jgi.p|Nanoce1779_2|592294, mRNA_5370 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592294
Unique Name	mRNA_5370
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2441
Alignment location	scaffold_13:264300..266740 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592380
Track	FilteredModels2
ProteinId	592294

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:264300..266740 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592294	gene_5370	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592294	mRNA_5370-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5370	CDS_5370	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:264300..266740-
coding sequence from alignment at scaffold_13:264300..266740-

mRNA sequence

>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Nanoce1779_2|592294|organism=Nannochloropsis oceanica|type=mRNA|length=2441bp
CAGAGCGCAGCCATGGTCAAGAGGATGTCGATAGCTCTTGCCTTGCTGCT
GCTGCAAGCCAGCTCTGTCAATGCATTTCTCTGCCTCCCCCTTCCCGGCG
CCCAGCAGCGCCACGTACTATCCCAGCTCACGGCCGCGATTGCAACCCGA
ACGGGTAAGTCAAATAAGGCGGCAGCAGCTGTCACCTACACGCCCACGCC
CAACTATGGCGATACTCAAGGTGCCGAACTGTATTTGGATGGCGTCGCGG
TTGCCGCGGGCGCCACATCCTTGGTAAGCGGTGTTTCCTGGAAGATCAAC
AAGGGGGAGCGCGTTGGTATCGTGGGTGGGAACGGCGCGGGCAAGTCGAC
GATGCTCAGTGTCATTGCCGGGTACAACATGCCGGAGGAGGGGACAGTTA
CAGTGCACCCGCGGGCTACGCTGGGTTACCTGGTGCAGACGGCCGTCTCT
GGCTCCACACGGACGCTGAAAGAGGAGGCCATGTCACAAATGACGGCTTT
TCATGACGCCGAGGCCGCAGTGGCTCGGGCTGAGGCCCGGGCGAATGTTG
ACCCCAGTGATTCCAATCTCCTAGCCTTAGAAAGGGCCCAGGCTTTATGG
GTTGAGGCTGGAGGGGAGGATGTGACACAACGCGTCGAAAACATTTTGAG
TGGGTTGGGATTTCAGCGCACGGACTACACGCGGCCTTGCACGGACTTCA
GCGGCGGATGGCAGATGCGCATTGCCCTGGCCCGGCTGTTGCTAGGGGAA
CCTTCACTTTTGCTCCTGGATGAGCCCACGAACCATTTGGACTCGGCCGC
