jgi.p|Nanoce1779_2|592262, mRNA_5361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592262
Unique NamemRNA_5361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length895
Alignment locationscaffold_13:247193..248087 +

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Properties
Property NameValue
TranscriptId592348
TrackFilteredModels2
ProteinId592262
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:247193..248087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592262gene_5361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592262mRNA_5361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5361CDS_5361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5361 ID=mRNA_5361|Name=jgi.p|Nanoce1779_2|592262|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
AGGGTAACCTCAACCATCATGCTGTCCAACGACGACAGCGACCAGCAAAA
TCTAGCGCACCAGATACCACCGAACTCAGAGCTGCCAACGGTGACGGCAT
CGATATCCTCCACGAGGCTAGGAAGTGTTCGTGCGGGAGCACTGAACGCC
TTTTTCACGTGCTCGCTCTGCGAGGGCTACCTGCGGGACCCCTACTTACT
TGTGTGCTGCTTCTCGCGTCGGTATTGCAAGGACTGCCTCATCCGGAATA
TGCGACAACATGACAGTAGATGTCCCAATGCGGCCTGTCAAGCGTACCTG
GGTGCCAAGCTCAGCTTGCTCGGGCGGCCTGACGCACAGCTCAAAGACAT
GATGCTCAAGCTCCTGCCTGAAGTTTTTGCGGAGGAGCGGCAACGGGAGG
AAGCCTTCTATTTGGCACGGGAGAGTCGCTACCCATCTACTGTTCCAGAG
CAAGACCTCCCTGCGACAAGCCAGTCACAGGCATTGCAGATCCGCCCGCG
CGACACGCCCTTGAGCCAGGACATGTTCATCTTGTGTCTGCCTGCAGAGG
GTTCAGGGGAGGACGGAGCGGCAGTAACAGGAGAGCCAGGAGCCATTGCA
CAGGAGTTAAACGTGCTTCCTGGCCTTCAACTTCCTTATCTTAAAGTGCA
GCGCCGCATGCAAGTCTTACATTTGCGCCGTGTGCTTGTGGCCGCCTTGG
GGCTCGCGACTGAGCTGGATCCAGACGAGGTGGACGTGATATGCAAGGGC
GAAGTGCTAACCGGTCAGCACTCGCTCTTCTTTATCGAGAAAATCAAGTG
GGCACAAGAACGGCCACCGCTTACCCTCCAGTACCGAAGGAAGGCCACAT
CTTGAGAAGAAAAGAAATGTGTAATGGAAAAAGAAAGAAAATTAC
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protein sequence of jgi.p|Nanoce1779_2|592262

