jgi.p|Nanoce1779_2|592243, mRNA_5354 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592243
Unique Name	mRNA_5354
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2832
Alignment location	scaffold_13:226994..229825 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592329
Track	FilteredModels2
ProteinId	592243

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:226994..229825 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592243	gene_5354	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592243	mRNA_5354-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5354	CDS_5354	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:226994..229825-
coding sequence from alignment at scaffold_13:226994..229825-

mRNA sequence

>mRNA_5354 ID=mRNA_5354|Name=jgi.p|Nanoce1779_2|592243|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp
AAAAACCACAGGCTCAAAAATGGTACTGAGGATGCTTAATAAAGAGGAGC
GGGTATGTCTACTCGGCCTGGTGGCACTTTCCTTGCCCGTCCACGACCAA
GCCTTGGGGGAGTACAACACGCAACTTTTGCGTGTTGTCTCCGGCCTGTT
GGATCTGAAGGAGCACCATTGCCACGCCCTCCAGCCCTTGCTACACTCGG
AAGGCAACGACTTAGAGATCCGACAAGCACAACTTCAGGCCTTTTTAAAG
CCCTTTGTGCTGACGGGCAGGCCTGAGCAGCAGAAGGGGCACACTGTAGC
ATCAGCAGTAGCCGCGGGACGGGAGCGTCCCGACCGCTATGACCCACCTC
AACCGCAACAAGGGACCCAGGGAGCACACAAAGAATGGGAGGCTAAGCAA
GCACAACTGCGGTACTTGATTTTGCGGGATTTACTAGTTCATTTGGCTTG
CTTGTCTATGTATGATGCACGCACGCGCCGGATCATGGTACGGCTGGCCT
TGGACGCGTTCGAAGTGGAGTGGCGTGACATGGCCAGCATTGAAGCATTA
ACAGCCTCGCACCTCCACGAGATCTGGGAAACATCGCAAGCGAAGGATAA
GGTTCACACTGGTTTACGGTACGCCAAAATCACGGCTGCCGCGTTGGGCG
GTGGGGCCTTACTGGCATTTACGGGTGGGCTAGCGGCTCCTGCGATTGGT
GTAGGTTTGAGCGCTCTAAGCGCCACAGGGGCCGTGGTTGCCGGCTTTAC
CACTACTGCCAGTGTCGCCACGCTTTTTGGAGCGTCAGGCGCGGGTTTGG
TGGGATTCAAAATGAAGAGGCGGACGGCTGCCCTATCAGAATTTCAGTTT
CGGCATGTCGAGCGGAGCGAGGAGGAGGAGGACAGCGACTTGGGGAGGAT
GGCCATTTGCATATGTATTTCTGGGTGGCTGCTCAACGACGAGAGCGAGT
ATGACACTCCCTTCGGCGTCGAGCCGCGAAACTCGGACGTGGCGGCTCGC