CAAGGACTGGCTAATGCACTTCTTGACTTCTTACACGGGCACCGTGCTCC
TGGTCAGCCACGAAGAGGAGCTTCTGCGGGCATTTCAATGCACGACGGTG
GCCGAGCTCCGCTTCCAGGCCTTGGAGTTGTACCGCTGTGGATACGATCA
ATTTCTGGAGCAGCGGAAGGAGCGTGCCGAGGCCCTCGAGGCTGCGGCCG
CCCGGCAGGCGAAAGAGCGGGCACGTGTCCAGGGGTTTATCGACCGGTTT
GGGGCGAAAGCGACCATGGCATCGGCCGCTAACTCGAGGAAGTTGAAATT
GGAGAAGATGAGCATCATTGAGGGCCCCCAGGCTGCTGTCAAGCGGCCTC
ATCTCCGTTTCCCCGTCCCGCCCAAGGTGATGCCCGAGCTTCTGAAATTG
CGGGATGCCAGCTTTGGGTACCCGCCCGCCGCGCCTTTGGTGGAGAAAGT
GGATTTCACGCTCACCCGGGGCACGCGCATGGTTTTGCTGGGGCCGAACG
GCTGCGGCAAGTCCACGGTTCTTAAAGCCTTGACGGGCACCTTGCCTCCT
CTGGAGACTGGAAGCAGTGACAGGATCCTGGGGGAGGGTCTGGAGATGGG
CGTTTTTACCCAAGATCTGGCGCAGGACTTGCCTCAAGATCAGGTCGCGG
TGGACTATGTCTTGGCCACGGTGAGGCAGAAGGACATGAGCATCACGGAC
CAGCAGGCCCGGGGGGCGTTGGGTGCCTTGGGACTGATGGGGGAGAAGGC
GATGCGGCCCATCTCGGCGCTGTCTGGCGGGGAGAAAGCCCGCGTGGCTC
TAAGTGTGTTTGCCCTTCTCCCACACAATCTATTGGTGTTGGACGAACCC
AGTAACCACTTAGATATTGGCACAACCGAGACGCTGAGTGAGGCTCTTGC
TGAATTCAGAGGTACAATGGTGGTTATAAGCCACAACAAGGCCTTCGTGG
AGAAGCTCAAGGTTACCCACGTCGGGCTGATCAGAAACCGGCGTCTCATT
GTGGAGGAGCGCATGCTCCGCCCCAGTGACTGGGCATTCGATACACAGTC
TGGAGGCAGCGGGGGGGCTTCCAAGGCTATTGTGAAGAGTTGTAGTGGCA
AGGGCGGCAGCAAAGCCAATGATGGCAAGCAAGATGCAGCTGTTGCAGAC
GGTGGGAAGGCGAATTATAAGGACCAACGGGCGCGCTTTAAGAAGATGTC
AGCCGCGCCCAAGCGCATTGCGAAGCTGCAGGTGATTATCGAGGAGAAGG
AGCAGAAGGTGGAGGAGTATGGGAAAAAAATGTACCACGCGGGTAGCGAC
GTTGCCAAGGTTATTGAATTTTCTGAGCGAAAGGAAGCATTGGCCGTTGA
AGTAGAGGCACTCTACGCCGAGTGGGACGAGCTGGAGGCCATGCTCGCGG
AAAAGAATGGGCAATAAAGCACCGAGAAAGGAAAGGGGGGGTAGGGGGCA
TGCTGGCAGAAAAGAATGGGCAATCAAGCACCGAGAGGGGAAATAGAAAT
TGTCGCCCGAAGAGGGTAGGAAATGCAGACAAAGTGTAAGAAAGTGGCAG
GCATCGCAATGAATGGAATGTAAATGTAATGGTTTGATTTGAGAAACCGC
AGAGTATGCACCTGGAAAAAAAATAACCAAATTTTGTCGTG

