jgi.p|Nanoce1779_2|592309, mRNA_5375 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592309
Unique Name	mRNA_5375
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2059
Alignment location	scaffold_13:282668..284726 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592395
Track	FilteredModels2
ProteinId	592309

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:282668..284726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592309	gene_5375	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592309	mRNA_5375-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5375	CDS_5375	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:282668..284726+
coding sequence from alignment at scaffold_13:282668..284726+

mRNA sequence

>mRNA_5375 ID=mRNA_5375|Name=jgi.p|Nanoce1779_2|592309|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp
AGACAAGGCACATTTTCCCACAGAGAGGATTAACAATGCAAGGGATGTCG
CAGCGGCCACCATTTGCTGCTGCTGGGGGACCCACGACAGCACTTCTCCT
GTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGCAGGCGCAACAAAACC
TGGACATTGTGCGTAAGGTGGATCTGACCATGGCAGTGGTACGCTCTCAA
GCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTACGTTGTCTCCTTTCC
CGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAGTGGTGTTGGGCGGCA
ACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCAGGGGATGGTCTCGCG
CACTACGATGTCCAAGTGTCCGGAGGCATATCTGAAGCTACGTTCCAGAT
TTCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGCCGGCTGAAATCGCCC
AAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGCCACACTGTGCCTTCC
CTGTACCCGACGACGACGCAGACCTCGACGTTCAAGATTGGTATATCGCA
CATCGAAAGCTTCACCAAGATAAATCCGTACGCAATGGCGGGTCAAGAAC
TTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGCGCCGAATCGCTCTCT
CCACTCGTGATTCACTACAAAAACAACGCCCCCTTCGCCAAGGCCCTGCA
GGCCATTCGAGAAATTGAGGTCTCACATTGGGGCAACGTGGCATTTGAGG
ACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTCAAAGGCGGCTTCTCA
CGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGCGTTTCAGGGGCTGGT
GGCGGTCTTACCTCCTGGCGCACGCAACATTTACTACCGCGACCAAATTG
GAAATATCTCCTCTTCTTTGATCCGATATCGGCCGCACGGGGTGGAGCTG
GACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATGGAAGAATCAGTTTTA
TCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGGCCTGTGAGGTGGAGG
GGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTTTCAGTGCCGTTCTCG
GAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGTGCTGCCAGAGTGGGC
GACGAACATCCAAGTTCAGTTGCCGTTTGACGTGGACGAGGAGTACCAAA
CCAGCCGGCTAACCTTTCTTGATACATCTATGAGTGGTGGCCGGCCTGTG
GTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCACATCCAGCCCATGAT
CATTACATATTCGTTCCCAAGGCGTGCCATGCTCTTGGAACCTTTGTATC
TGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGCATGCTATTTGCCCGG
GTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGGAAAGAAAAGCAAAAC
TCAGTAATTTTGTTAGGAAACGGAGATGAAGAAGGGGCAAAAAAAATATG
CTTGGGGCTTTTATGGTATGGAATGGAATAGAACAAAAATGGATGAGGCG
CTGACTGCAGACAAAGCCTAGTGGGGAAAAGTTGGGAAGTTTGCGGCGGT
GTATTCATACAAGGGCATGTCCTTTCTGCCAGCTGACGAACAGGCAAAAC
AACGTAGAAAATGCCATGGACATGTATTTCAATCAATCTACCTGCTCATT
TTTGTCGCGCTTGGCGTGGCGAAGGGAATGGTATTGCATCTTTCAATTCA
ACTTTTATAACAATTCAGCTTTAAATATCTAACTCTTTGAGCCATCACGT
ATGGATTGCTGCTCTCATGTCCAAGCTACCCCCACAAAGAAATTATATCG
GGGAGGGTGAGAAGTCGTGAGAAATGCGGCGGGGAACGTGCATTCGCGTT
CCTTGCTGACCAAAAGGATACCGTCTATACAGCCTGAAAAGGCCCATGTA
TGTGACTCCCCGGCTGGTGCTGGCGCAAAGCGCATGGGCACGTTCAACCG
CGTGCGAGTGGGAAAATCTGGCCCATTTTCTTGCAAAAACGAAGTTATAC
GTGTCATCA

