jgi.p|Nanoce1779_2|556420, mRNA_5369 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556420
Unique NamemRNA_5369
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1127
Alignment locationscaffold_13:261643..263027 -

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Properties
Property NameValue
TranscriptId556506
TrackFilteredModels2
ProteinId556420
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:261643..263027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556420gene_5369Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556420mRNA_5369-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5369CDS_5369Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5369 ID=mRNA_5369|Name=jgi.p|Nanoce1779_2|556420|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
ATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGTACGAACCC
ACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAACAGCCTTT
ATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTGTAGACAAG
GCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATGCAGAAGCC
CACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGA
AGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGTACTTGCGC
GTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTA
CCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCGATTTCGGG
GCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAGAGGAGCTG
CTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCG
GCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGG
AGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGGTCGGACTGCC
AGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCCAAGACCGCCG
CCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCATCATCATCAT
CATCATCATCATCATCATCATCATCATCATCGTCATCATCATCATCATCA
TCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCTCCTCTTCCTC
CTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCTCGAAAAGACA
GCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAAGAGCAAGAAG
GTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGGGGGGGTCACC
GGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGTGGAGTTCAGG
GAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAGGACGAAGTTG
GGTCTTAAGCCTTTGCGAGAGTAAGACCAGAAGAAGTCAAAGCAAAGGAG
AAAGGAAAACATGCACTGAAGGTTGCC
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protein sequence of jgi.p|Nanoce1779_2|556420

>mRNA_5369-protein ID=mRNA_5369-protein|Name=jgi.p|Nanoce1779_2|556420|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MANRTDPTVTTVHGTNPQFLVEKILRQKIYNSLYWKEHCFGLTAETLVDK
AVGLSAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLR
VLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEYIEEL
LTGDYCCDVALPHLPKRHLLEDQKLLTPRVSALEDEDLDPPEDGNEGRTA
SRTPKRRRRRSMSQDRRRRNQSPSPSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSPSSFSSSSSSSSFSPTNPSPSRKDSSDSEYERKTKKIKSKK
VRVIKGLKLHKIVGGSPAAATAAAAERGGSGVQGGGETSVGEWNDIRTKL
GLKPLRE*
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mRNA from alignment at scaffold_13:261643..263027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5369 ID=mRNA_5369|Name=jgi.p|Nanoce1779_2|556420|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_13:261643..263027- (Nannochloropsis oceanica)
ATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGTACGAACCC
ACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAACAGCCTTT
ATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTGTAGACAAG
GCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATGCAGAAGCC
CACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGA
AGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGTACTTGCGC
GTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTA
CCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCGATTTCGGG
GCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAGAGGAGCTG
CTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCG
GCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGG
AGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGGGTGGAAGGAG
AAGGAGGATGAGGAGATGCGGAAAGCACGGAATGGTAAGAGCAGTCGACC
CCGGGGTGGCGATGAGGAGGAGCAGGAGGAGGATAAAGACGAGCAAGGGC
GGGAGAAATGGTTCAAGGATAGCCATCTGCACCGTCGAGGCAACCGCTTC
GCCTCGCCTTCCTCGCGTCATGAACGATGGCGGGACAGGCGGGGGAGGGA
CGAGGTGGAGGAGGATAGCATGGAAAATCGCCGCCGTCGAAACCGAAGTC
GGACTGCCAGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCCAA
GACCGCCGCCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCATCGTCATCATCAT
CATCATCATCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCTCC
TCTTCCTCCTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCTCG
AAAAGACAGCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAAGA
GCAAGAAGGTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGGGG
GGGTCACCGGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGTGG
AGTTCAGGGAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAGGA
CGAAGTTGGGTCTTAAGCCTTTGCGAGAGTAAGACCAGAAGAAGTCAAAG
CAAAGGAGAAAGGAAAACATGCACTGAAGGTTGCC
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Coding sequence (CDS) from alignment at scaffold_13:261643..263027-