protein sequence of jgi.p|Nanoce1779_2|592294

>mRNA_5370-protein ID=mRNA_5370-protein|Name=jgi.p|Nanoce1779_2|592294|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MVKRMSIALALLLLQASSVNAFLCLPLPGAQQRHVLSQLTAAIATRTGKS
NKAAAAVTYTPTPNYGDTQGAELYLDGVAVAAGATSLVSGVSWKINKGER
VGIVGGNGAGKSTMLSVIAGYNMPEEGTVTVHPRATLGYLVQTAVSGSTR
TLKEEAMSQMTAFHDAEAAVARAEARANVDPSDSNLLALERAQALWVEAG
GEDVTQRVENILSGLGFQRTDYTRPCTDFSGGWQMRIALARLLLGEPSLL
LLDEPTNHLDSAAKDWLMHFLTSYTGTVLLVSHEEELLRAFQCTTVAELR
FQALELYRCGYDQFLEQRKERAEALEAAAARQAKERARVQGFIDRFGAKA
TMASAANSRKLKLEKMSIIEGPQAAVKRPHLRFPVPPKVMPELLKLRDAS
FGYPPAAPLVEKVDFTLTRGTRMVLLGPNGCGKSTVLKALTGTLPPLETG
SSDRILGEGLEMGVFTQDLAQDLPQDQVAVDYVLATVRQKDMSITDQQAR
GALGALGLMGEKAMRPISALSGGEKARVALSVFALLPHNLLVLDEPSNHL
DIGTTETLSEALAEFRGTMVVISHNKAFVEKLKVTHVGLIRNRRLIVEER
MLRPSDWAFDTQSGGSGGASKAIVKSCSGKGGSKANDGKQDAAVADGGKA
NYKDQRARFKKMSAAPKRIAKLQVIIEEKEQKVEEYGKKMYHAGSDVAKV
IEFSERKEALAVEVEALYAEWDELEAMLAEKNGQ*

