jgi.p|Nanoce1779_2|523513, mRNA_537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523513
Unique NamemRNA_537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length801
Alignment locationscaffold_3:1299946..1301142 -

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Properties
Property NameValue
TranscriptId523599
TrackFilteredModels2
ProteinId523513
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1299946..1301142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523513gene_537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523513mRNA_537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_537CDS_537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_537 ID=mRNA_537|Name=jgi.p|Nanoce1779_2|523513|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
ATGGCCTCCTCGTCGTCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAG
AAGTAGCGACGAGGGAACTTTTCCCTATCGGCTCATCGACTCCCACCACC
ACGTCTGGACGGATGGTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGT
GCTCCACCAGGTCTGCAAGACAGCGGGACGGCGGAGAAATTTCTGACACT
GGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCCAATCCTTT
ACCTGTACGATCATTCATACGTTCGCTCGGTTCTACAGGCCCACCCTGGC
AAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGCAGC
AGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGAT
TCAATCCCTATATATGGCCAGCTGGGGAAAAGATGGACAATGACGTTGGC
AGGGCCATGTTCGCCGAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGAT
GCTCTTCAAAGGGCTGCACCTCCACCTCCCGGAAGTCAACGCCCTCCTCT
CCCTCCCCCGCTCCCTCCATCCCCCCCCCCCTGTGATTCTTGATCATTGG
GGTTTTTTCCATCAAGATGGAAGGGACGTACCAGAGGCATGGGATGCCCT
GCTCTCCCTCGCGCAGTACTCGCACGTGACGGTGAAAATTTCGGCCTTTT
TCCGGGTATCGTCGCAGCCGTGGCCTTTCCATGATTTGGCGCCACGATTG
GAGGAGCTTGTGAGGGTATTTGGAAGTGAGAGGCTGATGTGGGGGAGGTG
A
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protein sequence of jgi.p|Nanoce1779_2|523513

>mRNA_537-protein ID=mRNA_537-protein|Name=jgi.p|Nanoce1779_2|523513|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MASSSSSSFSTPAPSSRSSDEGTFPYRLIDSHHHVWTDGEEPFPYANGQS
APPGLQDSGTAEKFLTLAAAAGVERSLIVQPILYLYDHSYVRSVLQAHPG
KFEGMLNANPTLSPEAAAAAIVRLHGEGFKSIRFNPYIWPAGEKMDNDVG
RAMFAEAGRLGMPVGLMLFKGLHLHLPEVNALLSLPRSLHPPPPVILDHW
GFFHQDGRDVPEAWDALLSLAQYSHVTVKISAFFRVSSQPWPFHDLAPRL
EELVRVFGSERLMWGR*
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mRNA from alignment at scaffold_3:1299946..1301142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_537 ID=mRNA_537|Name=jgi.p|Nanoce1779_2|523513|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp|location=Sequence derived from alignment at scaffold_3:1299946..1301142- (Nannochloropsis oceanica)
ATGGCCTCCTCGTCGTCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAG
AAGTAGCGACGAGGGAACTTTTCCCTATCGGCTCATCGACTCCCACCACC
ACGTCTGGACGGATGGTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGT
GCTCCACCAGGTCTGCAAGACAGCGGGTACGTGAGAAACACAGAGACGCT
CTAATGCGCTCCCCCATCATTTTTTTCATTTCTTCTCACATCTTCGCTTT
GCACACAACACCTGACGACAGGACGGCGGAGAAATTTCTGACACTGGCAG
CCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCCAATCCTTTACCTG
TACGATCATTCATGTACGTACTCGATCACCCTCCCTCTTTCCCTCCCTCC
CTCCCTCCCTCTCCCTCTCCTCCCTTTATCCCCTCCTCTCCCTCTGGCCC
ACATTTCTTCACCTCCTCCACCTTTATCTCTTTCTTCTATCATTTAGACG
TTCGCTCGGTTCTACAGGCCCACCCTGGCAAGTTTGAAGGTATGCTCAAC
GCCAACCCTACCCTCTCTCCCGAGGCAGCAGCAGCAGCCATCGTGCGGCT
GCACGGGGAAGGGTTTAAGTCTATTCGATTCAATCCCTATATATGGCCAG
CTGGGGAAAAGGTAGGCGCATGGAAAGGAAGGAAGGAAGCAAAGAAGGAG
GGAGGGAGGGAGGAAGGGAGTGACGAATGCGAGATGCTAATTCCTAATTT
TCACTGTCTCCTCTTTTCCTCTACCTCCCCGCCTACCTCGCTGCCTCCGT
TCCTCCTTTCCTCCTTCCCTTTTTTGAGATGGACAATGACGTTGGCAGGG
CCATGTTCGCCGAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGATGCTC
TTCAAAGGGCTGCACCTCCACCTCCCGGAAGTCAACGCCCTCCTCTCCCT
CCCCCGCTCCCTCCATCCCCCCCCCCCTGTGATTCTTGATCATTGGGGTT
TTTTCCATCAAGATGGAAGGGACGTACCAGAGGCATGGGATGCCCTGCTC
TCCCTCGCGCAGTACTCGCACGTGACGGTGAAAATTTCGGCCTTTTTCCG
GGTATCGTCGCAGCCGTGGCCTTTCCATGATTTGGCGCCACGATTGGAGG
AGCTTGTGAGGGTATTTGGAAGTGAGAGGCTGATGTGGGGGAGGTGA
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Coding sequence (CDS) from alignment at scaffold_3:1299946..1301142-

