jgi.p|Nanoce1779_2|65017, mRNA_5386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|65017
Unique NamemRNA_5386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length948
Alignment locationscaffold_13:314131..315078 -

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Properties
Property NameValue
TranscriptId65103
TrackFilteredModels2
ProteinId65017
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:314131..315078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|65017gene_5386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|65017mRNA_5386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5386CDS_5386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5386 ID=mRNA_5386|Name=jgi.p|Nanoce1779_2|65017|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ACTTCCTCCTCACCGTGGTGGGGATCTCACACATGTTGTTTCTTTCTTTT
CCCTCGATGGCTCCACCCCCTGGTTTGGCTGATGGTGATGAGGATTCTGC
TGCAACTCTTCTTCTCTCTTTTCTGCTGCTTTATGGTCTTGTCGCAGTGC
CCCCCCTTGTTATCGTTCTTGCTGTACGAGGGTTATGATGTTTCTTTCCC
CCTACTTCTCGCCGCTTTTCTTCTATATTTATGCACATCTCCTCACATGT
ATGGCTTACTGCCAATAAAGAGACAGCATTGGACTGGCTAGCAGCTGGCA
AGTCGGGAAAGCGAGAAAGAGATGGACAGGACGGCTGGTTCAGCTTTGCT
GCTACCATCATCTCTTCCTCTCTGCTCACACATCTACATAATCGACGCCC
AATCTCTAAGTTTGCCTTTAATCGCTTTTTGTCAATGAATTTCTTGTCTT
ACCTAATTACCATCCCTCCCTACATCGTCTCTTCCCTTATTCGCATGTTC
TTTGAGTTTGTTCCTTGTTTGTTTCACACGCATGTTCACATCGGCATGCC
CTCGTTCTCCTTTCCGCTCCAGATTCGTCTCCATCCCCGTATCCCTCTCT
ATTTTACCAAAACACCATTCTCATCGTCTCTCCCCCTTCCCACTGTTTTA
GGACATTCTGTTACATTATACCATACAGGGAAGATGCGGACAAACGCACA
CATGGGCGCGCGTGGCCCTCACGCACTCTCATCTACATCACATGCCTTGG
AAACTAAAATTTCTCAGCGCCACCATGATAATCACTGGCGGTGTCTGTCT
TTTGAAAATCAAGCCAGAAATCTAGCTCTCGCGCCATCTGTTGTTTGTTC
TATCGCTTATTGACACCATTATACCCATCGCCATGTGAACTTGTCCTTCA
CTCTCTTCCAACCTGAGTGTTTTCCATATCATCCCTCCCTCCAGTTGA
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protein sequence of jgi.p|Nanoce1779_2|65017

>mRNA_5386-protein ID=mRNA_5386-protein|Name=jgi.p|Nanoce1779_2|65017|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MHISSHVWLTANKETALDWLAAGKSGKRERDGQDGWFSFAATIISSSLLT
HLHNRRPISKFAFNRFLSMNFLSYLITIPPYIVSSLIRMFFEFVPCLFHT
HVHIGMPSFSFPLQIRLHPRIPLYFTKTPFSSSLPLPTVLGHSVTLYHTG
KMRTNAHMGARGPHALSSTSHALETKISQRHHDNHWRCLSFENQARNLAL
APSVVCSIAY*
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mRNA from alignment at scaffold_13:314131..315078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5386 ID=mRNA_5386|Name=jgi.p|Nanoce1779_2|65017|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at scaffold_13:314131..315078- (Nannochloropsis oceanica)
ACTTCCTCCTCACCGTGGTGGGGATCTCACACATGTTGTTTCTTTCTTTT
CCCTCGATGGCTCCACCCCCTGGTTTGGCTGATGGTGATGAGGATTCTGC
TGCAACTCTTCTTCTCTCTTTTCTGCTGCTTTATGGTCTTGTCGCAGTGC
CCCCCCTTGTTATCGTTCTTGCTGTACGAGGGTTATGATGTTTCTTTCCC
CCTACTTCTCGCCGCTTTTCTTCTATATTTATGCACATCTCCTCACATGT
ATGGCTTACTGCCAATAAAGAGACAGCATTGGACTGGCTAGCAGCTGGCA
AGTCGGGAAAGCGAGAAAGAGATGGACAGGACGGCTGGTTCAGCTTTGCT
GCTACCATCATCTCTTCCTCTCTGCTCACACATCTACATAATCGACGCCC
AATCTCTAAGTTTGCCTTTAATCGCTTTTTGTCAATGAATTTCTTGTCTT
ACCTAATTACCATCCCTCCCTACATCGTCTCTTCCCTTATTCGCATGTTC
TTTGAGTTTGTTCCTTGTTTGTTTCACACGCATGTTCACATCGGCATGCC
CTCGTTCTCCTTTCCGCTCCAGATTCGTCTCCATCCCCGTATCCCTCTCT
ATTTTACCAAAACACCATTCTCATCGTCTCTCCCCCTTCCCACTGTTTTA
GGACATTCTGTTACATTATACCATACAGGGAAGATGCGGACAAACGCACA
CATGGGCGCGCGTGGCCCTCACGCACTCTCATCTACATCACATGCCTTGG
AAACTAAAATTTCTCAGCGCCACCATGATAATCACTGGCGGTGTCTGTCT
TTTGAAAATCAAGCCAGAAATCTAGCTCTCGCGCCATCTGTTGTTTGTTC
TATCGCTTATTGACACCATTATACCCATCGCCATGTGAACTTGTCCTTCA
CTCTCTTCCAACCTGAGTGTTTTCCATATCATCCCTCCCTCCAGTTGA
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Coding sequence (CDS) from alignment at scaffold_13:314131..315078-

>mRNA_5386 ID=mRNA_5386|Name=jgi.p|Nanoce1779_2|65017|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_13:314131..315078- (Nannochloropsis oceanica)
ATGCACATCTCCTCACATGTATGGCTTACTGCCAATAAAGAGACAGCATT
GGACTGGCTAGCAGCTGGCAAGTCGGGAAAGCGAGAAAGAGATGGACAGG
ACGGCTGGTTCAGCTTTGCTGCTACCATCATCTCTTCCTCTCTGCTCACA
CATCTACATAATCGACGCCCAATCTCTAAGTTTGCCTTTAATCGCTTTTT
GTCAATGAATTTCTTGTCTTACCTAATTACCATCCCTCCCTACATCGTCT
CTTCCCTTATTCGCATGTTCTTTGAGTTTGTTCCTTGTTTGTTTCACACG
CATGTTCACATCGGCATGCCCTCGTTCTCCTTTCCGCTCCAGATTCGTCT
CCATCCCCGTATCCCTCTCTATTTTACCAAAACACCATTCTCATCGTCTC
TCCCCCTTCCCACTGTTTTAGGACATTCTGTTACATTATACCATACAGGG
AAGATGCGGACAAACGCACACATGGGCGCGCGTGGCCCTCACGCACTCTC
ATCTACATCACATGCCTTGGAAACTAAAATTTCTCAGCGCCACCATGATA
ATCACTGGCGGTGTCTGTCTTTTGAAAATCAAGCCAGAAATCTAGCTCTC
GCGCCATCTGTTGTTTGTTCTATCGCTTATTGA
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Synonyms
Publications