mRNA from alignment at scaffold_13:264300..266740-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Nanoce1779_2|592294|organism=Nannochloropsis oceanica|type=mRNA|length=2441bp|location=Sequence derived from alignment at scaffold_13:264300..266740- (Nannochloropsis oceanica)
CAGAGCGCAGCCATGGTCAAGAGGATGTCGATAGCTCTTGCCTTGCTGCT
GCTGCAAGCCAGCTCTGTCAATGCATTTCTCTGCCTCCCCCTTCCCGGCG
CCCAGCAGCGCCACGTACTATCCCAGCTCACGGCCGCGATTGCAACCCGA
ACGGGTAAGTCAAATAAGGCGGCAGCAGCTGTCACCTACACGCCCACGCC
CAACTATGGCGATACTCAAGGTGCCGAACTGTATTTGGATGGCGTCGCGG
TTGCCGCGGGCGCCACATCCTTGGTAAGCGGTGTTTCCTGGAAGATCAAC
AAGGGGGAGCGCGTTGGTATCGTGGGTGGGAACGGCGCGGGCAAGTCGAC
GATGCTCAGTGTCATTGCCGGGTACAACATGCCGGAGGAGGGGACAGTTA
CAGTGCACCCGCGGGCTACGCTGGGTTACCTGGTGCAGACGGCCGTCTCT
GGCTCCACACGGACGCTGAAAGAGGAGGCCATGTCACAAATGACGGCTTT
TCATGACGCCGAGGCCGCAGTGGCTCGGGCTGAGGCCCGGGCGAATGTTG
ACCCCAGTGATTCCAATCTCCTAGCCTTAGAAAGGGCCCAGGCTTTATGG
GTTGAGGCTGGAGGGGAGGATGTGACACAACGCGTCGAAAACATTTTGAG
TGGGTTGGGATTTCAGCGCACGGACTACACGCGGCCTTGCACGGACTTCA
GCGGCGGATGGCAGATGCGCATTGCCCTGGCCCGGCTGTTGCTAGGGGAA
CCTTCACTTTTGCTCCTGGATGAGCCCACGAACCATTTGGACTCGGCCGC
CAAGGACTGGCTAATGCACTTCTTGACTTCTTACACGGGCACCGTGCTCC
TGGTCAGCCACGAAGAGGAGCTTCTGCGGGCATTTCAATGCACGACGGTG
GCCGAGCTCCGCTTCCAGGCCTTGGAGTTGTACCGCTGTGGATACGATCA
ATTTCTGGAGCAGCGGAAGGAGCGTGCCGAGGCCCTCGAGGCTGCGGCCG
CCCGGCAGGCGAAAGAGCGGGCACGTGTCCAGGGGTTTATCGACCGGTTT
GGGGCGAAAGCGACCATGGCATCGGCCGCTAACTCGAGGAAGTTGAAATT
GGAGAAGATGAGCATCATTGAGGGCCCCCAGGCTGCTGTCAAGCGGCCTC
ATCTCCGTTTCCCCGTCCCGCCCAAGGTGATGCCCGAGCTTCTGAAATTG
CGGGATGCCAGCTTTGGGTACCCGCCCGCCGCGCCTTTGGTGGAGAAAGT
GGATTTCACGCTCACCCGGGGCACGCGCATGGTTTTGCTGGGGCCGAACG
GCTGCGGCAAGTCCACGGTTCTTAAAGCCTTGACGGGCACCTTGCCTCCT
CTGGAGACTGGAAGCAGTGACAGGATCCTGGGGGAGGGTCTGGAGATGGG
CGTTTTTACCCAAGATCTGGCGCAGGACTTGCCTCAAGATCAGGTCGCGG
TGGACTATGTCTTGGCCACGGTGAGGCAGAAGGACATGAGCATCACGGAC
CAGCAGGCCCGGGGGGCGTTGGGTGCCTTGGGACTGATGGGGGAGAAGGC
GATGCGGCCCATCTCGGCGCTGTCTGGCGGGGAGAAAGCCCGCGTGGCTC
TAAGTGTGTTTGCCCTTCTCCCACACAATCTATTGGTGTTGGACGAACCC
AGTAACCACTTAGATATTGGCACAACCGAGACGCTGAGTGAGGCTCTTGC
TGAATTCAGAGGTACAATGGTGGTTATAAGCCACAACAAGGCCTTCGTGG
AGAAGCTCAAGGTTACCCACGTCGGGCTGATCAGAAACCGGCGTCTCATT
GTGGAGGAGCGCATGCTCCGCCCCAGTGACTGGGCATTCGATACACAGTC
TGGAGGCAGCGGGGGGGCTTCCAAGGCTATTGTGAAGAGTTGTAGTGGCA
AGGGCGGCAGCAAAGCCAATGATGGCAAGCAAGATGCAGCTGTTGCAGAC
GGTGGGAAGGCGAATTATAAGGACCAACGGGCGCGCTTTAAGAAGATGTC
AGCCGCGCCCAAGCGCATTGCGAAGCTGCAGGTGATTATCGAGGAGAAGG
AGCAGAAGGTGGAGGAGTATGGGAAAAAAATGTACCACGCGGGTAGCGAC
GTTGCCAAGGTTATTGAATTTTCTGAGCGAAAGGAAGCATTGGCCGTTGA
AGTAGAGGCACTCTACGCCGAGTGGGACGAGCTGGAGGCCATGCTCGCGG
AAAAGAATGGGCAATAAAGCACCGAGAAAGGAAAGGGGGGGTAGGGGGCA
TGCTGGCAGAAAAGAATGGGCAATCAAGCACCGAGAGGGGAAATAGAAAT
TGTCGCCCGAAGAGGGTAGGAAATGCAGACAAAGTGTAAGAAAGTGGCAG
GCATCGCAATGAATGGAATGTAAATGTAATGGTTTGATTTGAGAAACCGC
AGAGTATGCACCTGGAAAAAAAATAACCAAATTTTGTCGTG

