jgi.p|Nanoce1779_2|631018, mRNA_5380 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631018
Unique Name	mRNA_5380
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2029
Alignment location	scaffold_13:300080..302108 +

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Properties


Property Name	Value
TranscriptId	631104
Track	FilteredModels2
ProteinId	631018

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:300080..302108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631018	gene_5380	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631018	mRNA_5380-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5380	CDS_5380	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:300080..302108+
coding sequence from alignment at scaffold_13:300080..302108+

mRNA sequence

>mRNA_5380 ID=mRNA_5380|Name=jgi.p|Nanoce1779_2|631018|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
CCCGCGGAGGAGTCCGAGAGTCTCAACAACAGACAGGCACGCAAAAAGTC
AAACAAAAATTTTCCAGTACGACTCACGCATTTCAAGCGCGCTAAAAATG
CACGTTGAGCACTCTCTCTTTACACTCTAACCACACGCACATTTTCCTCA
AGGTTTAACAGGTCCTGGTTCACCTTGCTTCGCTTCACACTTCTTATCCT
ACATAATTTCTGGCAGCAGCAGCCACGCCCGACTTCGACCAGGGATACTT
CCCAAAGCTAGCCAGCCATGAAGGAGGTTCTGACCATCCAAGCAGGCCAC
TATGCCAATTGGGTCGGGACACATTTTTGGAACATGCAGATGGAGGACCT
GGTTGTGGAGGAGGATAAGGGCGAGCACAAGAATGGCCAGGAAGGCGCCC
GTCAGCCGCCGCAGACCCGATTCCGGCGGCGCAGCAAAATCCTGACCGAG
GCGGGCAACCCACGTCTCCTCCTGTTTGACGTGGCTCAAGAAATCGACCC
ATTCCGAGGACCCTACCACCAGCACAGTCGGCCACAACAACCTCCGTCAA
CGGGGAAGCTAGACAAGGAAAAGACGACCTTACCCTGGGACGGGGCGATT
GAGGTCCATCACCTTGCGCCGCCCGCGACACGACCACGGCAACAGCCGTC
CACTGAAGCTCAGGGTAAGCCATCACCGTCTTTCTCATCCCCAAACCCAA
GCTTTTGGTCCGCGGCGTGGCGAGGAGCTCCCTTAGACGTGACGCGGAAT
TGCGTGGTGGTGCAAGAGTACGAAGATGACAGTGTCAACAAGGGGAGCGG
AAGCGTGGGGGCTGGCCGGGGTGAAGACCAACTACACCGCTTGCTCGAAG
AATGCGATGCTCCCCAAGGTCTGCAACTTTTGCTGGACCTGGCGCGACCT
GCCTTGGGGTTGGGGGTGAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGG
AAGGGGAGCCCTAGCATGCTACGCCTATAACCCCCCTTTCAACACCGGTT
CCCGGAAGCAAGACGCCACCCGTGTTGCCGACACGGCACTTGGCATTAAG
GCCTTGCTAGAGACAGGAGCTTTGCTGATACCGTCTGCGATGGACGCTGT
CCTACCCTCATCCTCTCCTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCT
ACGGCAGCAGCGCTTTGCAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTG
TACCGAGCAGTCGACGAAGGAGGCGATGTGGGTAGTTGTCATATGCGGGA
GTGGGTGCATGGGATTCGCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGC
TAGGGTTGCCTTTCCCGTGGGCGGGAGCGGGGATAGAGGAAGAGATGATT
ACGTCTCGAGGGGCGCTGGACCACGTGCTTCGACCAAAAGCAGACGAAGG
CACGTGTAGCAACAACAGAAATAGCAATGATAGCTCTGGCCTCCACCACA
CTGGATTTTTGGACCACTTGATCTCCTTGGCCCCGCGGACAAGGATCACA
AGGACGACCAAAATGGAAGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAG
CTTCATCCAACGACGGCGTCTCACAGCCATTACCAGCATGTATGGTCTTC
CCCTTCCGGTGCATGTCGTGCGCGATTCGCTCGACGAGGCTCTAAAATGC
TATTCTTGGTTTCAACCTCATCTCAACTTTGTCTCCTCCACCCGGCTACC
TGTCCATCGACTCCCTTCCACTCTCTCCTTTCAATGCCCGGGGCGAGAGC
AGCGCGTGGTAGACTCTACAGGGGCTAGTTGCTTCTCACTCATTGGGTGT
ACGTCCGCCGTAGCTCCGTTTTTGGAAGAAATCGCAAGTACGTTTGCGGA
AAGGGGTCCCGTGGTGCGCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGA
GCGAGGATTTGGGAGAGGTGGATGCCATGCTGGCCGATTTGCTAGAGAGT
GGGATACAGCGAGATGTAGAACTGTGAGTAAACGTGATAATAGTAGGCAA
AAAGCAGATATTATATGTCCGTCTTGTTC