CTGCGTTTGTTTTATTCCCTTTACAACCCGGACAATGTCAAGTACGCGGC
GATTTTGGCGACCGAGTTCAAGGGTCGGGAGGACGACCTCGAGCGTGAGT
GCTTGCACAAGTATGGAACGAGCCCCTTTGACAGCTATGACACTTGGAGC
GCAGTCGGGGGTGGCAGCCGTAGCACCACCAACACCAACAGCAGCATGAG
CATTGGCAGCAGCAAGAATCTGTACAAGGACGTGTCAGAAGCGGAGAAGG
AGGAGGTGTTTCGCCTCATTGCTTCCTACGATAAAGACTCTGTCAGCAGA
ATCACCGACGCGGACGCCCGCAGGACGCGGTTTACCATGAAGAAGAGCGC
CAGCAGAAGCAGCAGTATCAACGGCGGCGGTGTGATGTGCAGGACCACCA
GTCGAGACGAGGACGGGCAATTGACGGAAGAGGTACGGCGTATTGTCGGT
ATGCGACTCAATTCTCCTCCTTTCCCTTGTCTTTCTCCGCGTCCGCCACA
AACAGCAAAAGCCGAGATGTCAACATCCCAGAGCATCAATGAAGAGGAGG
ATGGGGAGAAGGAAACTGAGGAAAGTGTGCTGCTACTAAGAGATACAAGC
CGGCAATCTAGAGGACTACAGGAGCGCAGTGGCGATTGCGGAGAATCTAC
CCAATCACGATTGAACAGTGAGACATCGGAAATCCTGCTCGAGCTGGTAT
CAGAGGACAGCGTGGAAGTCGTCCCTCCGTGGTGGTCGGAGACTTTCCCC
CACTTAGAAACTTTTACGCTGCGGTGGGAGTCCAAGGCTCTATTCAATCT
GGGTTCAAGCGTCATGGAGATTGTGGCTTCCCTGGGTCAGCAGGCGGCGT
TGGAGGTCCTGACCTTCACGGCGGCGGCCACGCTTGTCTCGGCTCTGGCG
TGGCCTATTACACTCTTGCAAGCGGCTGACATGATTGACAGTACGTGGAC
GTTGGCCTGCGAGAAGGCGGATCGGGCGGGCCAGCTCTTGGCACAGGTAT
TGATGAAGAAGGAGCATGGGCATAGGCCTGTTGTCTTGGTAGGGTTCAGT
ATGGGAGCGCGTGTGATTATGTCTTGCCTGTTGGAACTGGCGAGGGTACA
CAAAGCATGGGAGGTGGACGAGATGAAGCGAAGAGAGCAGCACACATCTA
TGTCGAGCGTTGCATCTCGGGCCTCGCCATCATTGTTTACCCCGACAACA
ACACAGACACAGCCTGTCACTGTGGCGGACTTGGGGAGCCCTGCATCTGG
TTTGGTGCACACGGTCGTATTGATGGGCGCACCAATCTCCTGCAGCGAGT
CGAGCTGGCAAAAGGCGCGTGGCATGGTAGCAGACAGACTTGTGAACTGC
TATTCTCGCAAGGATTGGGTCCTGAAGATCATGTACAGGTACCAGAAGCT
CGTGACAAATGCTGCGGGCATCGCGCCGGTCATCGTCGCCGGCGTGGAGA
ACGTGGATGTCACGGATGTGGTGCCGGGGCACCAGCACTATGCTACGAAA
ATCAAGGATATTCTGCTGCTCGTCGGCCTCGACGATTCCTTCCGCGATTT
AGCGTCTGGGGGGATGGCGAAGAGGGAGGAGGCCAGGGCACGGCGCCGAG
AGGCAGACTCGGAAATTGTTGCCAATGCCGCTAGGGCAGAACAACCGGAG
AAAATGGAAGACAAAGGTAAAGAACAGCAGCACACGGCTAGGAGTGGCAC
AGCAGACGAAGGAACGGGTGTTATCAGGGGGGGGGGAAGAGGGATGCACC
GTAAGTCATGAACAGGTGCACAAATAATTCTGTATCAAGGGCTTTGTTGG
GAGAGAAGAACATTGTAAAAAAAACATGACCA