Coding sequence (CDS) from alignment at scaffold_13:264300..266740-

>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Nanoce1779_2|592294|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_13:264300..266740- (Nannochloropsis oceanica)
ATGGTCAAGAGGATGTCGATAGCTCTTGCCTTGCTGCTGCTGCAAGCCAG
CTCTGTCAATGCATTTCTCTGCCTCCCCCTTCCCGGCGCCCAGCAGCGCC
ACGTACTATCCCAGCTCACGGCCGCGATTGCAACCCGAACGGGTAAGTCA
AATAAGGCGGCAGCAGCTGTCACCTACACGCCCACGCCCAACTATGGCGA
TACTCAAGGTGCCGAACTGTATTTGGATGGCGTCGCGGTTGCCGCGGGCG
CCACATCCTTGGTAAGCGGTGTTTCCTGGAAGATCAACAAGGGGGAGCGC
GTTGGTATCGTGGGTGGGAACGGCGCGGGCAAGTCGACGATGCTCAGTGT
CATTGCCGGGTACAACATGCCGGAGGAGGGGACAGTTACAGTGCACCCGC
GGGCTACGCTGGGTTACCTGGTGCAGACGGCCGTCTCTGGCTCCACACGG
ACGCTGAAAGAGGAGGCCATGTCACAAATGACGGCTTTTCATGACGCCGA
GGCCGCAGTGGCTCGGGCTGAGGCCCGGGCGAATGTTGACCCCAGTGATT
CCAATCTCCTAGCCTTAGAAAGGGCCCAGGCTTTATGGGTTGAGGCTGGA
GGGGAGGATGTGACACAACGCGTCGAAAACATTTTGAGTGGGTTGGGATT
TCAGCGCACGGACTACACGCGGCCTTGCACGGACTTCAGCGGCGGATGGC
AGATGCGCATTGCCCTGGCCCGGCTGTTGCTAGGGGAACCTTCACTTTTG
CTCCTGGATGAGCCCACGAACCATTTGGACTCGGCCGCCAAGGACTGGCT
AATGCACTTCTTGACTTCTTACACGGGCACCGTGCTCCTGGTCAGCCACG
AAGAGGAGCTTCTGCGGGCATTTCAATGCACGACGGTGGCCGAGCTCCGC
TTCCAGGCCTTGGAGTTGTACCGCTGTGGATACGATCAATTTCTGGAGCA
GCGGAAGGAGCGTGCCGAGGCCCTCGAGGCTGCGGCCGCCCGGCAGGCGA
AAGAGCGGGCACGTGTCCAGGGGTTTATCGACCGGTTTGGGGCGAAAGCG
ACCATGGCATCGGCCGCTAACTCGAGGAAGTTGAAATTGGAGAAGATGAG
CATCATTGAGGGCCCCCAGGCTGCTGTCAAGCGGCCTCATCTCCGTTTCC
CCGTCCCGCCCAAGGTGATGCCCGAGCTTCTGAAATTGCGGGATGCCAGC
TTTGGGTACCCGCCCGCCGCGCCTTTGGTGGAGAAAGTGGATTTCACGCT
CACCCGGGGCACGCGCATGGTTTTGCTGGGGCCGAACGGCTGCGGCAAGT
CCACGGTTCTTAAAGCCTTGACGGGCACCTTGCCTCCTCTGGAGACTGGA
AGCAGTGACAGGATCCTGGGGGAGGGTCTGGAGATGGGCGTTTTTACCCA
AGATCTGGCGCAGGACTTGCCTCAAGATCAGGTCGCGGTGGACTATGTCT
TGGCCACGGTGAGGCAGAAGGACATGAGCATCACGGACCAGCAGGCCCGG
GGGGCGTTGGGTGCCTTGGGACTGATGGGGGAGAAGGCGATGCGGCCCAT
CTCGGCGCTGTCTGGCGGGGAGAAAGCCCGCGTGGCTCTAAGTGTGTTTG
CCCTTCTCCCACACAATCTATTGGTGTTGGACGAACCCAGTAACCACTTA
GATATTGGCACAACCGAGACGCTGAGTGAGGCTCTTGCTGAATTCAGAGG
TACAATGGTGGTTATAAGCCACAACAAGGCCTTCGTGGAGAAGCTCAAGG
TTACCCACGTCGGGCTGATCAGAAACCGGCGTCTCATTGTGGAGGAGCGC
ATGCTCCGCCCCAGTGACTGGGCATTCGATACACAGTCTGGAGGCAGCGG
GGGGGCTTCCAAGGCTATTGTGAAGAGTTGTAGTGGCAAGGGCGGCAGCA
AAGCCAATGATGGCAAGCAAGATGCAGCTGTTGCAGACGGTGGGAAGGCG
AATTATAAGGACCAACGGGCGCGCTTTAAGAAGATGTCAGCCGCGCCCAA
GCGCATTGCGAAGCTGCAGGTGATTATCGAGGAGAAGGAGCAGAAGGTGG
AGGAGTATGGGAAAAAAATGTACCACGCGGGTAGCGACGTTGCCAAGGTT
ATTGAATTTTCTGAGCGAAAGGAAGCATTGGCCGTTGAAGTAGAGGCACT
CTACGCCGAGTGGGACGAGCTGGAGGCCATGCTCGCGGAAAAGAATGGGC
AATAA

Synonyms

Publications