jgi.p|Nanoce1779_2|64106, mRNA_5352 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|64106
Unique NamemRNA_5352
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1532
Alignment locationscaffold_13:223172..224967 -

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Properties
Property NameValue
TranscriptId64192
TrackFilteredModels2
ProteinId64106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:223172..224967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|64106gene_5352Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|64106mRNA_5352-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5352CDS_5352Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5352 ID=mRNA_5352|Name=jgi.p|Nanoce1779_2|64106|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
TATTGTTGGAAATGATCAGAAAGGCTTGAGTAAAGCACAGGGATTATCGG
CATATTTTCTGGTATGACGTGGCGGCGGCATCGACAGGCTTTTTTTTCCC
TGTCCATCCTCTTCCTCCAACTCGACTCCACCCAAGCCCTTTCGACTGCT
CCTCGGACACCACCATTGAAGCAGTACTTTGCACCATGCTCGGGCGGGCT
GTCCAATATTTTGGGTCAAGAACTACTGGGTCGGCAGATTGGGGTGGAAA
AAATCGACGTACAAAAAAGGGGATGTGCATTTCTCGCTACAGAGGAAGCT
GCATACAGGGCCTTGCTCTGGAGCCGCACCGCCAACGGAATATGGCAGCT
CATGGTGAGACAACGCGGGGTGCAGAGCCGGGATGATCTGTATGGTATGG
CACGGAGAGTGGAGTGGCCAGAGGCGATGAGTGTAGACGACTCTCTGGCT
GTGCAGTGCGTCATAGGGGGAGGCGAAATTTCGCAGGACATCACCCACAC
CCACTACTCCTCTCTCACGATCAAGAACGCCGTGGTCGACAACTTCCGTG
AACGTACAGGTGGGAAAAGACCAAATGTCGACGCCGAAGACCCCGTCCTC
CCCCTCGTCCTCTTCCTGCAAAATGATGAAGCCTGGCTCTATCGTTCCCT
AAGCGGCACCTCCTCCCTCCACAAGCGAGGCTACCGTCAACAAATGCACA
AGTCCTCTCTCCGGGAAACCACTGCTGCGGCCCTACTCCTTCTCGCAGGG
TATGAGCCAATAGATCATATTTTGGTCGATCCTATGTGTGGTTCTGGCAC
TATAGCAATCGAAGCCGCCCTTATCGCACGTCAAATCGCTCCCGGCCTCC
TCCGCCTGAAGCGTGAACGTGACCTCTCCGTCCTCACACCCTCCCGGTGG
CCCGACACCGACCAAGCCCTCCTTAGGAAGGTCGTTCTGGAAGCTATTAA
AAAAGAGCTACCACAGGCCCCACTCCCAATATTTGCCAATGACTGGCATC
CTGCTGCAATTGAACTTGCAAAACGCGATGCTGGCACGGCGGGTGTCTTC
CACGACTTGACCTTCAGCAACGAAGACGTCATGGATCTGCATTTGAAATT
ACAAGCAGAAGACCAAACAACGAACAAGATCGTGATATGTAACCCTCCGT
GGGATCTGCGTTTAAATGGAGGGGCAGCGGAAAGTTGGGAGAAGCTTGGG
AGGTTCCTGAAGAGGGAGGCGGGGGATGGCGATGCTTTCCTTCTGTCTGG
AAACCCGGATGTGACCCGAAAATTGTGCATGAAGCGCAACCAGCACAGAA
GGCCTCGTCCTCTCTCTCGTCCCCACCAACCCGTCAATCAGGGCCGGGAG
CAAATGATTGCGGAACTGGTTTCACCACCATGATGTTGGCTGCAACAGCA
GCTACACCCTTTCCTCCCTCTTTCCCCTCCTCCGCGTCCCCCTCCTCCTC
GCTCTCGTCTTCTCACTCCATTTCCCGCAAAGAAGCAATGATGACAGTCA
CCTCCTTCACCATGCTAATGATGGGTGCCGTT
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protein sequence of jgi.p|Nanoce1779_2|64106