protein sequence of jgi.p|Nanoce1779_2|592243

>mRNA_5354-protein ID=mRNA_5354-protein|Name=jgi.p|Nanoce1779_2|592243|organism=Nannochloropsis oceanica|type=polypeptide|length=914bp
MVLRMLNKEERVCLLGLVALSLPVHDQALGEYNTQLLRVVSGLLDLKEHH
CHALQPLLHSEGNDLEIRQAQLQAFLKPFVLTGRPEQQKGHTVASAVAAG
RERPDRYDPPQPQQGTQGAHKEWEAKQAQLRYLILRDLLVHLACLSMYDA
RTRRIMVRLALDAFEVEWRDMASIEALTASHLHEIWETSQAKDKVHTGLR
YAKITAAALGGGALLAFTGGLAAPAIGVGLSALSATGAVVAGFTTTASVA
TLFGASGAGLVGFKMKRRTAALSEFQFRHVERSEEEEDSDLGRMAICICI
SGWLLNDESEYDTPFGVEPRNSDVAARLRLFYSLYNPDNVKYAAILATEF
KGREDDLERECLHKYGTSPFDSYDTWSAVGGGSRSTTNTNSSMSIGSSKN
LYKDVSEAEKEEVFRLIASYDKDSVSRITDADARRTRFTMKKSASRSSSI
NGGGVMCRTTSRDEDGQLTEEVRRIVGMRLNSPPFPCLSPRPPQTAKAEM
STSQSINEEEDGEKETEESVLLLRDTSRQSRGLQERSGDCGESTQSRLNS
ETSEILLELVSEDSVEVVPPWWSETFPHLETFTLRWESKALFNLGSSVME
IVASLGQQAALEVLTFTAAATLVSALAWPITLLQAADMIDSTWTLACEKA
DRAGQLLAQVLMKKEHGHRPVVLVGFSMGARVIMSCLLELARVHKAWEVD
EMKRREQHTSMSSVASRASPSLFTPTTTQTQPVTVADLGSPASGLVHTVV
LMGAPISCSESSWQKARGMVADRLVNCYSRKDWVLKIMYRYQKLVTNAAG
IAPVIVAGVENVDVTDVVPGHQHYATKIKDILLLVGLDDSFRDLASGGMA
KREEARARRREADSEIVANAARAEQPEKMEDKGKEQQHTARSGTADEGTG
VIRGGGRGMHRKS*

