jgi.p|Nanoce1779_2|592348, mRNA_5379 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592348
Unique NamemRNA_5379
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2079
Alignment locationscaffold_13:298026..300104 -

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Properties
Property NameValue
TranscriptId592434
TrackFilteredModels2
ProteinId592348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:298026..300104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592348gene_5379Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592348mRNA_5379-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5379CDS_5379Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5379 ID=mRNA_5379|Name=jgi.p|Nanoce1779_2|592348|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
TGAGACTCTCGGACTCCTCCGCGGGGTCCGGTCAGTTCAACAAGTTGTGA
CTCTCGGAAGCTGTCCGATGATGCCGATGATGGTGGGATGTGCGATGCAA
TTATGATGCTGAGACCCAAATCATTACATCGCTTTCTCCTCCCTTGCGTG
TCAGTGTCCACATAGGAACAAAATTTTGGTGTCGTGGTCGCGCTGGTAGT
TCGGCAGGCTCGGTCGATGAGAAGGCAATAATACCGACCAGGGCTTCACG
CACGCAACCACGGTCAGGTCGCGCTCCACACTCCGCAGCCGGCATGGACA
ACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGGGCAACCT
ACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGTCGGCCTG
GACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAGCAACTGC
AAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGAGCGTCAA
ATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGGTTGGCCG
CATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGACATGATTC
AGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAACGCCAAT
TGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTGGGGCAGT
GGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATTCATGAGG
GCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCATCACGGC
CCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGACGCAGTT
TACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACAGACTTCA
GCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGACATTGGCG
ACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCCGGATAAT
GAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGAAAGAAGT
CCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTTGTATGAT
TTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGGAGGTGCT
GGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTTGCCTGCC
CGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGATAAGCAT
TGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCAGCGGTGG
TGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCAGGAATGG
GATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAAGGCGAGC
AGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCGCTGAGAC
GCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAAGTGACGG
CTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTCTCTGGCC
GCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCGAGGGGGA
AAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGTGAGTACA
AGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGACTGGGTGG
TGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATCTACAAGG
TGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAAAAAGAAC
AAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTTTCAGGAG
CTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCAGCAGCAT
TGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAGCATGCCTCTC
CGTGAGTGTCTGCGAAAGGCTTAAGGCGGAGAAACAACAACTAAGTAGCT
TGTGAATGTAAATAATGCCGAGAATGGAAGGCCAAAACAAAGCAAATTAA
CAACGTGCTCCCTAAGTAGCTTACTTGAA
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protein sequence of jgi.p|Nanoce1779_2|592348

>mRNA_5379-protein ID=mRNA_5379-protein|Name=jgi.p|Nanoce1779_2|592348|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MDNPATRLPAAVATDNGQPTPPSSTSTTAGLEQSAWTAQEKRVLESARYK
QLQSCAGNMAFELGCLERQIIAAVAPEKSLSYVVGRIQEIYDEIRKTKCD
MIQGAPALRIGKQKCTNANCDNEDPNEFIPSRGGAVACRRCGDCQSDYVI
HEGEMYRNFTGEEDRSHHGPVLNPLYSASYNLGTQFTGLRGQKRNTGRET
DFSVSNIGRDAAAVGGTLATRVEYKDDQKSKAFRIMREQGANLALHGLVR
KKSSELFAAYRDARDRLYDFDAVVAACLIAAHLEVLVEEGSDGSRATFSF
ACPACGVAGFTAKRDADKHCVVSMGPSYSSSGGSGGGASSCSGAELPGLS
GMGSEGEGEGGVLGTRKASSNVAVDPEIHKLNLAETRRLLLWVSQGAPYQ
VTAVDGICKGLQAELKSLAAKGNDSDDEEEQGVEGEKLGWNTSGKMERES
EYKAGQLLIMASLKVLTGWCGKDQEAGRLFHDYLQGVKKRKSERDALREE
KEQDRKRRRQHEEKPIFQELAFPCKINGGNSSSSSIGRSSNSNFGGEQQH
ASP*
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mRNA from alignment at scaffold_13:298026..300104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5379 ID=mRNA_5379|Name=jgi.p|Nanoce1779_2|592348|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at scaffold_13:298026..300104- (Nannochloropsis oceanica)
TGAGACTCTCGGACTCCTCCGCGGGGTCCGGTCAGTTCAACAAGTTGTGA
CTCTCGGAAGCTGTCCGATGATGCCGATGATGGTGGGATGTGCGATGCAA
TTATGATGCTGAGACCCAAATCATTACATCGCTTTCTCCTCCCTTGCGTG
TCAGTGTCCACATAGGAACAAAATTTTGGTGTCGTGGTCGCGCTGGTAGT
TCGGCAGGCTCGGTCGATGAGAAGGCAATAATACCGACCAGGGCTTCACG
CACGCAACCACGGTCAGGTCGCGCTCCACACTCCGCAGCCGGCATGGACA
ACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGGGCAACCT
ACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGTCGGCCTG
GACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAGCAACTGC
AAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGAGCGTCAA
ATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGGTTGGCCG
CATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGACATGATTC
AGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAACGCCAAT
TGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTGGGGCAGT
GGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATTCATGAGG
GCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCATCACGGC
CCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGACGCAGTT
TACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACAGACTTCA
GCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGACATTGGCG
ACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCCGGATAAT
GAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGAAAGAAGT
CCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTTGTATGAT
TTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGGAGGTGCT
GGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTTGCCTGCC
CGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGATAAGCAT
TGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCAGCGGTGG
TGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCAGGAATGG
GATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAAGGCGAGC
AGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCGCTGAGAC
GCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAAGTGACGG
CTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTCTCTGGCC
GCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCGAGGGGGA
AAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGTGAGTACA
AGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGACTGGGTGG
TGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATCTACAAGG
TGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAAAAAGAAC
AAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTTTCAGGAG
CTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCAGCAGCAT
TGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAGCATGCCTCTC
CGTGAGTGTCTGCGAAAGGCTTAAGGCGGAGAAACAACAACTAAGTAGCT
TGTGAATGTAAATAATGCCGAGAATGGAAGGCCAAAACAAAGCAAATTAA
CAACGTGCTCCCTAAGTAGCTTACTTGAA
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Coding sequence (CDS) from alignment at scaffold_13:298026..300104-

