
VESRLEDGDSSEVEVGEEGEEDGEEDNDVAEEFNPFLFIKQLPPYEHVAI
RGKVCLPQRKNTRSAPASIPVTLVLDLDETLVHCTVDPVPDPDVVFPVDF
NGVSYQVHVRKRPHLEEFLRRVSKMFEVVVFTASQQVYADALLDLIDPGQ
KLIKHRLFRDACLPVEGNYIKDLHVLGRDMARTVLIDNSPYAYGYQLDNG
IPIESWFEDRDDAELLKLLPFLEQLNKVDDVRPLIRTAFQSHLRVQES*

mRNA from alignment at scaffold_13:321430..323579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5389 ID=mRNA_5389|Name=jgi.p|Nanoce1779_2|592384|organism=Nannochloropsis oceanica|type=mRNA|length=2150bp|location=Sequence derived from alignment at scaffold_13:321430..323579+ (Nannochloropsis oceanica)
ACAGGTGCCGCAGCCTTAAGGCGCATTCCGACGCTGGCACATTTATAGTC
TGGCGCGGACCGCACAAGAAGACAGGTAAGGCATGGGATAGCCTACTGAA
TGGACGTGGTCAACAGATAAGGTATCAAAGCTGGTCGTTGTGCCTTGCTG
GCTATGATGTTCTCTGATAAGCAATCCCGCCATCAAACTTGCTAATGCAC
AAATAGACAGAGAGAGAGACACAGATAGATCCCTCTAGTTGCGTAGCACT
GTCACGTTTCTGCGTTCCCCTTGCTTACGGGGAGGAACATCCACCTAAAA
CTCGACACATCCCAATACTCTCCCCGCAGGTCATGCCGTCTATCCATCAT
CAGCCGTCACCCTATGCCGAGCCCAACACACCGATTGCCTCGGCCAAGCG
GCCACGTACAGTCGTAAGACACACGCACGGCACACCCCACCCAGGGGCTG
CTGGTGATGGGAGCGGCGGGAGATGCCAGACAGGCCTCTTGCATTCCCCG
CTCCCTGCCTGCCAGCTTGAGCAAACCAGCCCCGACAACAAGCATTACGA
GGATCGCGGAGCAGTGTCGGAGTTGCACCGCGAGCGTTCAAAGACAGGGA
GCAGTACAGGTGATGGATGCGATGGCGAAGGCACGTGGAAGGGGCGGGTG
GTGTCCCTCTTCTCGCCCATGCTCAAGTTTGTGGGCGGCGCGCAGGACGG
CCGGGAGGCAAAGGAGGAAGAGTACGGGCTGCACGAGGAATTCAACGTGG
CTGAAAGACAGGGAGTGACGGCCGTACATGACCAAGAGAATGATTTAAAT
TGGGAAAACCGAAACGGGCAGCCGCCACCAGTCGCTTTGAAGGTTGGTAG
GGGAGAGGAGGCAGCCCTGGCAGGGATCGAGGCGGCGGTGTGTCAGCAAC
AGGGAGAGGATCATCAGGACGACCTCATGGATGTAGAGTCGAGGCTGGAG
GACGGCGATAGCAGCGAGGTTGAGGTTGGGGAGGAGGGGGAGGAGGACGG
GGAGGAGGATAATGACGTGGCGGAGGAGTTCAACCCTTTCCTGTTCATCA
AGCAGCTCCCACCCTACGAGCACGTGGCCATACGGGGTAAGGTGTGCTTA
CCGCAGCGCAAGAACACGCGGTCGGCGCCAGCTTCAATTCCCGTGACGCT
GGTGCTGGACCTGGATGAGACACTGGTGCACTGTACGGTGGATCCTGTGC
CCGACCCGGACGTGGTCTTTCCCGTGGACTTTAATGGTGTTAGCTACCAA
GTGCACGTGCGCAAGCGGCCGCACCTGGAAGAGTTTCTGCGCCGCGTGTC
CAAGATGTTCGAGGTGGTGGTCTTTACCGCCTCGCAGCAGGTGTATGCGG
ATGCACTGCTGGACCTGATTGACCCGGGCCAGAAGTTGATCAAGCACCGT
CTATTTCGCGACGCCTGCCTGCCCGTGGAGGGCAATTACATCAAGGACCT
GCACGTGCTGGGCCGCGACATGGCGCGCACGGTGCTCATCGACAACAGCC
CCTACGCCTATGGCTATCAACTTGATAACGGCATCCCTATCGAGAGCTGG
TTCGAGGACCGCGACGATGCGGAGCTGCTCAAGCTTCTACCCTTCCTTGA
GCAACTTAATAAAGTCGACGACGTGCGTCCGCTAATCCGCACAGCGTTCC
AGTCCCATCTTCGCGTGCAGGAGTCATAGGCTGGCTCGTGTGAGAATTAT
GGTCGAAAGAGGGAGAGTGAGGGCCAAGATTGTCGTAGAAGACGAGCAAA
ATGGATTGTGTGACAGCCTTAGTACTTCTTGTGCTGTAGGTAGCCTCCCC
GACTTAAAATTGTGTGAATGTGTATTTATCAAGCAGGAGCGAGAGGAGTA
TAAGCAGTAGAAAGAGGATGTAAAATTCCACACGGACACACCTGAAATCA
AATGTGTCGTGTCTATATCTGTCTGCCTGTGAGTGTGTGGGACTGTCTAC
GTTTCTGTGCGAGTGTGCTTGCTTACCCTGACAGCTTAGCTTGTCAGTAA
GACCAGAGCCCCATGGAAACTGGCAGCAGAAAACGCAGCAGAAGCATCAG
CGAATTGTTGAGGGGAAAAAAAGAACCTTTTAAATAGCTGTTTGGGATGA
TCGGAAAGGATATAAACACAAAAAAATATAGATTTGATAGATGGCACCAA

