jgi.p|Nanoce1779_2|64318, mRNA_5367 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|64318
Unique NamemRNA_5367
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length839
Alignment locationscaffold_13:259658..260609 -

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Properties
Property NameValue
TranscriptId64404
TrackFilteredModels2
ProteinId64318
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:259658..260609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|64318gene_5367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|64318mRNA_5367-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5367CDS_5367Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5367 ID=mRNA_5367|Name=jgi.p|Nanoce1779_2|64318|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
GGTTTGCACGGCGCAGTGTCATTCAGGGTCGGCATGCGCCATTAAAAACC
GTTCCTGGTGTACCACCGAGAAACAAATCAAGTCAGGGGGGGAATACGTA
ATATTATAATAGAGTTTAAAGAATTTTGTTATTATGCTTGATCCAGCAAT
GTCAATGCGGTGTCATTGCTGCCAAAAACAAGGTCACGTCAACCTATACA
TGCGTCATGCACCCCCCATGAACAAACAGCACCATGGCAAGCACGGGAAT
TTGCAAAGGCGAGACGGCATGGCTGCAGAAGACCATCACAGTGCAGGCTG
AAGGGCGGGGATGTGAACTCATCACAAAACAAGTAGTAGATGCCGTCCCT
GAGCTGCGCAAATTTTCCGTCGGCACGCTTACCGTCTTCATTCAGCACAC
TTCTGCCTCTCTTTCTATCAACGAAAACGCCGACCCTACCGTCCGCACAG
ACATGGAGAAAGCCCTGAACATGATCGTCCCTGATAGCTGGGCGACGGGC
GGCTTGCTGGATCACGTTGACGAAGGGCCTGACGATATTACGGGCCATGT
GAAGGCAACCCTTGTAGGAGCAAATTTGACCATACCTGTCATGAAGGGCC
GACTAGCTCTCGGTACGTGGCAGGGTATCTATCTGTGCGAGCATCGCAAC
GCGGGCGGTTATGGAGGAGGCCACGCGCGGCGCCTCATCATTACGATTCA
TGGTCTAGTGTGTTCTTGAGCGTTAGAGGAGGGGGCAGCGGATCAGTACG
GATTCGAGTGGGCAGGGAAAATGGTTGGATGACCGGTGAGGCATAAGACG
AACCACATAACATGAAACTTCAAGCCCCCCCGGGGGGAT
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protein sequence of jgi.p|Nanoce1779_2|64318

