jgi.p|Nanoce1779_2|592256, mRNA_5358 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592256
Unique Name	mRNA_5358
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	969
Alignment location	scaffold_13:239460..240679 +

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Properties


Property Name	Value
TranscriptId	592342
Track	FilteredModels2
ProteinId	592256

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:239460..240679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592256	gene_5358	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592256	mRNA_5358-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5358	CDS_5358	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:239460..240679+
coding sequence from alignment at scaffold_13:239460..240679+

mRNA sequence

>mRNA_5358 ID=mRNA_5358|Name=jgi.p|Nanoce1779_2|592256|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
AGGCACCTTTGCAGTCGGGATGCTCACAAGTCTTGTCAGAACGACGTCAT
CGCGGGCCGCTGCGACGGCGCTACCCGCTACCACGTGGACGCAACGAGGT
GTGGCGGCGGCGCGCAACCTGGCGAGCAGCAGCAGTACCAGCGCCGGGCC
TGTTGATAAGATGGAGTCTTTCGACAACTACTATGAGAAGGACAAGCTGC
ACAAGCAGCCGGGAGACCCCAACAAGCGTGATTTCACGTACTTTGTTTTG
GGTGGGGCTCGCTTCATCTACGCGTCGGCTGCCCGCTTGGTGGCCTTGAA
ATTTGTTTCAACTATGAGTGCCTCAGCAGATGTGCTAGCCCTGGCCAATG
CGGAATTCGATATTGGTGACATCCCGCTTGGGCAAGGCGTGACGGTCAAG
TGGCGCGGCAAGCCCATCTTCATCCGCCACCGTACCCCGGCTGAGATCGA
TAGGGAGAATGCCGTGAATATGAACGAGCTCCGTGACGCTGAGGCAGACA
CTGTCCGGGCCCAGCGACCGGAATGGCTCATCATTGTCGGTATTTGCACG
CATCTAGGCTGTGTCCCCATCGCCAACGCGGGTGAATACCACGGGTGGTT
CTGCCCTTGCCACGGCTCCCACTACGACGTCTCGGGCCGTATCCGCAAGG
GCCCCGCGCCTTTAAATATGGAGATTCCTCCCTACAAGTTCTTAGCGGAC
ACCAAGGTGCTCATTGGTTAGACGTTCGACCATGGGTGGAGGGGCAGTTC
TGGGATAGATGAATGAAAGGGAAGATGGATTTATACGATTTTTTTTTTGC
GCAGGCATGGCTATATGCATGCTCGTGTGTGTCTCTCGTCCTCTGTTTTC
ACTTGAAGGGGCAGGATTATTCTGTAGCTGGACGTTGGAAGCGGGTTTTG
TGGGAGAGAAGAGGGAAGAAGGGAGGGAGGGAGGGGGATGTCAAATAGTA
AGAAAGATGAAGACGACGA

protein sequence of jgi.p|Nanoce1779_2|592256

>mRNA_5358-protein ID=mRNA_5358-protein|Name=jgi.p|Nanoce1779_2|592256|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MLTSLVRTTSSRAAATALPATTWTQRGVAAARNLASSSSTSAGPVDKMES
FDNYYEKDKLHKQPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMS
ASADVLALANAEFDIGDIPLGQGVTVKWRGKPIFIRHRTPAEIDRENAVN
MNELRDAEADTVRAQRPEWLIIVGICTHLGCVPIANAGEYHGWFCPCHGS
HYDVSGRIRKGPAPLNMEIPPYKFLADTKVLIG*

mRNA from alignment at scaffold_13:239460..240679+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5358 ID=mRNA_5358|Name=jgi.p|Nanoce1779_2|592256|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at scaffold_13:239460..240679+ (Nannochloropsis oceanica)
AGGCACCTTTGCAGTCGGGATGCTCACAAGTCTTGTCAGAACGACGTCAT
CGCGGGCCGCTGCGACGGCGCTACCCGCTACCACGTGGACGCAACGAGGT
AAGAAATTTGTCAATTGTGAGTTGTGTGCCGTGCATGCAGGCAGGCATTT
AAGTTCAGGCTATTCCCTCTTCCACGCGAGGCAGAGCACTCACTCGCAAT
AGTGTGTAGAAGTGTCGTACGCAGCTTGCGAGTTTGCGCTAGCGTGTGCG
GTGCGTTGTGTGGGAAAAGTGTTCTGACCATAGACGCTAGCTCGCACACA
CTTCTTCAGTCTATCCTCGTCACCAATCCTCCCTATGCGCACACAGCAGG
TGTGGCGGCGGCGCGCAACCTGGCGAGCAGCAGCAGTACCAGCGCCGGGC
CTGTTGATAAGATGGAGTCTTTCGACAACTACTATGAGAAGGACAAGCTG
CACAAGCAGCCGGGAGACCCCAACAAGCGTGATTTCACGTACTTTGTTTT
GGGTGGGGCTCGCTTCATCTACGCGTCGGCTGCCCGCTTGGTGGCCTTGA
AATTTGTTTCAACTATGAGTGCCTCAGCAGATGTGCTAGCCCTGGCCAAT
GCGGAATTCGATATTGGTGACATCCCGCTTGGGCAAGGCGTGACGGTCAA
GTGGCGCGGCAAGCCCATCTTCATCCGCCACCGTACCCCGGCTGAGATCG
ATAGGGAGAATGCCGTGAATATGAACGAGCTCCGTGACGCTGAGGCAGAC
ACTGTCCGGGCCCAGCGACCGGAATGGCTCATCATTGTCGGTATTTGCAC
GCATCTAGGCTGTGTCCCCATCGCCAACGCGGGTGAATACCACGGGTGGT
TCTGCCCTTGCCACGGCTCCCACTACGACGTCTCGGGCCGTATCCGCAAG
GGCCCCGCGCCTTTAAATATGGAGATTCCTCCCTACAAGTTCTTAGCGGA
CACCAAGGTGCTCATTGGTTAGACGTTCGACCATGGGTGGAGGGGCAGTT
CTGGGATAGATGAATGAAAGGGAAGATGGATTTATACGATTTTTTTTTTG
CGCAGGCATGGCTATATGCATGCTCGTGTGTGTCTCTCGTCCTCTGTTTT
CACTTGAAGGGGCAGGATTATTCTGTAGCTGGACGTTGGAAGCGGGTTTT
GTGGGAGAGAAGAGGGAAGAAGGGAGGGAGGGAGGGGGATGTCAAATAGT
AAGAAAGATGAAGACGACGA

