jgi.p|Nanoce1779_2|529422, mRNA_5382 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529422
Unique NamemRNA_5382
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1314
Alignment locationscaffold_13:304006..305319 +

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Properties
Property NameValue
TranscriptId529508
TrackFilteredModels2
ProteinId529422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:304006..305319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529422gene_5382Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529422mRNA_5382-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5382CDS_5382Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5382 ID=mRNA_5382|Name=jgi.p|Nanoce1779_2|529422|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ATGGACCCTGAGTTGCGGTATTTTTTGACTGTCAAAACCCACACCAATAT
ATCCCAAATCGCGGAGGAAGAATGGAATTCCATGCTGCGTTTCGAAGACT
CACCCTTCTTGCACCACCAATGGCTGAATTGCATGGAGACTAGTGGATGC
GCCATTCCGGCCACAGGGTGGAACCCGTGTCATCTCACCATTCGCATGGT
CAAGGGCAAGGATGGAGAAGTCACAGACCCCAATGATCCTGGAGATTTGG
TGGCAGCTGCACCAGTATACATTAAGACACACAGCATGGGCGAGTTTATT
TTTGACAATGAATGGGCGAATGCCGCCTATCGCTCCGGCATCGACTATTA
CCCGAAAGTTCTATGTGCGGTACCTTTTACTCCGGCCTCCGGCGCCCGGC
TGCTGCTCAAGCAAGGCTTATCTCAACCGATGCAGCAGGAAATCAGGCGG
ATGGTTGGAGTGTTTTTGCAAGAGCTGGCGAAGAACAACGAGTTTTCATC
GGTCCACGTGAATTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAGTGCCA
CCTCCCCTCCCTACTTGCACCGGACCTCCATGCAATTTCACTGGAGGAAT
GAGAATAAGGACAAGGAAGGGGCGCCGTATGACAGTTTCGACGAGTACTT
GGCGGCGTTTCGGAGCAAGCGGAGGATAAAGATCAAGAAGGAAAGGAGGA
CTGTTTACGAGGCCGGTCTCACGTTAGACGTCTACAGGGGGAAGGAGATA
CCAGATAGTTTCTTTGATGACGACACAATCTTCAAACTGTACGTGAGCAC
GATTGACAAGCTGTTTTATGGGCGGCAATATTTGAATGAAGAATTCTTCC
GGATGCTCAAGGAGAAATTTCGGGACCCGTTATGCTTGGTGGTTGCCAAG
GATGCAAAGGGGGAGATCGTGGCTGGGACCTTCAATGTGATCGGTAATGA
CAAGCGATTCTATGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGAAATTA
AAAACTTGCACTTTGAGACGTGTTACTACAAGTCGATTGAGTACTGTATC
GAGAAAGGCTTGGCCGCCATGGAGCCGGGAGCGGGAAATTCCGACTTCAA
GTTTATGCGAGGCTTTGAGCCGGCCCAGGTGCACTCAATGCATCACATTG
TCCACCCCGGATTACGGCAAGCGGTTGACGACTTTTTGAAGTACGAAAGG
AGGGAAGTAGCGGGCACGGTGGATTACTTGAGTGGGAAGAGCGCTGTGCG
GGCCAGGGGAGGGAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAATGGGA
AGATGGAATTGTGA
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protein sequence of jgi.p|Nanoce1779_2|529422