protein sequence of jgi.p|Nanoce1779_2|631018

>mRNA_5380-protein ID=mRNA_5380-protein|Name=jgi.p|Nanoce1779_2|631018|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MKEVLTIQAGHYANWVGTHFWNMQMEDLVVEEDKGEHKNGQEGARQPPQT
RFRRRSKILTEAGNPRLLLFDVAQEIDPFRGPYHQHSRPQQPPSTGKLDK
EKTTLPWDGAIEVHHLAPPATRPRQQPSTEAQGKPSPSFSSPNPSFWSAA
WRGAPLDVTRNCVVVQEYEDDSVNKGSGSVGAGRGEDQLHRLLEECDAPQ
GLQLLLDLARPALGLGVSAAEEFMEEVGRGALACYAYNPPFNTGSRKQDA
TRVADTALGIKALLETGALLIPSAMDAVLPSSSPSKKFVGVVDVYGSSAL
QATALEAVSGVYRAVDEGGDVGSCHMREWVHGIRSGACSLAAVELGLPFP
WAGAGIEEEMITSRGALDHVLRPKADEGTCSNNRNSNDSSGLHHTGFLDH
LISLAPRTRITRTTKMEGSSSGAMESGSFIQRRRLTAITSMYGLPLPVHV
VRDSLDEALKCYSWFQPHLNFVSSTRLPVHRLPSTLSFQCPGREQRVVDS
TGASCFSLIGCTSAVAPFLEEIASTFAERGPVVRQRLLEERGLLSEDLGE
VDAMLADLLESGIQRDVEL*

mRNA from alignment at scaffold_13:300080..302108+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5380 ID=mRNA_5380|Name=jgi.p|Nanoce1779_2|631018|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at scaffold_13:300080..302108+ (Nannochloropsis oceanica)
CCCGCGGAGGAGTCCGAGAGTCTCAACAACAGACAGGCACGCAAAAAGTC
AAACAAAAATTTTCCAGTACGACTCACGCATTTCAAGCGCGCTAAAAATG
CACGTTGAGCACTCTCTCTTTACACTCTAACCACACGCACATTTTCCTCA
AGGTTTAACAGGTCCTGGTTCACCTTGCTTCGCTTCACACTTCTTATCCT
ACATAATTTCTGGCAGCAGCAGCCACGCCCGACTTCGACCAGGGATACTT
CCCAAAGCTAGCCAGCCATGAAGGAGGTTCTGACCATCCAAGCAGGCCAC
TATGCCAATTGGGTCGGGACACATTTTTGGAACATGCAGATGGAGGACCT
GGTTGTGGAGGAGGATAAGGGCGAGCACAAGAATGGCCAGGAAGGCGCCC
GTCAGCCGCCGCAGACCCGATTCCGGCGGCGCAGCAAAATCCTGACCGAG
GCGGGCAACCCACGTCTCCTCCTGTTTGACGTGGCTCAAGAAATCGACCC
ATTCCGAGGACCCTACCACCAGCACAGTCGGCCACAACAACCTCCGTCAA
CGGGGAAGCTAGACAAGGAAAAGACGACCTTACCCTGGGACGGGGCGATT
GAGGTCCATCACCTTGCGCCGCCCGCGACACGACCACGGCAACAGCCGTC
CACTGAAGCTCAGGGTAAGCCATCACCGTCTTTCTCATCCCCAAACCCAA
GCTTTTGGTCCGCGGCGTGGCGAGGAGCTCCCTTAGACGTGACGCGGAAT
TGCGTGGTGGTGCAAGAGTACGAAGATGACAGTGTCAACAAGGGGAGCGG
AAGCGTGGGGGCTGGCCGGGGTGAAGACCAACTACACCGCTTGCTCGAAG
AATGCGATGCTCCCCAAGGTCTGCAACTTTTGCTGGACCTGGCGCGACCT
GCCTTGGGGTTGGGGGTGAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGG
AAGGGGAGCCCTAGCATGCTACGCCTATAACCCCCCTTTCAACACCGGTT
CCCGGAAGCAAGACGCCACCCGTGTTGCCGACACGGCACTTGGCATTAAG
GCCTTGCTAGAGACAGGAGCTTTGCTGATACCGTCTGCGATGGACGCTGT
CCTACCCTCATCCTCTCCTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCT
ACGGCAGCAGCGCTTTGCAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTG
TACCGAGCAGTCGACGAAGGAGGCGATGTGGGTAGTTGTCATATGCGGGA
GTGGGTGCATGGGATTCGCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGC
TAGGGTTGCCTTTCCCGTGGGCGGGAGCGGGGATAGAGGAAGAGATGATT
ACGTCTCGAGGGGCGCTGGACCACGTGCTTCGACCAAAAGCAGACGAAGG
CACGTGTAGCAACAACAGAAATAGCAATGATAGCTCTGGCCTCCACCACA
CTGGATTTTTGGACCACTTGATCTCCTTGGCCCCGCGGACAAGGATCACA
AGGACGACCAAAATGGAAGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAG
CTTCATCCAACGACGGCGTCTCACAGCCATTACCAGCATGTATGGTCTTC
CCCTTCCGGTGCATGTCGTGCGCGATTCGCTCGACGAGGCTCTAAAATGC
TATTCTTGGTTTCAACCTCATCTCAACTTTGTCTCCTCCACCCGGCTACC
TGTCCATCGACTCCCTTCCACTCTCTCCTTTCAATGCCCGGGGCGAGAGC
AGCGCGTGGTAGACTCTACAGGGGCTAGTTGCTTCTCACTCATTGGGTGT
ACGTCCGCCGTAGCTCCGTTTTTGGAAGAAATCGCAAGTACGTTTGCGGA
AAGGGGTCCCGTGGTGCGCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGA
GCGAGGATTTGGGAGAGGTGGATGCCATGCTGGCCGATTTGCTAGAGAGT
GGGATACAGCGAGATGTAGAACTGTGAGTAAACGTGATAATAGTAGGCAA
AAAGCAGATATTATATGTCCGTCTTGTTC