Coding sequence (CDS) from alignment at scaffold_13:321430..323579+

>mRNA_5389 ID=mRNA_5389|Name=jgi.p|Nanoce1779_2|592384|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_13:321430..323579+ (Nannochloropsis oceanica)
ATGCCGTCTATCCATCATCAGCCGTCACCCTATGCCGAGCCCAACACACC
GATTGCCTCGGCCAAGCGGCCACGTACAGTCGTAAGACACACGCACGGCA
CACCCCACCCAGGGGCTGCTGGTGATGGGAGCGGCGGGAGATGCCAGACA
GGCCTCTTGCATTCCCCGCTCCCTGCCTGCCAGCTTGAGCAAACCAGCCC
CGACAACAAGCATTACGAGGATCGCGGAGCAGTGTCGGAGTTGCACCGCG
AGCGTTCAAAGACAGGGAGCAGTACAGGTGATGGATGCGATGGCGAAGGC
ACGTGGAAGGGGCGGGTGGTGTCCCTCTTCTCGCCCATGCTCAAGTTTGT
GGGCGGCGCGCAGGACGGCCGGGAGGCAAAGGAGGAAGAGTACGGGCTGC
ACGAGGAATTCAACGTGGCTGAAAGACAGGGAGTGACGGCCGTACATGAC
CAAGAGAATGATTTAAATTGGGAAAACCGAAACGGGCAGCCGCCACCAGT
CGCTTTGAAGGTTGGTAGGGGAGAGGAGGCAGCCCTGGCAGGGATCGAGG
CGGCGGTGTGTCAGCAACAGGGAGAGGATCATCAGGACGACCTCATGGAT
GTAGAGTCGAGGCTGGAGGACGGCGATAGCAGCGAGGTTGAGGTTGGGGA
GGAGGGGGAGGAGGACGGGGAGGAGGATAATGACGTGGCGGAGGAGTTCA
ACCCTTTCCTGTTCATCAAGCAGCTCCCACCCTACGAGCACGTGGCCATA
CGGGGTAAGGTGTGCTTACCGCAGCGCAAGAACACGCGGTCGGCGCCAGC
TTCAATTCCCGTGACGCTGGTGCTGGACCTGGATGAGACACTGGTGCACT
GTACGGTGGATCCTGTGCCCGACCCGGACGTGGTCTTTCCCGTGGACTTT
AATGGTGTTAGCTACCAAGTGCACGTGCGCAAGCGGCCGCACCTGGAAGA
GTTTCTGCGCCGCGTGTCCAAGATGTTCGAGGTGGTGGTCTTTACCGCCT
CGCAGCAGGTGTATGCGGATGCACTGCTGGACCTGATTGACCCGGGCCAG
AAGTTGATCAAGCACCGTCTATTTCGCGACGCCTGCCTGCCCGTGGAGGG
CAATTACATCAAGGACCTGCACGTGCTGGGCCGCGACATGGCGCGCACGG
TGCTCATCGACAACAGCCCCTACGCCTATGGCTATCAACTTGATAACGGC
ATCCCTATCGAGAGCTGGTTCGAGGACCGCGACGATGCGGAGCTGCTCAA
GCTTCTACCCTTCCTTGAGCAACTTAATAAAGTCGACGACGTGCGTCCGC
TAATCCGCACAGCGTTCCAGTCCCATCTTCGCGTGCAGGAGTCATAG

Synonyms

Publications