protein sequence of jgi.p|Nanoce1779_2|592309

>mRNA_5375-protein ID=mRNA_5375-protein|Name=jgi.p|Nanoce1779_2|592309|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MQGMSQRPPFAAAGGPTTALLLFVLLQACAFFVQAQQNLDIVRKVDLTMA
VVRSQATIRVSELQGSYVVSFPAALAPKLSFLQVVLGGNQVLLPTRLPDA
GDGLAHYDVQVSGGISEATFQISATFVDALKPLPAEIAQGEDQLVQYFDS
HTVPSLYPTTTQTSTFKIGISHIESFTKINPYAMAGQELSFGPFPDVAGG
AESLSPLVIHYKNNAPFAKALQAIREIEVSHWGNVAFEDFLEVHHSGAVL
KGGFSRLDYQVGGSPSAFQGLVAVLPPGARNIYYRDQIGNISSSLIRYRP
HGVELDLQSRFPLFGGWKNQFYQGYSVPVEELLACEVEGDASQYALTVPF
SVPFSELWVEELTVKVVLPEWATNIQVQLPFDVDEEYQTSRLTFLDTSMS
GGRPVVVLKKRNVVAEHIQPMIITYSFPRRAMLLEPLYLVLAFFSFFLLC
MLFARVDLRVTPDSEKGKKSKTQ*

mRNA from alignment at scaffold_13:282668..284726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5375 ID=mRNA_5375|Name=jgi.p|Nanoce1779_2|592309|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp|location=Sequence derived from alignment at scaffold_13:282668..284726+ (Nannochloropsis oceanica)
AGACAAGGCACATTTTCCCACAGAGAGGATTAACAATGCAAGGGATGTCG
CAGCGGCCACCATTTGCTGCTGCTGGGGGACCCACGACAGCACTTCTCCT
GTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGCAGGCGCAACAAAACC
TGGACATTGTGCGTAAGGTGGATCTGACCATGGCAGTGGTACGCTCTCAA
GCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTACGTTGTCTCCTTTCC
CGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAGTGGTGTTGGGCGGCA
ACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCAGGGGATGGTCTCGCG
CACTACGATGTCCAAGTGTCCGGAGGCATATCTGAAGCTACGTTCCAGAT
TTCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGCCGGCTGAAATCGCCC
AAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGCCACACTGTGCCTTCC
CTGTACCCGACGACGACGCAGACCTCGACGTTCAAGATTGGTATATCGCA
CATCGAAAGCTTCACCAAGATAAATCCGTACGCAATGGCGGGTCAAGAAC
TTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGCGCCGAATCGCTCTCT
CCACTCGTGATTCACTACAAAAACAACGCCCCCTTCGCCAAGGCCCTGCA
GGCCATTCGAGAAATTGAGGTCTCACATTGGGGCAACGTGGCATTTGAGG
ACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTCAAAGGCGGCTTCTCA
CGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGCGTTTCAGGGGCTGGT
GGCGGTCTTACCTCCTGGCGCACGCAACATTTACTACCGCGACCAAATTG
GAAATATCTCCTCTTCTTTGATCCGATATCGGCCGCACGGGGTGGAGCTG
GACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATGGAAGAATCAGTTTTA
TCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGGCCTGTGAGGTGGAGG
GGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTTTCAGTGCCGTTCTCG
GAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGTGCTGCCAGAGTGGGC
GACGAACATCCAAGTTCAGTTGCCGTTTGACGTGGACGAGGAGTACCAAA
CCAGCCGGCTAACCTTTCTTGATACATCTATGAGTGGTGGCCGGCCTGTG
GTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCACATCCAGCCCATGAT
CATTACATATTCGTTCCCAAGGCGTGCCATGCTCTTGGAACCTTTGTATC
TGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGCATGCTATTTGCCCGG
GTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGGAAAGAAAAGCAAAAC
TCAGTAATTTTGTTAGGAAACGGAGATGAAGAAGGGGCAAAAAAAATATG
CTTGGGGCTTTTATGGTATGGAATGGAATAGAACAAAAATGGATGAGGCG
CTGACTGCAGACAAAGCCTAGTGGGGAAAAGTTGGGAAGTTTGCGGCGGT
GTATTCATACAAGGGCATGTCCTTTCTGCCAGCTGACGAACAGGCAAAAC
AACGTAGAAAATGCCATGGACATGTATTTCAATCAATCTACCTGCTCATT
TTTGTCGCGCTTGGCGTGGCGAAGGGAATGGTATTGCATCTTTCAATTCA
ACTTTTATAACAATTCAGCTTTAAATATCTAACTCTTTGAGCCATCACGT
ATGGATTGCTGCTCTCATGTCCAAGCTACCCCCACAAAGAAATTATATCG
GGGAGGGTGAGAAGTCGTGAGAAATGCGGCGGGGAACGTGCATTCGCGTT
CCTTGCTGACCAAAAGGATACCGTCTATACAGCCTGAAAAGGCCCATGTA
TGTGACTCCCCGGCTGGTGCTGGCGCAAAGCGCATGGGCACGTTCAACCG
CGTGCGAGTGGGAAAATCTGGCCCATTTTCTTGCAAAAACGAAGTTATAC
GTGTCATCA