Coding sequence (CDS) from alignment at scaffold_13:300080..302108+

>mRNA_5380 ID=mRNA_5380|Name=jgi.p|Nanoce1779_2|631018|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_13:300080..302108+ (Nannochloropsis oceanica)
ATGAAGGAGGTTCTGACCATCCAAGCAGGCCACTATGCCAATTGGGTCGG
GACACATTTTTGGAACATGCAGATGGAGGACCTGGTTGTGGAGGAGGATA
AGGGCGAGCACAAGAATGGCCAGGAAGGCGCCCGTCAGCCGCCGCAGACC
CGATTCCGGCGGCGCAGCAAAATCCTGACCGAGGCGGGCAACCCACGTCT
CCTCCTGTTTGACGTGGCTCAAGAAATCGACCCATTCCGAGGACCCTACC
ACCAGCACAGTCGGCCACAACAACCTCCGTCAACGGGGAAGCTAGACAAG
GAAAAGACGACCTTACCCTGGGACGGGGCGATTGAGGTCCATCACCTTGC
GCCGCCCGCGACACGACCACGGCAACAGCCGTCCACTGAAGCTCAGGGTA
AGCCATCACCGTCTTTCTCATCCCCAAACCCAAGCTTTTGGTCCGCGGCG
TGGCGAGGAGCTCCCTTAGACGTGACGCGGAATTGCGTGGTGGTGCAAGA
GTACGAAGATGACAGTGTCAACAAGGGGAGCGGAAGCGTGGGGGCTGGCC
GGGGTGAAGACCAACTACACCGCTTGCTCGAAGAATGCGATGCTCCCCAA
GGTCTGCAACTTTTGCTGGACCTGGCGCGACCTGCCTTGGGGTTGGGGGT
GAGCGCCGCGGAGGAGTTCATGGAGGAGGTAGGAAGGGGAGCCCTAGCAT
GCTACGCCTATAACCCCCCTTTCAACACCGGTTCCCGGAAGCAAGACGCC
ACCCGTGTTGCCGACACGGCACTTGGCATTAAGGCCTTGCTAGAGACAGG
AGCTTTGCTGATACCGTCTGCGATGGACGCTGTCCTACCCTCATCCTCTC
CTAGTAAGAAGTTTGTGGGTGTTGTTGATGTCTACGGCAGCAGCGCTTTG
CAGGCTACGGCGCTTGAAGCAGTCTCGGGCGTGTACCGAGCAGTCGACGA
AGGAGGCGATGTGGGTAGTTGTCATATGCGGGAGTGGGTGCATGGGATTC
GCTCAGGAGCTTGCAGTCTGGCGGCGGTGGAGCTAGGGTTGCCTTTCCCG
TGGGCGGGAGCGGGGATAGAGGAAGAGATGATTACGTCTCGAGGGGCGCT
GGACCACGTGCTTCGACCAAAAGCAGACGAAGGCACGTGTAGCAACAACA
GAAATAGCAATGATAGCTCTGGCCTCCACCACACTGGATTTTTGGACCAC
TTGATCTCCTTGGCCCCGCGGACAAGGATCACAAGGACGACCAAAATGGA
AGGCAGCAGCAGCGGCGCCATGGAGAGCGGCAGCTTCATCCAACGACGGC
GTCTCACAGCCATTACCAGCATGTATGGTCTTCCCCTTCCGGTGCATGTC
GTGCGCGATTCGCTCGACGAGGCTCTAAAATGCTATTCTTGGTTTCAACC
TCATCTCAACTTTGTCTCCTCCACCCGGCTACCTGTCCATCGACTCCCTT
CCACTCTCTCCTTTCAATGCCCGGGGCGAGAGCAGCGCGTGGTAGACTCT
ACAGGGGCTAGTTGCTTCTCACTCATTGGGTGTACGTCCGCCGTAGCTCC
GTTTTTGGAAGAAATCGCAAGTACGTTTGCGGAAAGGGGTCCCGTGGTGC
GCCAGAGGCTGCTGGAGGAGAGGGGGCTGTTGAGCGAGGATTTGGGAGAG
GTGGATGCCATGCTGGCCGATTTGCTAGAGAGTGGGATACAGCGAGATGT
AGAACTGTGA

Synonyms

Publications