jgi.p|Nanoce1779_2|592361, mRNA_5383 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592361
Unique NamemRNA_5383
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_13:305273..307164 -

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Properties
Property NameValue
TranscriptId592447
TrackFilteredModels2
ProteinId592361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:305273..307164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592361gene_5383Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592361mRNA_5383-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5383CDS_5383Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5383 ID=mRNA_5383|Name=jgi.p|Nanoce1779_2|592361|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
ACAGGCGTGAGCTGGGAGCCACTTGCCATTCAGACAAGCAGGCGGGGGAG
TAAGAAGGCGAGCCCTGCAGCAGCTAACTCGGACCAAGACACGTCACCAT
TGTCATGTCTGCGACGTTGCCTCGGCGCATTGTCAAGGAGACACAGAGAC
TCATATCCGAACCAGTTCCTGGAATTCATGCCACGCCCTACGAAGACAAT
TTCCGGTATTTCAGCGTTGTGATAGAAGGGCCCGAATCCTCTCCTTACCA
ACAGGGCACCTTCAAGCTGGAACTCTTCCTCCCCGCCGACTACCCCATGG
CCCCTCCCAAGGTCCGCTTTCTGACCAAGATGTACCACCCCAACATCGAC
AAGCTCGGCCGCATCTGTCTGGATATTCTTAAGGACAAGTGGTCCCCTGC
TCTGCAGATTCGCACCGTCCTCCTCTCCATTCAAGCCCTCCTGTCCTGCC
CCAACCCTGAGGATCCTCTGAACAACCAAGTTGCAGAGCTCTGGAAGGCC
GATGAAGACCGCGCCATCGCCAACGCCAAGGAATGGACACGCCTCTACGC
CACAAAGTCATGAAGAGGACGACAGTAGCAAGGGTAGATGTAATAAATAG
CAACCGCGGCACTCGATACGGGGGTAGTCGATGGATAGTATGGCGTAACA
TACGCACTTACATACGCCCATGCCAATGTGAAGTAGGCGCCAGGAGGGGA
AAAAAGAATTAGGGGAAGGAGAAAGAAAAGCCAGAAGAAAAGGGGACGTG
TTTATGAAGGAGAGGGTGGAGAAAGGAAGGAGTAGGAGGACGTCGAGAAA
AATGAAATGCTGAAGTGAGCAGCAGAAAAAAAGAAGAGACGAACTACAAC
AAGAACAACAACTAGAAAAACATAGAATTTGAAGAAAGGGATGCAAGCGT
GGAATTATAACAAGGGCGGAAGCGGGATATCATACGTTGGGATGTTTCCG
TGGACGATTTGACAGTGATAGAGCGAGAAGGAAGGAATAGATGGATGATG
CGCCCCGTCCCCTTTGAGTATGCATTCCCCAGGCACAACGCCAAAAGCAT
CAACACGACAAGACCAATACAATTAGGCAGGGAGTTGATGGGAATATTAC
TCTTCCTGGTATCAAGTGCATCCTCTCAATTGTTAATTAAAATTTTGTTT
GGCTATGATATCGAATATTTCATAATTTTCAATTTTCATTTCGCGTGTTA
TTCTTACATCCTCCATACCGGGAAGCATTTCCTCGCCGACCTATTGACAC
AATCTTCAAGGTGACGCACAAGCAAGACTTTCCTGCAGCACCGTACTACC
TTTCACAATTCCATCTTCCCATTCCCCTCTTCTTCTCCTTCCTCTGCCC
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protein sequence of jgi.p|Nanoce1779_2|592361

>mRNA_5383-protein ID=mRNA_5383-protein|Name=jgi.p|Nanoce1779_2|592361|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSATLPRRIVKETQRLISEPVPGIHATPYEDNFRYFSVVIEGPESSPYQQ
GTFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPAL
QIRTVLLSIQALLSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYAT
