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Properties
| Property Name | Value |
|---|
| TranscriptId | 592332 |
| Track | FilteredModels2 |
| ProteinId | 592246 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:231434..232893 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5356 ID=mRNA_5356|Name=jgi.p|Nanoce1779_2|592246|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp
GTGAGGGGAAGTGTCTGTGATTAAGTATCGTATGCATTATATGTGTGAGT
GGGTTGTAGGTCTGAGGGCGTCCGCGAAAGGGTATTTATAGGTTTGACAA
ATGGAGGTTCGCCAAACATGCTCGCTTTAAAAGAAGCATGTTACGAGCGA
TTGGACTCCGCTTTACATCCTTATCGTTCATAAAGCAAGAACAGGTATGC
TTGGACTGGAGCTGCGTGTGGTGTGCGTGGAGTGTTGGGTGCTCGTACCA
TATTTGCCAAACGATGGCAAGCAGAGAAGGAGAGAGGAGGGACGCGCGAT
AATTCTTCGCGCGCTATAGCTTGGCATGGTCATTCTCACGGCATAACGGC
ATGGGTGCTTCTCTCCTTGCTTCGGAAGCAACTCAAACCCTTCGACCAGA
AACACGCACTTCATGATTGACATTTTCCTCCCCCCAAAGCTCAGAGCACA
TTGCCTTTCTACGAGCCGAAAGCGATGGTCATGCGGAGAGTAGCACAACC
ACAGACGGTGGGACTCCAATTATTCCTCCTCCTCGTGCTGATGATGCTCC
ACGCGGCGATTGCAGACACGGCCCCCATCTTCAGCATGACCAGCACCAGC
GGCGGTCCCGCGGCGGCCACCACATCGGGGGGTGGCGGGAACGGCATTCC
CCGGCGCATGGCAAGCACGGGGGGAAAGGGCACGCAAAGATTGGGCGGCG
TGGGCTTTGACAAGGAGCGGACGCTGGGGTTTGTAGAGTACTTGAGCACG
GACGCCTTGGAAAGCATCGACACGTTTGATCGGCTCTCCGTGGGCTTGAA
CATGACCATTGAGAACTTTTTTACATTCATCAACCGGCTGCTGGAAGAAG
AGGTCCCAAGGGACGAGGACGAGGACGAGGACGAGGACGGGTCAGGCGAC
GAGGATACGTTGAGCGTGAAGCAGCTGGGCCAATTGTTTGGGGGAGTAAA
CGACACGGCGGTGGAATATATTCTGGACAATCTAGACGCGGACATTTACG
ACTTGCAGGCAGGCTTTAACACGGTGGACGTGATCATGGTGCTGATGTTC
GTATCTTCCCATCTGGAGGCTAATCGTTTGCCTCTCTCCATTCTCGAGAT
CATCTCCGCCTTCTGCGACCCTGAATGGGAAGACCTGGACGCGGATGTGT
GGGTGCCGAATGTGGCCAAGCTTAAGGGTGTGAAGGAGGCGGACGTTCAG
CGGGTCATGAATCAGCTGGAGGGCTCCTTGGAGGACATCAGGGGGTATGT
GGACGAGATAGTGCGGATGGACTGTTGCGAGCTTGTTCTCAACGGTGGCT
TTCCTACTGTCGTCTCGGCGTCCTCTGCTAAGGCCAGTCCTCGACTTACT
AGTCCCCGGCTTACCTCATCTGTTTCTATCGACAAGCGCAGTGGGTATTA
AAGGAAGTTAGGAAATTAGACACAACACGAGATAAAAAGAAAAAGAACGA
GGTATTTGTA back to topprotein sequence of jgi.p|Nanoce1779_2|592246 >mRNA_5356-protein ID=mRNA_5356-protein|Name=jgi.p|Nanoce1779_2|592246|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MVMRRVAQPQTVGLQLFLLLVLMMLHAAIADTAPIFSMTSTSGGPAAATT
SGGGGNGIPRRMASTGGKGTQRLGGVGFDKERTLGFVEYLSTDALESIDT
FDRLSVGLNMTIENFFTFINRLLEEEVPRDEDEDEDEDGSGDEDTLSVKQ
LGQLFGGVNDTAVEYILDNLDADIYDLQAGFNTVDVIMVLMFVSSHLEAN
RLPLSILEIISAFCDPEWEDLDADVWVPNVAKLKGVKEADVQRVMNQLEG
SLEDIRGYVDEIVRMDCCELVLNGGFPTVVSASSAKASPRLTSPRLTSSV
SIDKRSGY* back to topmRNA from alignment at scaffold_13:231434..232893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5356 ID=mRNA_5356|Name=jgi.p|Nanoce1779_2|592246|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp|location=Sequence derived from alignment at scaffold_13:231434..232893- (Nannochloropsis oceanica)