>mRNA_5382-protein ID=mRNA_5382-protein|Name=jgi.p|Nanoce1779_2|529422|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MDPELRYFLTVKTHTNISQIAEEEWNSMLRFEDSPFLHHQWLNCMETSGC
AIPATGWNPCHLTIRMVKGKDGEVTDPNDPGDLVAAAPVYIKTHSMGEFI
FDNEWANAAYRSGIDYYPKVLCAVPFTPASGARLLLKQGLSQPMQQEIRR
MVGVFLQELAKNNEFSSVHVNFCQEEEVAPLSATSPPYLHRTSMQFHWRN
ENKDKEGAPYDSFDEYLAAFRSKRRIKIKKERRTVYEAGLTLDVYRGKEI
PDSFFDDDTIFKLYVSTIDKLFYGRQYLNEEFFRMLKEKFRDPLCLVVAK
DAKGEIVAGTFNVIGNDKRFYGRYWGCVLPEEIKNLHFETCYYKSIEYCI
EKGLAAMEPGAGNSDFKFMRGFEPAQVHSMHHIVHPGLRQAVDDFLKYER
REVAGTVDYLSGKSAVRARGGKGAEEGEEEGNGKMEL*
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mRNA from alignment at scaffold_13:304006..305319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5382 ID=mRNA_5382|Name=jgi.p|Nanoce1779_2|529422|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at scaffold_13:304006..305319+ (Nannochloropsis oceanica)
ATGGACCCTGAGTTGCGGTATTTTTTGACTGTCAAAACCCACACCAATAT ATCCCAAATCGCGGAGGAAGAATGGAATTCCATGCTGCGTTTCGAAGACT CACCCTTCTTGCACCACCAATGGCTGAATTGCATGGAGACTAGTGGATGC GCCATTCCGGCCACAGGGTGGAACCCGTGTCATCTCACCATTCGCATGGT CAAGGGCAAGGATGGAGAAGTCACAGACCCCAATGATCCTGGAGATTTGG TGGCAGCTGCACCAGTATACATTAAGACACACAGCATGGGCGAGTTTATT TTTGACAATGAATGGGCGAATGCCGCCTATCGCTCCGGCATCGACTATTA CCCGAAAGTTCTATGTGCGGTACCTTTTACTCCGGCCTCCGGCGCCCGGC TGCTGCTCAAGCAAGGCTTATCTCAACCGATGCAGCAGGAAATCAGGCGG ATGGTTGGAGTGTTTTTGCAAGAGCTGGCGAAGAACAACGAGTTTTCATC GGTCCACGTGAATTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAGTGCCA CCTCCCCTCCCTACTTGCACCGGACCTCCATGCAATTTCACTGGAGGAAT GAGAATAAGGACAAGGAAGGGGCGCCGTATGACAGTTTCGACGAGTACTT GGCGGCGTTTCGGAGCAAGCGGAGGATAAAGATCAAGAAGGAAAGGAGGA CTGTTTACGAGGCCGGTCTCACGTTAGACGTCTACAGGGGGAAGGAGATA CCAGATAGTTTCTTTGATGACGACACAATCTTCAAACTGTACGTGAGCAC GATTGACAAGCTGTTTTATGGGCGGCAATATTTGAATGAAGAATTCTTCC GGATGCTCAAGGAGAAATTTCGGGACCCGTTATGCTTGGTGGTTGCCAAG GATGCAAAGGGGGAGATCGTGGCTGGGACCTTCAATGTGATCGGTAATGA CAAGCGATTCTATGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGAAATTA AAAACTTGCACTTTGAGACGTGTTACTACAAGTCGATTGAGTACTGTATC GAGAAAGGCTTGGCCGCCATGGAGCCGGGAGCGGGAAATTCCGACTTCAA GTTTATGCGAGGCTTTGAGCCGGCCCAGGTGCACTCAATGCATCACATTG TCCACCCCGGATTACGGCAAGCGGTTGACGACTTTTTGAAGTACGAAAGG AGGGAAGTAGCGGGCACGGTGGATTACTTGAGTGGGAAGAGCGCTGTGCG GGCCAGGGGAGGGAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAATGGGA AGATGGAATTGTGA
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Coding sequence (CDS) from alignment at scaffold_13:304006..305319+

>mRNA_5382 ID=mRNA_5382|Name=jgi.p|Nanoce1779_2|529422|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_13:304006..305319+ (Nannochloropsis oceanica)
ATGGACCCTGAGTTGCGGTATTTTTTGACTGTCAAAACCCACACCAATAT
ATCCCAAATCGCGGAGGAAGAATGGAATTCCATGCTGCGTTTCGAAGACT
CACCCTTCTTGCACCACCAATGGCTGAATTGCATGGAGACTAGTGGATGC
GCCATTCCGGCCACAGGGTGGAACCCGTGTCATCTCACCATTCGCATGGT
CAAGGGCAAGGATGGAGAAGTCACAGACCCCAATGATCCTGGAGATTTGG
TGGCAGCTGCACCAGTATACATTAAGACACACAGCATGGGCGAGTTTATT
TTTGACAATGAATGGGCGAATGCCGCCTATCGCTCCGGCATCGACTATTA
CCCGAAAGTTCTATGTGCGGTACCTTTTACTCCGGCCTCCGGCGCCCGGC
TGCTGCTCAAGCAAGGCTTATCTCAACCGATGCAGCAGGAAATCAGGCGG
ATGGTTGGAGTGTTTTTGCAAGAGCTGGCGAAGAACAACGAGTTTTCATC
GGTCCACGTGAATTTCTGCCAGGAGGAAGAGGTGGCGCCTTTGAGTGCCA
CCTCCCCTCCCTACTTGCACCGGACCTCCATGCAATTTCACTGGAGGAAT
GAGAATAAGGACAAGGAAGGGGCGCCGTATGACAGTTTCGACGAGTACTT
GGCGGCGTTTCGGAGCAAGCGGAGGATAAAGATCAAGAAGGAAAGGAGGA
CTGTTTACGAGGCCGGTCTCACGTTAGACGTCTACAGGGGGAAGGAGATA
CCAGATAGTTTCTTTGATGACGACACAATCTTCAAACTGTACGTGAGCAC
GATTGACAAGCTGTTTTATGGGCGGCAATATTTGAATGAAGAATTCTTCC
GGATGCTCAAGGAGAAATTTCGGGACCCGTTATGCTTGGTGGTTGCCAAG
GATGCAAAGGGGGAGATCGTGGCTGGGACCTTCAATGTGATCGGTAATGA
CAAGCGATTCTATGGCCGGTATTGGGGTTGTGTCCTGCCGGAGGAAATTA
AAAACTTGCACTTTGAGACGTGTTACTACAAGTCGATTGAGTACTGTATC
GAGAAAGGCTTGGCCGCCATGGAGCCGGGAGCGGGAAATTCCGACTTCAA
GTTTATGCGAGGCTTTGAGCCGGCCCAGGTGCACTCAATGCATCACATTG
TCCACCCCGGATTACGGCAAGCGGTTGACGACTTTTTGAAGTACGAAAGG
AGGGAAGTAGCGGGCACGGTGGATTACTTGAGTGGGAAGAGCGCTGTGCG
GGCCAGGGGAGGGAAGGGGGCAGAGGAAGGAGAAGAAGAGGGGAATGGGA
AGATGGAATTGTGA
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Synonyms
Publications