>mRNA_5367-protein ID=mRNA_5367-protein|Name=jgi.p|Nanoce1779_2|64318|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MASTGICKGETAWLQKTITVQAEGRGCELITKQVVDAVPELRKFSVGTLT
VFIQHTSASLSINENADPTVRTDMEKALNMIVPDSWATGGLLDHVDEGPD
DITGHVKATLVGANLTIPVMKGRLALGTWQGIYLCEHRNAGGYGGGHARR
LIITIHGLVCS*
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mRNA from alignment at scaffold_13:259658..260609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5367 ID=mRNA_5367|Name=jgi.p|Nanoce1779_2|64318|organism=Nannochloropsis oceanica|type=mRNA|length=952bp|location=Sequence derived from alignment at scaffold_13:259658..260609- (Nannochloropsis oceanica)
GGTTTGCACGGCGCAGTGTCATTCAGGGTCGGCATGCGCCATTAAAAACC
GTTCCTGGTGTACCACCGAGAAACAAATCAAGTCAGGGGGGGAATACGTA
ATATTATAATAGAGTTTAAAGAATTTTGTTATTATGCTTGATCCAGCAAT
GTCAATGCGGTGTCATTGCTGCCAAAAACAAGGTCACGTCAACCTATACA
TGCGTCATGCACCCCCCATGAACAAACAGCACCATGGCAAGCACGGGAAT
TTGCAAAGGCGAGACGGCATGGCTGCAGAAGACCATCACAGTGCAGGCTG
AAGGGCGGGGATGTGAACTCATCACAAAACAAGTAGTAGATGCCGTCCCT
GAGCTGCGCAAATTTTCCGTCGGCACGCTTACCGTCTTCATTCAGCACAC
TTCTGCCTCTCTTTCTATCAACGAAAACGCCGACCCTACCGGTGAGCGAG
AAAGAATCAATCATGTACTGACTTGTATTTAAACATGAAATATTTTTTCC
GATAGCAAATATCACATCTCCTCAATGCCATGCATCACCAATCCACAAAA
CCAGTCCGCACAGACATGGAGAAAGCCCTGAACATGATCGTCCCTGATAG
CTGGGCGACGGGCGGCTTGCTGGATCACGTTGACGAAGGGCCTGACGATA
TTACGGGCCATGTGAAGGCAACCCTTGTAGGAGCAAATTTGACCATACCT
GTCATGAAGGGCCGACTAGCTCTCGGTACGTGGCAGGGTATCTATCTGTG
CGAGCATCGCAACGCGGGCGGTTATGGAGGAGGCCACGCGCGGCGCCTCA
TCATTACGATTCATGGTCTAGTGTGTTCTTGAGCGTTAGAGGAGGGGGCA
GCGGATCAGTACGGATTCGAGTGGGCAGGGAAAATGGTTGGATGACCGGT
GAGGCATAAGACGAACCACATAACATGAAACTTCAAGCCCCCCCGGGGGG
AT
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Coding sequence (CDS) from alignment at scaffold_13:259658..260609-

>mRNA_5367 ID=mRNA_5367|Name=jgi.p|Nanoce1779_2|64318|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_13:259658..260609- (Nannochloropsis oceanica)
TCCGCACAGACATGGAGAAAGCCCTGAACATGATCGTCCCTGATAGCTGG
GCGACGGGCGGCTTGCTGGATCACGTTGACGAAGGGCCTGACGATATTAC
GGGCCATGTGAAGGCAACCCTTGTAGGAGCAAATTTGACCATACCTGTCA
TGAAGGGCCGACTAGCTCTCGGTACGTGGCAGGGTATCTATCTGTGCGAG
CATCGCAACGCGGGCGGTTATGGAGGAGGCCACGCGCGGCGCCTCATCAT
TACGATTCATGGTCTAGTGTGTTCTTGAATGGCAAGCACGGGAATTTGCA
AAGGCGAGACGGCATGGCTGCAGAAGACCATCACAGTGCAGGCTGAAGGG
CGGGGATGTGAACTCATCACAAAACAAGTAGTAGATGCCGTCCCTGAGCT
GCGCAAATTTTCCGTCGGCACGCTTACCGTCTTCATTCAGCACACTTCTG
CCTCTCTTTCTATCAACGAAAACGCCGACCCTACCGTCCGCACAGACATG
GAGAAAGCCCTGAACATGATCGTCCCTGATAGCTGGGCGACGGGCGGCTT
GCTGGATCACGTTGACGAAGGGCCTGACGATATTACGGGCCATGTGAAGG
CAACCCTTGTAGGAGCAAATTTGACCATACCTGTCATGAAGGGCCGACTA
GCTCTCGGTACGTGGCAGGGTATCTATCTGTGCGAGCATCGCAACGCGGG
CGGTTATGGAGGAGGCCACGCGCGGCGCCTCATCATTACGATTCATGGTC
TAGTGTGTTCTTGAATGGCAAGCACGGGAATTTGCAAAGGCGAGACGGCA
TGGCTGCAGAAGACCATCACAGTGCAGGCTGAAGGGCGGGGATGTGAACT
CATCACAAAACAAGTAGTAGATGCCGTCCCTGAGCTGCGCAAATTTTCCG
TCGGCACGCTTACCGTCTTCATTCAGCACACTTCTGCCTCTCTTTCTATC
AACGAAAACGCCGACCCTACCG
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Synonyms
Publications