GTGAGGGGAAGTGTCTGTGATTAAGTATCGTATGCATTATATGTGTGAGT
GGGTTGTAGGTCTGAGGGCGTCCGCGAAAGGGTATTTATAGGTTTGACAA
ATGGAGGTTCGCCAAACATGCTCGCTTTAAAAGAAGCATGTTACGAGCGA
TTGGACTCCGCTTTACATCCTTATCGTTCATAAAGCAAGAACAGGTATGC
TTGGACTGGAGCTGCGTGTGGTGTGCGTGGAGTGTTGGGTGCTCGTACCA
TATTTGCCAAACGATGGCAAGCAGAGAAGGAGAGAGGAGGGACGCGCGAT
AATTCTTCGCGCGCTATAGCTTGGCATGGTCATTCTCACGGCATAACGGC
ATGGGTGCTTCTCTCCTTGCTTCGGAAGCAACTCAAACCCTTCGACCAGA
AACACGCACTTCATGATTGACATTTTCCTCCCCCCAAAGCTCAGAGCACA
TTGCCTTTCTACGAGCCGAAAGCGATGGTCATGCGGAGAGTAGCACAACC
ACAGACGGTGGGACTCCAATTATTCCTCCTCCTCGTGCTGATGATGCTCC
ACGCGGCGATTGCAGACACGGCCCCCATCTTCAGCATGACCAGCACCAGC
GGCGGTCCCGCGGCGGCCACCACATCGGGGGGTGGCGGGAACGGCATTCC
CCGGCGCATGGCAAGCACGGGGGGAAAGGGCACGCAAAGATTGGGCGGCG
TGGGCTTTGACAAGGAGCGGACGCTGGGGTTTGTAGAGTACTTGAGCACG
GACGCCTTGGAAAGCATCGACACGTTTGATCGGCTCTCCGTGGGCTTGAA
CATGACCATTGAGAACTTTTTTACATTCATCAACCGGCTGCTGGAAGAAG
AGGTCCCAAGGGACGAGGACGAGGACGAGGACGAGGACGGGTCAGGCGAC
GAGGATACGTTGAGCGTGAAGCAGCTGGGCCAATTGTTTGGGGGAGTAAA
CGACACGGCGGTGGAATATATTCTGGACAATCTAGACGCGGACATTTACG
ACTTGCAGGCAGGCTTTAACACGGTGGACGTGATCATGGTGCTGATGTTC
GTATCTTCCCATCTGGAGGCTAATCGTTTGCCTCTCTCCATTCTCGAGAT
CATCTCCGCCTTCTGCGACCCTGAATGGGAAGACCTGGACGCGGATGTGT
GGGTGCCGAATGTGGCCAAGCTTAAGGGTGTGAAGGAGGCGGACGTTCAG
CGGGTCATGAATCAGCTGGAGGGCTCCTTGGAGGACATCAGGGGGTATGT
GGACGAGATAGTGCGGATGGACTGTTGCGAGCTTGTTCTCAACGGTGGCT
TTCCTACTGTCGTCTCGGCGTCCTCTGCTAAGGCCAGTCCTCGACTTACT
AGTCCCCGGCTTACCTCATCTGTTTCTATCGACAAGCGCAGTGGGTATTA
AAGGAAGTTAGGAAATTAGACACAACACGAGATAAAAAGAAAAAGAACGA
GGTATTTGTA back to topCoding sequence (CDS) from alignment at scaffold_13:231434..232893- >mRNA_5356 ID=mRNA_5356|Name=jgi.p|Nanoce1779_2|592246|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_13:231434..232893- (Nannochloropsis oceanica)
ATGGTCATGCGGAGAGTAGCACAACCACAGACGGTGGGACTCCAATTATT
CCTCCTCCTCGTGCTGATGATGCTCCACGCGGCGATTGCAGACACGGCCC
CCATCTTCAGCATGACCAGCACCAGCGGCGGTCCCGCGGCGGCCACCACA
TCGGGGGGTGGCGGGAACGGCATTCCCCGGCGCATGGCAAGCACGGGGGG
AAAGGGCACGCAAAGATTGGGCGGCGTGGGCTTTGACAAGGAGCGGACGC
TGGGGTTTGTAGAGTACTTGAGCACGGACGCCTTGGAAAGCATCGACACG
TTTGATCGGCTCTCCGTGGGCTTGAACATGACCATTGAGAACTTTTTTAC
ATTCATCAACCGGCTGCTGGAAGAAGAGGTCCCAAGGGACGAGGACGAGG
ACGAGGACGAGGACGGGTCAGGCGACGAGGATACGTTGAGCGTGAAGCAG
CTGGGCCAATTGTTTGGGGGAGTAAACGACACGGCGGTGGAATATATTCT
GGACAATCTAGACGCGGACATTTACGACTTGCAGGCAGGCTTTAACACGG
TGGACGTGATCATGGTGCTGATGTTCGTATCTTCCCATCTGGAGGCTAAT
CGTTTGCCTCTCTCCATTCTCGAGATCATCTCCGCCTTCTGCGACCCTGA
ATGGGAAGACCTGGACGCGGATGTGTGGGTGCCGAATGTGGCCAAGCTTA
AGGGTGTGAAGGAGGCGGACGTTCAGCGGGTCATGAATCAGCTGGAGGGC
TCCTTGGAGGACATCAGGGGGTATGTGGACGAGATAGTGCGGATGGACTG
TTGCGAGCTTGTTCTCAACGGTGGCTTTCCTACTGTCGTCTCGGCGTCCT
CTGCTAAGGCCAGTCCTCGACTTACTAGTCCCCGGCTTACCTCATCTGTT
TCTATCGACAAGCGCAGTGGGTATTAA back to top
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