KS*
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mRNA from alignment at scaffold_13:305273..307164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5383 ID=mRNA_5383|Name=jgi.p|Nanoce1779_2|592361|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp|location=Sequence derived from alignment at scaffold_13:305273..307164- (Nannochloropsis oceanica)
ACAGGCGTGAGCTGGGAGCCACTTGCCATTCAGACAAGCAGGCGGGGGAG
TAAGAAGGCGAGCCCTGCAGCAGCTAACTCGGACCAAGACACGTCACCAT
TGTCATGTCTGCGACGTTGCCTCGGCGCATTGTCAAGGTGAGGATGAACG
GGGGGTTGAGGGGAGGCAGGCGCTTCCGGAGGGGCGTCACAGGCTAACGC
TATTCGTCTATACATACACACACACGCGCCACGCGCACATACCGCTCACA
ACCCGGCTATCACTCGCCTCAGGAGACACAGAGACTCATATCCGAACCAG
GTAATTTTGCCTGTGTTTGATGGACGTGTGTGCGTGCATATTGCTTTTTA
TCCCATCCCTCACCAAGACTCACCTCTACCCCACTTCCCCTCTGTTCCAC
CCTCCGCAATGCGCAGTTCCTGGAATTCATGCCACGCCCTACGAAGACAA
TTTCCGGTATTTCAGCGTTGTGATAGAAGGGCCCGAATCCTCTCCTTACC
AACGTAAGTGCACTTGCATGTGTGTGTTTGTGTTTTGAAACGACGCGAGT
CCAAGAGTGTTTGCTGCGTCTCAGGCATTTAGTGAACACCTCAGCCTCAG
GTTTGAACGAGGCAGAGGAAGGCAACCATATTATTTCTTATTTTTCCTAC
ATCCTTCGCCCTCTAATTTCAGAGGGCACCTTCAAGCTGGAACTCTTCCT
CCCCGCCGACTACCCCATGGCCCCTCCCAAGGTCCGCTTTCTGACCAAGA
TGTACCACCCCAACATCGACAAGCTCGGCCGCATCTGTCTGGATATTCTT
AAGGACAAGTGGTCCCCTGCTCTGCAGATTCGCACCGTCCTCCTCTCCAT
TCAAGCCCTCCTGGTGAGTGAGCAATGGCGGAAAGGCATTGAGAGGGGGA
GGAAGAGAGAGCACTTACGGATGCATGCAATAAACGTACAAGAAAATCTT
GAGTACCTCTTTTATTCCATCTATCCCCGCCACAAGTCCTGCCCCAACCC
TGAGGATCCTCTGAACAACCAAGTTGCAGAGCTCTGGAAGGCCGATGAAG
ACCGCGCCATCGCCAACGCCAAGGAATGGACACGCCTCTACGCCACAAAG
TCATGAAGAGGACGACAGTAGCAAGGGTAGATGTAATAAATAGCAACCGC
GGCACTCGATACGGGGGTAGTCGATGGATAGTATGGCGTAACATACGCAC
TTACATACGCCCATGCCAATGTGAAGTAGGCGCCAGGAGGGGAAAAAAGA
ATTAGGGGAAGGAGAAAGAAAAGCCAGAAGAAAAGGGGACGTGTTTATGA
AGGAGAGGGTGGAGAAAGGAAGGAGTAGGAGGACGTCGAGAAAAATGAAA
TGCTGAAGTGAGCAGCAGAAAAAAAGAAGAGACGAACTACAACAAGAACA
ACAACTAGAAAAACATAGAATTTGAAGAAAGGGATGCAAGCGTGGAATTA
TAACAAGGGCGGAAGCGGGATATCATACGTTGGGATGTTTCCGTGGACGA
TTTGACAGTGATAGAGCGAGAAGGAAGGAATAGATGGATGATGCGCCCCG
TCCCCTTTGAGTATGCATTCCCCAGGCACAACGCCAAAAGCATCAACACG
ACAAGACCAATACAATTAGGCAGGGAGTTGATGGGAATATTACTCTTCCT
GGTATCAAGTGCATCCTCTCAATTGTTAATTAAAATTTTGTTTGGCTATG
ATATCGAATATTTCATAATTTTCAATTTTCATTTCGCGTGTTATTCTTAC
ATCCTCCATACCGGGAAGCATTTCCTCGCCGACCTATTGACACAATCTTC
AAGGTGACGCACAAGCAAGACTTTCCTGCAGCACCGTACTACCTTTCACA
ATTCCATCTTCCCATTCCCCTCTTCTTCTCCTTCCTCTGCCC
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Coding sequence (CDS) from alignment at scaffold_13:305273..307164-