>mRNA_5352-protein ID=mRNA_5352-protein|Name=jgi.p|Nanoce1779_2|64106|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MTWRRHRQAFFSLSILFLQLDSTQALSTAPRTPPLKQYFAPCSGGLSNIL
GQELLGRQIGVEKIDVQKRGCAFLATEEAAYRALLWSRTANGIWQLMVRQ
RGVQSRDDLYGMARRVEWPEAMSVDDSLAVQCVIGGGEISQDITHTHYSS
LTIKNAVVDNFRERTGGKRPNVDAEDPVLPLVLFLQNDEAWLYRSLSGTS
SLHKRGYRQQMHKSSLRETTAAALLLLAGYEPIDHILVDPMCGSGTIAIE
AALIARQIAPGLLRLKRERDLSVLTPSRWPDTDQALLRKVVLEAIKKELP
QAPLPIFANDWHPAAIELAKRDAGTAGVFHDLTFSNEDVMDLHLKLQAED
QTTNKIVICNPPWDLRLNGGAAESWEKLGRFLKREAGDGDAFLLSGNPDV
TRKLCMKRNQHRRPRPLSRPHQPVNQGREQMIAELVSPP*
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mRNA from alignment at scaffold_13:223172..224967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5352 ID=mRNA_5352|Name=jgi.p|Nanoce1779_2|64106|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp|location=Sequence derived from alignment at scaffold_13:223172..224967- (Nannochloropsis oceanica)
TATTGTTGGAAATGATCAGAAAGTGAGCAGTGACCAGCTAGAGACACGAC
TTGCAGCCGCCCATCTGCTTCAACCATCGCTCCAGCCTCACTACCCACTA
TCCATCCCCACCGCACACAGGGCTTGAGTAAAGCACAGGGATTATCGGCA
TATTTTCTGGTATGACGTGGCGGCGGCATCGACAGGCTTTTTTTTCCCTG
TCCATCCTCTTCCTCCAACTCGACTCCACCCAAGCCCTTTCGACTGCTCC
TCGGACACCACCATTGAAGCAGTACTTTGCACCATGCTCGGGCGGGCTGT
CCAATATTTTGGGTCAAGAACTACTGGGTCGGCAGATTGGGGTGGAAAAA
ATCGACGTACAAAAAAGGGGATGTGCATTTCTCGCTACAGAGGAAGCTGC
ATACAGGGCCTTGCTCTGGAGCCGCACCGCCAACGGAATATGGCAGCTCA
TGGTGAGACAACGCGGGGTGCAGAGCCGGGATGATCTGTATGGTATGGCA
CGGAGAGTGGAGTGGCCAGAGGCGATGAGTGTAGACGACTCTCTGGCTGT
GCAGTGCGTCATAGGGGGAGGCGAAATTTCGCAGGACATCACCCACACCC
ACTACTCCTCTCTCACGATCAAGAACGCCGTGGTCGACAACTTCCGTGAA
CGTACAGGTGGGAAAAGACCAAATGTCGACGCCGAAGACCCCGTCCTCCC
CCTCGTCCTCTTCCTGCAAAATGATGAAGCCTGGCTCTATCGTTCCCTAA
GCGGCACCTCCTCCCTCCACAAGCGAGGCTACCGTCAACAAATGCACAAG
TCCTCTCTCCGGGAAACCACTGCTGCGGCCCTACTCCTTCTCGCAGGGTA
TGAGCCAATAGATCATATTTTGGTCGATCCTATGTGTGGTTCTGGCACTA
TAGCAATCGAAGCCGCCCTTATCGCACGTCAAATCGCTCCCGGCCTCCTC
CGCCTGAAGCGTGAACGTGACCTCTCCGTCCTCACACCCTCCCGGTGGCC
CGACACCGACCAAGCCCTCCTTAGGAAGGTCGTTCTGGAAGCTATTAAAA
AAGAGCTACCACAGGCCCCACTCCCAATATTTGCCAATGACTGGCATCCT
GCTGCAATTGAACTTGCAAAACGCGATGCTGGCACGGCGGGTGTCTTCCA
CGACTTGACCTTCAGCAACGAAGACGTCATGGATCTGCATTTGAAATTAC
AAGCAGAAGACCAAACAACGAACAAGATCGTGATATGTAACCCTCCGTGG
GATCTGCGTTTAAATGGAGGGGCAGCGGAAAGTTGGGAGAAGCTTGGGAG
GTTCCTGAAGAGGGAGGCGGGGGATGGCGATGCTTTCCTTCTGTCTGGAA
ACCCGGATGTGACCCGAAAATTGTGCATGAAGGTAACGATGAAGATCCCA
ATTGATCAGGCGGGGATGAGTTTGAGATTATTGCATTATCATGTGTTGCC