>mRNA_537 ID=mRNA_537|Name=jgi.p|Nanoce1779_2|523513|organism=Nannochloropsis oceanica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_3:1299946..1301142- (Nannochloropsis oceanica)
ATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAGCTGGTCGCCTTGG
GATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCACCTCCACCTCCCGG
AAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCATCCCCCCCCCCCT
GTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGGAAGGGACGTACC
AGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACTCGCACGTGACGG
TGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCGTGGCCTTTCCAT
GATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATTTGGAAGTGAGAG
GCTGATGTGGGGGAGGTGAACGTTCGCTCGGTTCTACAGGCCCACCCTGG
CAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGCAG
CAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGA
TTCAATCCCTATATATGGCCAGCTGGGGAAAAGGACGGCGGAGAAATTTC
TGACACTGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCCA
ATCCTTTACCTGTACGATCATTCATATGGCCTCCTCGTCGTCGTCCTCCT
TCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGGAACTTTTCCC
TATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATGGTGAGGAACC
TTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTGCAAGACAGCG
GATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAGCTGGTCGCCTTG
GGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCACCTCCACCTCCCG
GAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCATCCCCCCCCCCC
TGTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGGAAGGGACGTAC
CAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACTCGCACGTGACG
GTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCGTGGCCTTTCCA
TGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATTTGGAAGTGAGA
GGCTGATGTGGGGGAGGTGAACGTTCGCTCGGTTCTACAGGCCCACCCTG
GCAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGCA
GCAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTCG
ATTCAATCCCTATATATGGCCAGCTGGGGAAAAGGACGGCGGAGAAATTT
CTGACACTGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCC
AATCCTTTACCTGTACGATCATTCATATGGCCTCCTCGTCGTCGTCCTCC
TTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGGAACTTTTCC
CTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATGGTGAGGAAC
CTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTGCAAGACAGC
GGATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAGCTGGTCGCCTT
GGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCACCTCCACCTCCC
GGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCATCCCCCCCCCC
CTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGGAAGGGACGTA
CCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACTCGCACGTGAC
GGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCGTGGCCTTTCC
ATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATTTGGAAGTGAG
AGGCTGATGTGGGGGAGGTGAACGTTCGCTCGGTTCTACAGGCCCACCCT
GGCAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGC
AGCAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTC
GATTCAATCCCTATATATGGCCAGCTGGGGAAAAGGACGGCGGAGAAATT
TCTGACACTGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGC
CAATCCTTTACCTGTACGATCATTCATATGGCCTCCTCGTCGTCGTCCTC
CTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGGAACTTTTC
CCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATGGTGAGGAA
CCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTGCAAGACAG
CGGATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAGCTGGTCGCCT
TGGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCACCTCCACCTCC
CGGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCATCCCCCCCCC
CCTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGGAAGGGACGT
ACCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACTCGCACGTGA
CGGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCGTGGCCTTTC
CATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATTTGGAAGTGA
GAGGCTGATGTGGGGGAGGTGAACGTTCGCTCGGTTCTACAGGCCCACCC
TGGCAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGG
CAGCAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATT
CGATTCAATCCCTATATATGGCCAGCTGGGGAAAAGGACGGCGGAGAAAT
TTCTGACACTGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAG
CCAATCCTTTACCTGTACGATCATTCATATGGCCTCCTCGTCGTCGTCCT
CCTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGGAACTTTT
CCCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATGGTGAGGA
ACCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTGCAAGACA
GCGG
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Synonyms
Publications