jgi.p|Nanoce1779_2|671439, mRNA_5355 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671439
Unique NamemRNA_5355
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_13:229939..231415 +

Link to JBrowse

Properties
Property NameValue
TranscriptId671525
TrackFilteredModels2
ProteinId671439
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:229939..231415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671439gene_5355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671439mRNA_5355-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5355CDS_5355Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5355 ID=mRNA_5355|Name=jgi.p|Nanoce1779_2|671439|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGTCTGGCTTTGGAATCGAC
GCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCACCATGCAGGCAGTGC
TGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGCGGGCCACAAGAGCG
ACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCT
ACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGA
CCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTC
AACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCG
ACCGCTATTTTTATTCTTGACCTTCTCAAGCCTAGCTTACAAGACGGTGA
CATACGACATCCAACTGCACAAGAAACCCTTGCGCAGTCTGCCTACTTGG
CTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAA
TCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGCTTCTTCTTTGCACG
GAACCACACCACGGCCTGTAATGCTTCGATATAGGGTGCGAGGCATGAAG
TGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTGGAGGCCATGGGGGA
TTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAG
ATGTAGCAACAGCAACAGAGCACCGCGATGGGATGACAGAAGGAGAGACA
GCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGCGTTGCGGATGTGAT
GCATGACAGAGGGTACAGCTACCACAGCCTGTAGCCGCGTCGAGCCTCGT
GATATCCGCCGCTGTACGTAGAAAAGAATTCGGCACTGTATGAAAATGTA
ATATCTGTAAGACATGCACATAGCTTTGTATAGGGTCGAGTATATAAAAT
GAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAATCAAAAAGAAAGGAC
ACCTTCTTGAAAATTGATGACACGATTAAGGAGTATCATTTTCAAGACAG
GGAGTATGGTGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|671439

>mRNA_5355-protein ID=mRNA_5355-protein|Name=jgi.p|Nanoce1779_2|671439|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTGPRISSFLSPCNNPPGGGAVCGPLVSGANRIEGKPQNHPGKASSFSSS
SASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRR
STIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLL
SSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQL
HKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRP
VMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFEQGMVFLVADVATAT
EHRDGMTEGETAAASVLQTLEQGVADVMHDRGYSYHSL*
back to top

mRNA from alignment at scaffold_13:229939..231415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5355 ID=mRNA_5355|Name=jgi.p|Nanoce1779_2|671439|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at scaffold_13:229939..231415+ (Nannochloropsis oceanica)
ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGGTAAATTTTCTGTAGCAA
GCCTCGGTCGTGCCCGTGTTGGGACGGTCCTTACACCGAAGGGTGTGTTA
AAAGTAGGGCTGCAACGACGGCGCTACGTATTGCCGGATGAGCGGAACAT
TTTTGTCCCTTGTTACATCTGCCTGTACGGCTGTCTTGTTGCGCAGTGAT
GGGGTCGTACTTACCACTTGTTTGCTTTCCCCGATATTATCCGCAGTCTG
GCTTTGGAATCGACGCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCAC
CATGCAGGCAGTGCTGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGC
GGGCCACAAGAGCGACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTG
GCTGTGGTCTTGCTACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGA
GTTGCTCGCGGCGACCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCG
TCCAATTGGTCCTCAACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTT
TTGGACCGTTTTCGACCGCTATTTTTATTCTTGACCTTCTCAAGCCTAGC
TTACAAGACGGTGACATACGACATCCAACTGCACAAGAAACCCTTGCGCA
GTCTGCCTACTTGGCTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTG
GTGCGTCGCCTTAATCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGC
TTCTTCTTTGCACGGAACCACACCACGGCCTGTAATGCTTCGATATAGGG
TGCGAGGCATGAAGTGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTG
GAGGCCATGGGGGATTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGT
TTTTCTCGTGGCAGATGTAGCAACAGCAACAGAGCACCGCGATGGGATGA
CAGAAGGAGAGACAGCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGC
GTTGCGGATGTGATGCATGACAGAGGGTACAGCTACCACAGCCTGTAGCC
GCGTCGAGCCTCGTGATATCCGCCGCTGTACGTAGAAAAGAATTCGGCAC
TGTATGAAAATGTAATATCTGTAAGACATGCACATAGCTTTGTATAGGGT
CGAGTATATAAAATGAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAAT
CAAAAAGAAAGGACACCTTCTTGAAAATTGATGACACGATTAAGGAGTAT
CATTTTCAAGACAGGGAGTATGGTGAC
back to top

Coding sequence (CDS) from alignment at scaffold_13:229939..231415+

>mRNA_5355 ID=mRNA_5355|Name=jgi.p|Nanoce1779_2|671439|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_13:229939..231415+ (Nannochloropsis oceanica)
ATGACTGGGCCTCGCATCAGCAGCTTCTTGTCTCCTTGTAACAATCCGCC
AGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTCAGGTGCTAACCGTATCG
AAGGGAAGCCTCAGAATCACCCCGGCAAGGCATCTTCTTTCTCCTCCTCA
TCTGCCTCTTCTTGTGGCCTGATCTCGGAATCCCTGCTCACATCCGCAGA
GCTCGACAGCACAAGTCTGGCTTTGGAATCGACGCTAAAGGGAAAACTGG
CCCGTCAAGGGCAAAGCACCATGCAGGCAGTGCTGTCGAGTCGGCGGCGT
TCTACCATTCCACCTACGCGGGCCACAAGAGCGACAGTGGCCACAGCCTT
GGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCTACGGAAGAGTCGGGTGG
GCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGACCGTTGGAGGTCTCCTT
TCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTCAACTCCATCTCCGTGGG
CTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCGACCGCTATTTTTATTCT
TGACCTTCTCAAGCCTAGCTTACAAGACGGTGACATACGACATCCAACTG
CACAAGAAACCCTTGCGCAGTCTGCCTACTTGGCTTGTGGCCGTGGCCTT
GGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAATCGTGGGGAGTTGAGCA
TGGGGAGCTTCAATTTGGCTTCTTCTTTGCACGGAACCACACCACGGCCT
GTAATGCTTCGATATAGGGTGCGAGGCATGAAGTGTGAAGCATGTGCGAA
TGGACTGAAGAATGCGCTGGAGGCCATGGGGGATTTGCGAGCAGACGTGA
TTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAGATGTAGCAACAGCAACA
GAGCACCGCGATGGGATGACAGAAGGAGAGACAGCCGCGGCGAGTGTATT
GCAGACGTTGGAGCAGGGCGTTGCGGATGTGATGCATGACAGAGGGTACA
GCTACCACAGCCTGTAGATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGTCTGGCTTTGGAATCGAC
GCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCACCATGCAGGCAGTGC
TGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGCGGGCCACAAGAGCG
ACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCT
ACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGA
CCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTC
AACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCG
ACCGCTATTTTTATTCTTGACCTTCTCAAGCCTAGCTTACAAGACGGTGA
CATACGACATCCAACTGCACAAGAAACCCTTGCGCAGTCTGCCTACTTGG
CTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAA
TCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGCTTCTTCTTTGCACG
GAACCACACCACGGCCTGTAATGCTTCGATATAGGGTGCGAGGCATGAAG
TGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTGGAGGCCATGGGGGA
TTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAG
ATGTAGCAACAGCAACAGAGCACCGCGATGGGATGACAGAAGGAGAGACA
GCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGCGTTGCGGATGTGAT
GCATGACAGAGGGTACAGCTACCACAGCCTGTAG
back to top
Synonyms
Publications