>mRNA_5379 ID=mRNA_5379|Name=jgi.p|Nanoce1779_2|592348|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_13:298026..300104- (Nannochloropsis oceanica)
ATGGACAACCCCGCAACTCGTCTTCCAGCGGCAGTGGCAACCGACAACGG
GCAACCTACTCCTCCTTCGTCCACATCAACAACGGCGGGCTTGGAGCAGT
CGGCCTGGACTGCGCAAGAGAAACGCGTGCTCGAGTCGGCGCGGTACAAG
CAACTGCAAAGCTGTGCCGGCAACATGGCATTTGAGCTTGGGTGCCTGGA
GCGTCAAATCATCGCAGCAGTTGCTCCGGAAAAATCTCTTTCCTATGTGG
TTGGCCGCATCCAGGAAATCTACGACGAGATCCGCAAGACCAAGTGTGAC
ATGATTCAGGGCGCTCCTGCCCTGCGCATAGGCAAGCAGAAATGCACCAA
CGCCAATTGTGATAACGAAGACCCAAATGAATTTATCCCCAGTCGCGGTG
GGGCAGTGGCATGCAGGCGCTGTGGGGACTGTCAGTCTGATTATGTTATT
CATGAGGGCGAGATGTACCGCAACTTCACTGGGGAAGAGGATCGTTCGCA
TCACGGCCCGGTCCTGAACCCACTGTATTCGGCTTCGTATAATTTGGGGA
CGCAGTTTACTGGTTTGCGGGGCCAAAAACGCAACACGGGGCGAGAGACA
GACTTCAGCGTCAGCAATATTGGTCGGGACGCAGCTGCTGTTGGGGGGAC
ATTGGCGACGAGGGTGGAGTATAAGGATGATCAAAAGTCGAAGGCTTTCC
GGATAATGAGGGAGCAAGGGGCAAATCTAGCTCTGCATGGATTGGTGCGA
AAGAAGTCCTCGGAACTTTTTGCCGCTTATCGTGATGCGCGTGACCGGTT
GTATGATTTTGATGCCGTAGTGGCTGCATGTTTGATTGCTGCTCATCTGG
AGGTGCTGGTGGAGGAAGGTTCGGATGGGAGTCGGGCAACCTTTTCATTT
GCCTGCCCGGCTTGTGGCGTAGCCGGGTTTACTGCAAAGCGAGATGCCGA
TAAGCATTGCGTGGTCAGTATGGGACCAAGCTACAGCAGCAGTGGTGGCA
GCGGTGGTGGCGCCAGCAGTTGTAGTGGTGCGGAACTGCCAGGCCTCTCA
GGAATGGGATCAGAAGGGGAGGGTGAAGGAGGAGTGTTGGGCACGCGTAA
GGCGAGCAGCAACGTCGCAGTAGACCCGGAGATTCACAAATTGAACCTCG
CTGAGACGCGTCGGTTGCTGTTGTGGGTGTCGCAAGGTGCACCTTACCAA
GTGACGGCTGTGGATGGGATATGTAAGGGCTTGCAGGCGGAGCTGAAGTC
TCTGGCCGCGAAGGGAAACGACTCGGACGACGAGGAAGAGCAGGGGGTCG
AGGGGGAAAAATTAGGGTGGAATACGTCTGGGAAGATGGAGCGGGAGAGT
GAGTACAAGGCGGGTCAGTTGTTGATTATGGCTAGCCTCAAGGTGCTGAC
TGGGTGGTGCGGGAAGGATCAGGAGGCGGGTCGGCTTTTCCATGACTATC
TACAAGGTGTGAAGAAGCGAAAGAGTGAGCGAGATGCGTTGCGGGAGGAA
AAAGAACAAGACCGGAAGCGTCGTCGGCAACATGAAGAGAAGCCAATTTT
TCAGGAGCTCGCTTTTCCTTGCAAGATTAATGGCGGGAACAGCAGCAGCA
GCAGCATTGGTAGAAGTAGTAATAGCAACTTCGGTGGCGAGCAGCAGCAT
GCCTCTCCGTGA
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Synonyms
Publications