>mRNA_5369 ID=mRNA_5369|Name=jgi.p|Nanoce1779_2|556420|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_13:261643..263027- (Nannochloropsis oceanica)
TCGGACTGCCAGTCGCACGCCTAAGCGCCGGCGTCGACGCTCCATGAGCC
AAGACCGCCGCCGTCGCAATCAATCGCCATCTCCATCATCATCATCATCA
TCATCATCATCATCATCATCATCATCATCATCATCATCATCGTCATCATC
ATCATCATCATCATCATCATCATCATCATCATCATCCCCCTCCTCCTTCT
CCTCTTCCTCCTCCTCCTCCTCTTTCTCCCCGACGAATCCCTCGCCTTCT
CGAAAAGACAGCAGCGACAGCGAATACGAGAGAAAGACCAAGAAAATCAA
GAGCAAGAAGGTGCGTGTGATCAAGGGGCTGAAGCTTCACAAGATCGTGG
GGGGGTCACCGGCGGCGGCGACGGCAGCGGCTGCCGAGAGGGGCGGTAGT
GGAGTTCAGGGAGGAGGGGAAACATCCGTGGGAGAATGGAATGATATTAG
GACGAAGTTGGGTCTTAAGCCTTTGCGAGAGTAAATGGCAAACCGGACAG
ATCCCACGGTGACGACTGTACACGGTACGAACCCACAGTTTTTGGTGGAA
AAGATTTTGCGACAAAAAATATACAACAGCCTTTATTGGAAGGAGCACTG
CTTTGGGCTGACAGCCGAGACGCTTGTAGACAAGGCCGTGGGGTTGAGTG
CCTATGGCGGCCAGTACGGGGGTATGCAGAAGCCCACAAAGTTCATGTGC
TTGGTCCTGAAGATGCTGCAGCTCCAGCCCGAGAAGGAGATCGTTGTGGA
GTTCATCAAGAACGAGGACTACAAGTACTTGCGCGTTCTGGGTGCATTTT
ACCTTCGCCTGGTGGGCAAGCCGCTGGATATCTACCAGTATCTGGAGCCC
CTCTACAACGACTACCGCAAGCTTCGATTTCGGGGCGTAGCGGGCTGGGC
ACTCAAGCACATGGACGAGTACATAGAGGAGCTGCTGACGGGCGACTATT
GCTGTGACGTAGCGTTGCCCCACCTGCCTAAGCGGCACCTGCTCGAGGAT
CAGAAGCTCCTTACCCCCCGTGTCAGCGCATTGGAGGACGAGGACCTGGA
TCCCCCGGAGGACGGAAACGAGGGTCGGACTGCCAGTCGCACGCCTAAGC
GCCGGCGTCGACGCTCCATGAGCCAAGACCGCCGCCGTCGCAATCAATCG
CCATCTCCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCATCATCGTCATCATCATCATCATCATCATCATCATCATCAT
CATCATCATCCCCCTCCTCCTTCTCCTCTTCCTCCTCCTCCTCCTCTTTC
TCCCCGACGAATCCCTCGCCTTCTCGAAAAGACAGCAGCGACAGCGAATA
CGAGAGAAAGACCAAGAAAATCAAGAGCAAGAAGGTGCGTGTGATCAAGG
GGCTGAAGCTTCACAAGATCGTGGGGGGGTCACCGGCGGCGGCGACGGCA
GCGGCTGCCGAGAGGGGCGGTAGTGGAGTTCAGGGAGGAGGGGAAACATC
CGTGGGAGAATGGAATGATATTAGGACGAAGTTGGGTCTTAAGCCTTTGC
GAGAGTAAATGGCAAACCGGACAGATCCCACGGTGACGACTGTACACGGT
ACGAACCCACAGTTTTTGGTGGAAAAGATTTTGCGACAAAAAATATACAA
CAGCCTTTATTGGAAGGAGCACTGCTTTGGGCTGACAGCCGAGACGCTTG
TAGACAAGGCCGTGGGGTTGAGTGCCTATGGCGGCCAGTACGGGGGTATG
CAGAAGCCCACAAAGTTCATGTGCTTGGTCCTGAAGATGCTGCAGCTCCA
GCCCGAGAAGGAGATCGTTGTGGAGTTCATCAAGAACGAGGACTACAAGT
ACTTGCGCGTTCTGGGTGCATTTTACCTTCGCCTGGTGGGCAAGCCGCTG
GATATCTACCAGTATCTGGAGCCCCTCTACAACGACTACCGCAAGCTTCG
ATTTCGGGGCGTAGCGGGCTGGGCACTCAAGCACATGGACGAGTACATAG
AGGAGCTGCTGACGGGCGACTATTGCTGTGACGTAGCGTTGCCCCACCTG
CCTAAGCGGCACCTGCTCGAGGATCAGAAGCTCCTTACCCCCCGTGTCAG
CGCATTGGAGGACGAGGACCTGGATCCCCCGGAGGACGGAAACGAGGG
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Synonyms
Publications