>mRNA_5383 ID=mRNA_5383|Name=jgi.p|Nanoce1779_2|592361|organism=Nannochloropsis oceanica|type=CDS|length=2295bp|location=Sequence derived from alignment at scaffold_13:305273..307164- (Nannochloropsis oceanica)
TCCTGCCCCAACCCTGAGGATCCTCTGAACAACCAAGTTGCAGAGCTCTG
GAAGGCCGATGAAGACCGCGCCATCGCCAACGCCAAGGAATGGACACGCC
TCTACGCCACAAAGTCATGAAGGGCACCTTCAAGCTGGAACTCTTCCTCC
CCGCCGACTACCCCATGGCCCCTCCCAAGGTCCGCTTTCTGACCAAGATG
TACCACCCCAACATCGACAAGCTCGGCCGCATCTGTCTGGATATTCTTAA
GGACAAGTGGTCCCCTGCTCTGCAGATTCGCACCGTCCTCCTCTCCATTC
AAGCCCTCCTGTTCCTGGAATTCATGCCACGCCCTACGAAGACAATTTCC
GGTATTTCAGCGTTGTGATAGAAGGGCCCGAATCCTCTCCTTACCAACGA
GACACAGAGACTCATATCCGAACCAGATGTCTGCGACGTTGCCTCGGCGC
ATTGTCAAGTCCTGCCCCAACCCTGAGGATCCTCTGAACAACCAAGTTGC
AGAGCTCTGGAAGGCCGATGAAGACCGCGCCATCGCCAACGCCAAGGAAT
GGACACGCCTCTACGCCACAAAGTCATGAAGGGCACCTTCAAGCTGGAAC
TCTTCCTCCCCGCCGACTACCCCATGGCCCCTCCCAAGGTCCGCTTTCTG
ACCAAGATGTACCACCCCAACATCGACAAGCTCGGCCGCATCTGTCTGGA
TATTCTTAAGGACAAGTGGTCCCCTGCTCTGCAGATTCGCACCGTCCTCC
TCTCCATTCAAGCCCTCCTGTTCCTGGAATTCATGCCACGCCCTACGAAG
ACAATTTCCGGTATTTCAGCGTTGTGATAGAAGGGCCCGAATCCTCTCCT
TACCAACGAGACACAGAGACTCATATCCGAACCAGATGTCTGCGACGTTG
CCTCGGCGCATTGTCAAGTCCTGCCCCAACCCTGAGGATCCTCTGAACAA
CCAAGTTGCAGAGCTCTGGAAGGCCGATGAAGACCGCGCCATCGCCAACG
CCAAGGAATGGACACGCCTCTACGCCACAAAGTCATGAAGGGCACCTTCA
AGCTGGAACTCTTCCTCCCCGCCGACTACCCCATGGCCCCTCCCAAGGTC
CGCTTTCTGACCAAGATGTACCACCCCAACATCGACAAGCTCGGCCGCAT
CTGTCTGGATATTCTTAAGGACAAGTGGTCCCCTGCTCTGCAGATTCGCA
CCGTCCTCCTCTCCATTCAAGCCCTCCTGTTCCTGGAATTCATGCCACGC
CCTACGAAGACAATTTCCGGTATTTCAGCGTTGTGATAGAAGGGCCCGAA
TCCTCTCCTTACCAACGAGACACAGAGACTCATATCCGAACCAGATGTCT
GCGACGTTGCCTCGGCGCATTGTCAAGTCCTGCCCCAACCCTGAGGATCC
TCTGAACAACCAAGTTGCAGAGCTCTGGAAGGCCGATGAAGACCGCGCCA
TCGCCAACGCCAAGGAATGGACACGCCTCTACGCCACAAAGTCATGAAGG
GCACCTTCAAGCTGGAACTCTTCCTCCCCGCCGACTACCCCATGGCCCCT
CCCAAGGTCCGCTTTCTGACCAAGATGTACCACCCCAACATCGACAAGCT
CGGCCGCATCTGTCTGGATATTCTTAAGGACAAGTGGTCCCCTGCTCTGC
AGATTCGCACCGTCCTCCTCTCCATTCAAGCCCTCCTGTTCCTGGAATTC
ATGCCACGCCCTACGAAGACAATTTCCGGTATTTCAGCGTTGTGATAGAA
GGGCCCGAATCCTCTCCTTACCAACGAGACACAGAGACTCATATCCGAAC
CAGATGTCTGCGACGTTGCCTCGGCGCATTGTCAAGTCCTGCCCCAACCC
TGAGGATCCTCTGAACAACCAAGTTGCAGAGCTCTGGAAGGCCGATGAAG
ACCGCGCCATCGCCAACGCCAAGGAATGGACACGCCTCTACGCCACAAAG
TCATGAAGGGCACCTTCAAGCTGGAACTCTTCCTCCCCGCCGACTACCCC
ATGGCCCCTCCCAAGGTCCGCTTTCTGACCAAGATGTACCACCCCAACAT
CGACAAGCTCGGCCGCATCTGTCTGGATATTCTTAAGGACAAGTGGTCCC
CTGCTCTGCAGATTCGCACCGTCCTCCTCTCCATTCAAGCCCTCCTGTTC
CTGGAATTCATGCCACGCCCTACGAAGACAATTTCCGGTATTTCAGCGTT
GTGATAGAAGGGCCCGAATCCTCTCCTTACCAACGAGACACAGAGACTCA
TATCCGAACCAGATGTCTGCGACGTTGCCTCGGCGCATTGTCAAG
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Synonyms
Publications