mRNA from alignment at scaffold_13:226994..229825-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5354 ID=mRNA_5354|Name=jgi.p|Nanoce1779_2|592243|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp|location=Sequence derived from alignment at scaffold_13:226994..229825- (Nannochloropsis oceanica)
AAAAACCACAGGCTCAAAAATGGTACTGAGGATGCTTAATAAAGAGGAGC
GGGTATGTCTACTCGGCCTGGTGGCACTTTCCTTGCCCGTCCACGACCAA
GCCTTGGGGGAGTACAACACGCAACTTTTGCGTGTTGTCTCCGGCCTGTT
GGATCTGAAGGAGCACCATTGCCACGCCCTCCAGCCCTTGCTACACTCGG
AAGGCAACGACTTAGAGATCCGACAAGCACAACTTCAGGCCTTTTTAAAG
CCCTTTGTGCTGACGGGCAGGCCTGAGCAGCAGAAGGGGCACACTGTAGC
ATCAGCAGTAGCCGCGGGACGGGAGCGTCCCGACCGCTATGACCCACCTC
AACCGCAACAAGGGACCCAGGGAGCACACAAAGAATGGGAGGCTAAGCAA
GCACAACTGCGGTACTTGATTTTGCGGGATTTACTAGTTCATTTGGCTTG
CTTGTCTATGTATGATGCACGCACGCGCCGGATCATGGTACGGCTGGCCT
TGGACGCGTTCGAAGTGGAGTGGCGTGACATGGCCAGCATTGAAGCATTA
ACAGCCTCGCACCTCCACGAGATCTGGGAAACATCGCAAGCGAAGGATAA
GGTTCACACTGGTTTACGGTACGCCAAAATCACGGCTGCCGCGTTGGGCG
GTGGGGCCTTACTGGCATTTACGGGTGGGCTAGCGGCTCCTGCGATTGGT
GTAGGTTTGAGCGCTCTAAGCGCCACAGGGGCCGTGGTTGCCGGCTTTAC
CACTACTGCCAGTGTCGCCACGCTTTTTGGAGCGTCAGGCGCGGGTTTGG
TGGGATTCAAAATGAAGAGGCGGACGGCTGCCCTATCAGAATTTCAGTTT
CGGCATGTCGAGCGGAGCGAGGAGGAGGAGGACAGCGACTTGGGGAGGAT
GGCCATTTGCATATGTATTTCTGGGTGGCTGCTCAACGACGAGAGCGAGT
ATGACACTCCCTTCGGCGTCGAGCCGCGAAACTCGGACGTGGCGGCTCGC
CTGCGTTTGTTTTATTCCCTTTACAACCCGGACAATGTCAAGTACGCGGC
GATTTTGGCGACCGAGTTCAAGGGTCGGGAGGACGACCTCGAGCGTGAGT
GCTTGCACAAGTATGGAACGAGCCCCTTTGACAGCTATGACACTTGGAGC
GCAGTCGGGGGTGGCAGCCGTAGCACCACCAACACCAACAGCAGCATGAG
CATTGGCAGCAGCAAGAATCTGTACAAGGACGTGTCAGAAGCGGAGAAGG
AGGAGGTGTTTCGCCTCATTGCTTCCTACGATAAAGACTCTGTCAGCAGA
ATCACCGACGCGGACGCCCGCAGGACGCGGTTTACCATGAAGAAGAGCGC
CAGCAGAAGCAGCAGTATCAACGGCGGCGGTGTGATGTGCAGGACCACCA
GTCGAGACGAGGACGGGCAATTGACGGAAGAGGTACGGCGTATTGTCGGT
ATGCGACTCAATTCTCCTCCTTTCCCTTGTCTTTCTCCGCGTCCGCCACA
AACAGCAAAAGCCGAGATGTCAACATCCCAGAGCATCAATGAAGAGGAGG
ATGGGGAGAAGGAAACTGAGGAAAGTGTGCTGCTACTAAGAGATACAAGC
CGGCAATCTAGAGGACTACAGGAGCGCAGTGGCGATTGCGGAGAATCTAC
CCAATCACGATTGAACAGTGAGACATCGGAAATCCTGCTCGAGCTGGTAT
CAGAGGACAGCGTGGAAGTCGTCCCTCCGTGGTGGTCGGAGACTTTCCCC
CACTTAGAAACTTTTACGCTGCGGTGGGAGTCCAAGGCTCTATTCAATCT
GGGTTCAAGCGTCATGGAGATTGTGGCTTCCCTGGGTCAGCAGGCGGCGT
TGGAGGTCCTGACCTTCACGGCGGCGGCCACGCTTGTCTCGGCTCTGGCG
TGGCCTATTACACTCTTGCAAGCGGCTGACATGATTGACAGTACGTGGAC
GTTGGCCTGCGAGAAGGCGGATCGGGCGGGCCAGCTCTTGGCACAGGTAT
TGATGAAGAAGGAGCATGGGCATAGGCCTGTTGTCTTGGTAGGGTTCAGT
ATGGGAGCGCGTGTGATTATGTCTTGCCTGTTGGAACTGGCGAGGGTACA
CAAAGCATGGGAGGTGGACGAGATGAAGCGAAGAGAGCAGCACACATCTA
TGTCGAGCGTTGCATCTCGGGCCTCGCCATCATTGTTTACCCCGACAACA
ACACAGACACAGCCTGTCACTGTGGCGGACTTGGGGAGCCCTGCATCTGG
TTTGGTGCACACGGTCGTATTGATGGGCGCACCAATCTCCTGCAGCGAGT
CGAGCTGGCAAAAGGCGCGTGGCATGGTAGCAGACAGACTTGTGAACTGC
TATTCTCGCAAGGATTGGGTCCTGAAGATCATGTACAGGTACCAGAAGCT
CGTGACAAATGCTGCGGGCATCGCGCCGGTCATCGTCGCCGGCGTGGAGA
ACGTGGATGTCACGGATGTGGTGCCGGGGCACCAGCACTATGCTACGAAA
ATCAAGGATATTCTGCTGCTCGTCGGCCTCGACGATTCCTTCCGCGATTT
AGCGTCTGGGGGGATGGCGAAGAGGGAGGAGGCCAGGGCACGGCGCCGAG
AGGCAGACTCGGAAATTGTTGCCAATGCCGCTAGGGCAGAACAACCGGAG
AAAATGGAAGACAAAGGTAAAGAACAGCAGCACACGGCTAGGAGTGGCAC
AGCAGACGAAGGAACGGGTGTTATCAGGGGGGGGGGAAGAGGGATGCACC
GTAAGTCATGAACAGGTGCACAAATAATTCTGTATCAAGGGCTTTGTTGG
GAGAGAAGAACATTGTAAAAAAAACATGACCA