Coding sequence (CDS) from alignment at scaffold_13:282668..284726+

>mRNA_5375 ID=mRNA_5375|Name=jgi.p|Nanoce1779_2|592309|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_13:282668..284726+ (Nannochloropsis oceanica)
ATGCAAGGGATGTCGCAGCGGCCACCATTTGCTGCTGCTGGGGGACCCAC
GACAGCACTTCTCCTGTTTGTTCTTCTCCAGGCATGTGCCTTCTTTGTGC
AGGCGCAACAAAACCTGGACATTGTGCGTAAGGTGGATCTGACCATGGCA
GTGGTACGCTCTCAAGCGACCATCCGGGTCAGCGAGTTGCAAGGGAGCTA
CGTTGTCTCCTTTCCCGCGGCTCTTGCCCCGAAGCTCTCCTTCCTCCAAG
TGGTGTTGGGCGGCAACCAAGTCCTTCTCCCGACCCGCCTGCCCGATGCA
GGGGATGGTCTCGCGCACTACGATGTCCAAGTGTCCGGAGGCATATCTGA
AGCTACGTTCCAGATTTCTGCCACCTTTGTGGATGCTCTGAAGCCCCTGC
CGGCTGAAATCGCCCAAGGCGAGGACCAGCTTGTCCAGTACTTCGACAGC
CACACTGTGCCTTCCCTGTACCCGACGACGACGCAGACCTCGACGTTCAA
GATTGGTATATCGCACATCGAAAGCTTCACCAAGATAAATCCGTACGCAA
TGGCGGGTCAAGAACTTTCATTTGGGCCTTTCCCGGACGTGGCAGGCGGC
GCCGAATCGCTCTCTCCACTCGTGATTCACTACAAAAACAACGCCCCCTT
CGCCAAGGCCCTGCAGGCCATTCGAGAAATTGAGGTCTCACATTGGGGCA
ACGTGGCATTTGAGGACTTCCTTGAAGTCCACCACTCGGGCGCCGTCCTC
AAAGGCGGCTTCTCACGTTTGGATTATCAAGTGGGAGGTTCCCCCTCTGC
GTTTCAGGGGCTGGTGGCGGTCTTACCTCCTGGCGCACGCAACATTTACT
ACCGCGACCAAATTGGAAATATCTCCTCTTCTTTGATCCGATATCGGCCG
CACGGGGTGGAGCTGGACTTGCAGTCGCGCTTCCCGCTGTTTGGTGGATG
GAAGAATCAGTTTTATCAAGGTTACAGCGTGCCCGTAGAGGAGCTGCTGG
CCTGTGAGGTGGAGGGGGACGCAAGCCAGTATGCGTTGACTGTGCCTTTT
TCAGTGCCGTTCTCGGAGCTATGGGTCGAGGAGTTGACGGTAAAGGTGGT
GCTGCCAGAGTGGGCGACGAACATCCAAGTTCAGTTGCCGTTTGACGTGG
ACGAGGAGTACCAAACCAGCCGGCTAACCTTTCTTGATACATCTATGAGT
GGTGGCCGGCCTGTGGTGGTTCTCAAGAAGCGAAACGTGGTGGCGGAGCA
CATCCAGCCCATGATCATTACATATTCGTTCCCAAGGCGTGCCATGCTCT
TGGAACCTTTGTATCTGGTGCTAGCCTTCTTTTCCTTTTTCCTCCTCTGC
ATGCTATTTGCCCGGGTCGATCTCCGCGTCACGCCCGACAGCGAGAAGGG
AAAGAAAAGCAAAACTCAGTAA

Synonyms

Publications