>mRNA_5361-protein ID=mRNA_5361-protein|Name=jgi.p|Nanoce1779_2|592262|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLSNDDSDQQNLAHQIPPNSELPTVTASISSTRLGSVRAGALNAFFTCSL
CEGYLRDPYLLVCCFSRRYCKDCLIRNMRQHDSRCPNAACQAYLGAKLSL
LGRPDAQLKDMMLKLLPEVFAEERQREEAFYLARESRYPSTVPEQDLPAT
SQSQALQIRPRDTPLSQDMFILCLPAEGSGEDGAAVTGEPGAIAQELNVL
PGLQLPYLKVQRRMQVLHLRRVLVAALGLATELDPDEVDVICKGEVLTGQ
HSLFFIEKIKWAQERPPLTLQYRRKATS*
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mRNA from alignment at scaffold_13:247193..248087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5361 ID=mRNA_5361|Name=jgi.p|Nanoce1779_2|592262|organism=Nannochloropsis oceanica|type=mRNA|length=895bp|location=Sequence derived from alignment at scaffold_13:247193..248087+ (Nannochloropsis oceanica)
AGGGTAACCTCAACCATCATGCTGTCCAACGACGACAGCGACCAGCAAAA
TCTAGCGCACCAGATACCACCGAACTCAGAGCTGCCAACGGTGACGGCAT
CGATATCCTCCACGAGGCTAGGAAGTGTTCGTGCGGGAGCACTGAACGCC
TTTTTCACGTGCTCGCTCTGCGAGGGCTACCTGCGGGACCCCTACTTACT
TGTGTGCTGCTTCTCGCGTCGGTATTGCAAGGACTGCCTCATCCGGAATA
TGCGACAACATGACAGTAGATGTCCCAATGCGGCCTGTCAAGCGTACCTG
GGTGCCAAGCTCAGCTTGCTCGGGCGGCCTGACGCACAGCTCAAAGACAT
GATGCTCAAGCTCCTGCCTGAAGTTTTTGCGGAGGAGCGGCAACGGGAGG
AAGCCTTCTATTTGGCACGGGAGAGTCGCTACCCATCTACTGTTCCAGAG
CAAGACCTCCCTGCGACAAGCCAGTCACAGGCATTGCAGATCCGCCCGCG
CGACACGCCCTTGAGCCAGGACATGTTCATCTTGTGTCTGCCTGCAGAGG
GTTCAGGGGAGGACGGAGCGGCAGTAACAGGAGAGCCAGGAGCCATTGCA
CAGGAGTTAAACGTGCTTCCTGGCCTTCAACTTCCTTATCTTAAAGTGCA
GCGCCGCATGCAAGTCTTACATTTGCGCCGTGTGCTTGTGGCCGCCTTGG
GGCTCGCGACTGAGCTGGATCCAGACGAGGTGGACGTGATATGCAAGGGC
GAAGTGCTAACCGGTCAGCACTCGCTCTTCTTTATCGAGAAAATCAAGTG
GGCACAAGAACGGCCACCGCTTACCCTCCAGTACCGAAGGAAGGCCACAT
CTTGAGAAGAAAAGAAATGTGTAATGGAAAAAGAAAGAAAATTAC
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Coding sequence (CDS) from alignment at scaffold_13:247193..248087+

>mRNA_5361 ID=mRNA_5361|Name=jgi.p|Nanoce1779_2|592262|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_13:247193..248087+ (Nannochloropsis oceanica)
ATGCTGTCCAACGACGACAGCGACCAGCAAAATCTAGCGCACCAGATACC
ACCGAACTCAGAGCTGCCAACGGTGACGGCATCGATATCCTCCACGAGGC
TAGGAAGTGTTCGTGCGGGAGCACTGAACGCCTTTTTCACGTGCTCGCTC
TGCGAGGGCTACCTGCGGGACCCCTACTTACTTGTGTGCTGCTTCTCGCG
TCGGTATTGCAAGGACTGCCTCATCCGGAATATGCGACAACATGACAGTA
GATGTCCCAATGCGGCCTGTCAAGCGTACCTGGGTGCCAAGCTCAGCTTG
CTCGGGCGGCCTGACGCACAGCTCAAAGACATGATGCTCAAGCTCCTGCC
TGAAGTTTTTGCGGAGGAGCGGCAACGGGAGGAAGCCTTCTATTTGGCAC
GGGAGAGTCGCTACCCATCTACTGTTCCAGAGCAAGACCTCCCTGCGACA
AGCCAGTCACAGGCATTGCAGATCCGCCCGCGCGACACGCCCTTGAGCCA
GGACATGTTCATCTTGTGTCTGCCTGCAGAGGGTTCAGGGGAGGACGGAG
CGGCAGTAACAGGAGAGCCAGGAGCCATTGCACAGGAGTTAAACGTGCTT
CCTGGCCTTCAACTTCCTTATCTTAAAGTGCAGCGCCGCATGCAAGTCTT
ACATTTGCGCCGTGTGCTTGTGGCCGCCTTGGGGCTCGCGACTGAGCTGG
ATCCAGACGAGGTGGACGTGATATGCAAGGGCGAAGTGCTAACCGGTCAG
CACTCGCTCTTCTTTATCGAGAAAATCAAGTGGGCACAAGAACGGCCACC
GCTTACCCTCCAGTACCGAAGGAAGGCCACATCTTGA
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Synonyms
Publications