Coding sequence (CDS) from alignment at scaffold_13:239460..240679+

>mRNA_5358 ID=mRNA_5358|Name=jgi.p|Nanoce1779_2|592256|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_13:239460..240679+ (Nannochloropsis oceanica)
ATGCTCACAAGTCTTGTCAGAACGACGTCATCGCGGGCCGCTGCGACGGC
GCTACCCGCTACCACGTGGACGCAACGAGGTGTGGCGGCGGCGCGCAACC
TGGCGAGCAGCAGCAGTACCAGCGCCGGGCCTGTTGATAAGATGGAGTCT
TTCGACAACTACTATGAGAAGGACAAGCTGCACAAGCAGCCGGGAGACCC
CAACAAGCGTGATTTCACGTACTTTGTTTTGGGTGGGGCTCGCTTCATCT
ACGCGTCGGCTGCCCGCTTGGTGGCCTTGAAATTTGTTTCAACTATGAGT
GCCTCAGCAGATGTGCTAGCCCTGGCCAATGCGGAATTCGATATTGGTGA
CATCCCGCTTGGGCAAGGCGTGACGGTCAAGTGGCGCGGCAAGCCCATCT
TCATCCGCCACCGTACCCCGGCTGAGATCGATAGGGAGAATGCCGTGAAT
ATGAACGAGCTCCGTGACGCTGAGGCAGACACTGTCCGGGCCCAGCGACC
GGAATGGCTCATCATTGTCGGTATTTGCACGCATCTAGGCTGTGTCCCCA
TCGCCAACGCGGGTGAATACCACGGGTGGTTCTGCCCTTGCCACGGCTCC
CACTACGACGTCTCGGGCCGTATCCGCAAGGGCCCCGCGCCTTTAAATAT
GGAGATTCCTCCCTACAAGTTCTTAGCGGACACCAAGGTGCTCATTGGTT
AGATGCTCACAAGTCTTGTCAGAACGACGTCATCGCGGGCCGCTGCGACG
GCGCTACCCGCTACCACGTGGACGCAACGAGGTGTGGCGGCGGCGCGCAA
CCTGGCGAGCAGCAGCAGTACCAGCGCCGGGCCTGTTGATAAGATGGAGT
CTTTCGACAACTACTATGAGAAGGACAAGCTGCACAAGCAGCCGGGAGAC
CCCAACAAGCGTGATTTCACGTACTTTGTTTTGGGTGGGGCTCGCTTCAT
CTACGCGTCGGCTGCCCGCTTGGTGGCCTTGAAATTTGTTTCAACTATGA
GTGCCTCAGCAGATGTGCTAGCCCTGGCCAATGCGGAATTCGATATTGGT
GACATCCCGCTTGGGCAAGGCGTGACGGTCAAGTGGCGCGGCAAGCCCAT
CTTCATCCGCCACCGTACCCCGGCTGAGATCGATAGGGAGAATGCCGTGA
ATATGAACGAGCTCCGTGACGCTGAGGCAGACACTGTCCGGGCCCAGCGA
CCGGAATGGCTCATCATTGTCGGTATTTGCACGCATCTAGGCTGTGTCCC
CATCGCCAACGCGGGTGAATACCACGGGTGGTTCTGCCCTTGCCACGGCT
CCCACTACGACGTCTCGGGCCGTATCCGCAAGGGCCCCGCGCCTTTAAAT
ATGGAGATTCCTCCCTACAAGTTCTTAGCGGACACCAAGGTGCTCATTGG
TTAG

Synonyms

Publications