Coding sequence (CDS) from alignment at scaffold_13:226994..229825-

>mRNA_5354 ID=mRNA_5354|Name=jgi.p|Nanoce1779_2|592243|organism=Nannochloropsis oceanica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_13:226994..229825- (Nannochloropsis oceanica)
ATGGTACTGAGGATGCTTAATAAAGAGGAGCGGGTATGTCTACTCGGCCT
GGTGGCACTTTCCTTGCCCGTCCACGACCAAGCCTTGGGGGAGTACAACA
CGCAACTTTTGCGTGTTGTCTCCGGCCTGTTGGATCTGAAGGAGCACCAT
TGCCACGCCCTCCAGCCCTTGCTACACTCGGAAGGCAACGACTTAGAGAT
CCGACAAGCACAACTTCAGGCCTTTTTAAAGCCCTTTGTGCTGACGGGCA
GGCCTGAGCAGCAGAAGGGGCACACTGTAGCATCAGCAGTAGCCGCGGGA
CGGGAGCGTCCCGACCGCTATGACCCACCTCAACCGCAACAAGGGACCCA
GGGAGCACACAAAGAATGGGAGGCTAAGCAAGCACAACTGCGGTACTTGA
TTTTGCGGGATTTACTAGTTCATTTGGCTTGCTTGTCTATGTATGATGCA
CGCACGCGCCGGATCATGGTACGGCTGGCCTTGGACGCGTTCGAAGTGGA
GTGGCGTGACATGGCCAGCATTGAAGCATTAACAGCCTCGCACCTCCACG
AGATCTGGGAAACATCGCAAGCGAAGGATAAGGTTCACACTGGTTTACGG
TACGCCAAAATCACGGCTGCCGCGTTGGGCGGTGGGGCCTTACTGGCATT
TACGGGTGGGCTAGCGGCTCCTGCGATTGGTGTAGGTTTGAGCGCTCTAA
GCGCCACAGGGGCCGTGGTTGCCGGCTTTACCACTACTGCCAGTGTCGCC
ACGCTTTTTGGAGCGTCAGGCGCGGGTTTGGTGGGATTCAAAATGAAGAG
GCGGACGGCTGCCCTATCAGAATTTCAGTTTCGGCATGTCGAGCGGAGCG
AGGAGGAGGAGGACAGCGACTTGGGGAGGATGGCCATTTGCATATGTATT
TCTGGGTGGCTGCTCAACGACGAGAGCGAGTATGACACTCCCTTCGGCGT
CGAGCCGCGAAACTCGGACGTGGCGGCTCGCCTGCGTTTGTTTTATTCCC
TTTACAACCCGGACAATGTCAAGTACGCGGCGATTTTGGCGACCGAGTTC
AAGGGTCGGGAGGACGACCTCGAGCGTGAGTGCTTGCACAAGTATGGAAC
GAGCCCCTTTGACAGCTATGACACTTGGAGCGCAGTCGGGGGTGGCAGCC
GTAGCACCACCAACACCAACAGCAGCATGAGCATTGGCAGCAGCAAGAAT
CTGTACAAGGACGTGTCAGAAGCGGAGAAGGAGGAGGTGTTTCGCCTCAT
TGCTTCCTACGATAAAGACTCTGTCAGCAGAATCACCGACGCGGACGCCC
GCAGGACGCGGTTTACCATGAAGAAGAGCGCCAGCAGAAGCAGCAGTATC
AACGGCGGCGGTGTGATGTGCAGGACCACCAGTCGAGACGAGGACGGGCA
ATTGACGGAAGAGGTACGGCGTATTGTCGGTATGCGACTCAATTCTCCTC
CTTTCCCTTGTCTTTCTCCGCGTCCGCCACAAACAGCAAAAGCCGAGATG
TCAACATCCCAGAGCATCAATGAAGAGGAGGATGGGGAGAAGGAAACTGA
GGAAAGTGTGCTGCTACTAAGAGATACAAGCCGGCAATCTAGAGGACTAC
AGGAGCGCAGTGGCGATTGCGGAGAATCTACCCAATCACGATTGAACAGT
GAGACATCGGAAATCCTGCTCGAGCTGGTATCAGAGGACAGCGTGGAAGT
CGTCCCTCCGTGGTGGTCGGAGACTTTCCCCCACTTAGAAACTTTTACGC
TGCGGTGGGAGTCCAAGGCTCTATTCAATCTGGGTTCAAGCGTCATGGAG
ATTGTGGCTTCCCTGGGTCAGCAGGCGGCGTTGGAGGTCCTGACCTTCAC
GGCGGCGGCCACGCTTGTCTCGGCTCTGGCGTGGCCTATTACACTCTTGC
AAGCGGCTGACATGATTGACAGTACGTGGACGTTGGCCTGCGAGAAGGCG
GATCGGGCGGGCCAGCTCTTGGCACAGGTATTGATGAAGAAGGAGCATGG
GCATAGGCCTGTTGTCTTGGTAGGGTTCAGTATGGGAGCGCGTGTGATTA
TGTCTTGCCTGTTGGAACTGGCGAGGGTACACAAAGCATGGGAGGTGGAC
GAGATGAAGCGAAGAGAGCAGCACACATCTATGTCGAGCGTTGCATCTCG
GGCCTCGCCATCATTGTTTACCCCGACAACAACACAGACACAGCCTGTCA
CTGTGGCGGACTTGGGGAGCCCTGCATCTGGTTTGGTGCACACGGTCGTA
TTGATGGGCGCACCAATCTCCTGCAGCGAGTCGAGCTGGCAAAAGGCGCG
TGGCATGGTAGCAGACAGACTTGTGAACTGCTATTCTCGCAAGGATTGGG
TCCTGAAGATCATGTACAGGTACCAGAAGCTCGTGACAAATGCTGCGGGC
ATCGCGCCGGTCATCGTCGCCGGCGTGGAGAACGTGGATGTCACGGATGT
GGTGCCGGGGCACCAGCACTATGCTACGAAAATCAAGGATATTCTGCTGC
TCGTCGGCCTCGACGATTCCTTCCGCGATTTAGCGTCTGGGGGGATGGCG
AAGAGGGAGGAGGCCAGGGCACGGCGCCGAGAGGCAGACTCGGAAATTGT
TGCCAATGCCGCTAGGGCAGAACAACCGGAGAAAATGGAAGACAAAGGTA
AAGAACAGCAGCACACGGCTAGGAGTGGCACAGCAGACGAAGGAACGGGT
GTTATCAGGGGGGGGGGAAGAGGGATGCACCGTAAGTCATGA

Synonyms

Publications