jgi.p|Nanoce1779_2|592279, mRNA_5368 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592279
Unique NamemRNA_5368
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length747
Alignment locationscaffold_13:260841..261587 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592365
TrackFilteredModels2
ProteinId592279
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:260841..261587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592279gene_5368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592279mRNA_5368-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5368CDS_5368Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5368 ID=mRNA_5368|Name=jgi.p|Nanoce1779_2|592279|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
AGGATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAA
CTTCATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAA
CCTCATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTA
ATGCTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTT
TTTCCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCG
GTCTCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTA
ACTCCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTT
GAGTAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCC
TTGTTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTT
AGTGCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCAT
TAACCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCA
CCATTGCTTTTCTCCTGGAATTTTTCTTCGGCAAGGCCGAATTAGTGGAA
GAGGCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGA
TGTGGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGA
AAAGAGACTGAAACAGGCCCAAAGAAGAAATGAACGATCGAAAGTGC
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protein sequence of jgi.p|Nanoce1779_2|592279

>mRNA_5368-protein ID=mRNA_5368-protein|Name=jgi.p|Nanoce1779_2|592279|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVLARQSPRLISSLPNFIHPPPPVYYASRRSPTSYSAVCATSETSVVSVM
LANDIQSFRNTFRAFFFPGIAILTFGMPLVIAGLIVASPLTEKTTPTTVT
PRFTPNKLPSLRAVLLSKLLVSILIDLIGDGSLVVPGLGGASDFIWAPVS
ALLVRLLYGSNVLAAINLVEELLPFTDVIPTATIAFLLEFFFGKAELVEE
AQPQQRQGGRRIDISDVVDIEATVTKDDEKKRKRD*
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mRNA from alignment at scaffold_13:260841..261587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5368 ID=mRNA_5368|Name=jgi.p|Nanoce1779_2|592279|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at scaffold_13:260841..261587+ (Nannochloropsis oceanica)
AGGATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAA
CTTCATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAA
CCTCATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTA
ATGCTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTT
TTTCCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCG
GTCTCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTA
ACTCCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTT
GAGTAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCC
TTGTTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTT
AGTGCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCAT
TAACCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCA
CCATTGCTTTTCTCCTGGAATTTTTCTTCGGCAAGGCCGAATTAGTGGAA
GAGGCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGA
TGTGGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGA
AAAGAGACTGAAACAGGCCCAAAGAAGAAATGAACGATCGAAAGTGC
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Coding sequence (CDS) from alignment at scaffold_13:260841..261587+

>mRNA_5368 ID=mRNA_5368|Name=jgi.p|Nanoce1779_2|592279|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_13:260841..261587+ (Nannochloropsis oceanica)
ATGGTCCTGGCTCGACAAAGTCCGCGTCTCATCAGCAGTCTCCCCAACTT
CATTCACCCCCCTCCCCCGGTCTACTACGCCTCGAGACGGAGTCCAACCT
CATATAGCGCCGTATGCGCCACTTCTGAAACGTCCGTGGTGTCCGTAATG
CTTGCGAATGACATACAGTCCTTTCGTAACACATTTCGTGCCTTTTTTTT
CCCTGGCATTGCCATTCTGACATTTGGCATGCCGCTGGTAATCGCCGGTC
TCATTGTCGCAAGTCCACTCACCGAGAAGACGACACCAACTACTGTAACT
CCGCGCTTTACACCTAACAAATTACCTTCACTCAGAGCTGTTTTGTTGAG
TAAGCTGCTCGTCAGTATTCTCATTGACTTGATCGGGGACGGGTCCCTTG
TTGTGCCGGGGCTTGGAGGTGCGAGTGACTTCATCTGGGCACCCGTTAGT
GCCCTGTTGGTGCGGCTCTTATATGGGAGTAACGTCCTGGCTGCCATTAA
CCTTGTGGAGGAATTGCTTCCGTTTACAGATGTGATTCCAACGGCCACCA
TTGCTTTTCTCCTGGAATTTTTCTTCGGCAAGGCCGAATTAGTGGAAGAG
GCACAACCGCAACAGAGGCAAGGTGGGAGGAGGATAGATATCTCTGATGT
GGTGGACATAGAAGCAACAGTTACTAAAGATGACGAGAAAAAGAGGAAAA
GAGACTGA
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Synonyms
Publications