TCCCAAACCACCACGTATGGACGGGGAGGAGGAGGAGGACGGCGGGAGGG
AGAGTGATAGAAGGGGGGGAGGTCTCAACTCTGCCCCCCCCTCACCAGCG
CAACCAGCACAGAAGGCCTCGTCCTCTCTCTCGTCCCCACCAACCCGTCA
ATCAGGGCCGGGAGCAAATGATTGCGGAACTGGTTTCACCACCATGATGT
TGGCTGCAACAGCAGCTACACCCTTTCCTCCCTCTTTCCCCTCCTCCGCG
TCCCCCTCCTCCTCGCTCTCGTCTTCTCACTCCATTTCCCGCAAAGAAGC
AATGATGACAGTCACCTCCTTCACCATGCTAATGATGGGTGCCGTT
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Coding sequence (CDS) from alignment at scaffold_13:223172..224967-

>mRNA_5352 ID=mRNA_5352|Name=jgi.p|Nanoce1779_2|64106|organism=Nannochloropsis oceanica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_13:223172..224967- (Nannochloropsis oceanica)
CGCAACCAGCACAGAAGGCCTCGTCCTCTCTCTCGTCCCCACCAACCCGT
CAATCAGGGCCGGGAGCAAATGATTGCGGAACTGGTTTCACCACCATGAA
TGACGTGGCGGCGGCATCGACAGGCTTTTTTTTCCCTGTCCATCCTCTTC
CTCCAACTCGACTCCACCCAAGCCCTTTCGACTGCTCCTCGGACACCACC
ATTGAAGCAGTACTTTGCACCATGCTCGGGCGGGCTGTCCAATATTTTGG
GTCAAGAACTACTGGGTCGGCAGATTGGGGTGGAAAAAATCGACGTACAA
AAAAGGGGATGTGCATTTCTCGCTACAGAGGAAGCTGCATACAGGGCCTT
GCTCTGGAGCCGCACCGCCAACGGAATATGGCAGCTCATGGTGAGACAAC
GCGGGGTGCAGAGCCGGGATGATCTGTATGGTATGGCACGGAGAGTGGAG
TGGCCAGAGGCGATGAGTGTAGACGACTCTCTGGCTGTGCAGTGCGTCAT
AGGGGGAGGCGAAATTTCGCAGGACATCACCCACACCCACTACTCCTCTC
TCACGATCAAGAACGCCGTGGTCGACAACTTCCGTGAACGTACAGGTGGG
AAAAGACCAAATGTCGACGCCGAAGACCCCGTCCTCCCCCTCGTCCTCTT
CCTGCAAAATGATGAAGCCTGGCTCTATCGTTCCCTAAGCGGCACCTCCT
CCCTCCACAAGCGAGGCTACCGTCAACAAATGCACAAGTCCTCTCTCCGG
GAAACCACTGCTGCGGCCCTACTCCTTCTCGCAGGGTATGAGCCAATAGA
TCATATTTTGGTCGATCCTATGTGTGGTTCTGGCACTATAGCAATCGAAG
CCGCCCTTATCGCACGTCAAATCGCTCCCGGCCTCCTCCGCCTGAAGCGT
GAACGTGACCTCTCCGTCCTCACACCCTCCCGGTGGCCCGACACCGACCA
AGCCCTCCTTAGGAAGGTCGTTCTGGAAGCTATTAAAAAAGAGCTACCAC
AGGCCCCACTCCCAATATTTGCCAATGACTGGCATCCTGCTGCAATTGAA
CTTGCAAAACGCGATGCTGGCACGGCGGGTGTCTTCCACGACTTGACCTT
CAGCAACGAAGACGTCATGGATCTGCATTTGAAATTACAAGCAGAAGACC
AAACAACGAACAAGATCGTGATATGTAACCCTCCGTGGGATCTGCGTTTA
AATGGAGGGGCAGCGGAAAGTTGGGAGAAGCTTGGGAGGTTCCTGAAGAG
GGAGGCGGGGGATGGCGATGCTTTCCTTCTGTCTGGAAACCCGGATGTGA
CCCGAAAATTGTGCATGAAGCGCAACCAGCACAGAAGGCCTCGTCCTCTC
TCTCGTCCCCACCAACCCGTCAATCAGGGCCGGGAGCAAATGATTGCGGA
ACTGGTTTCACCACCATGAATGACGTGGCGGCGGCATCGACAGGCTTTTT
TTTCCCTGTCCATCCTCTTCCTCCAACTCGACTCCACCCAAGCCCTTTCG
ACTGCTCCTCGGACACCACCATTGAAGCAGTACTTTGCACCATGCTCGGG
CGGGCTGTCCAATATTTTGGGTCAAGAACTACTGGGTCGGCAGATTGGGG
TGGAAAAAATCGACGTACAAAAAAGGGGATGTGCATTTCTCGCTACAGAG
GAAGCTGCATACAGGGCCTTGCTCTGGAGCCGCACCGCCAACGGAATATG
GCAGCTCATGGTGAGACAACGCGGGGTGCAGAGCCGGGATGATCTGTATG
GTATGGCACGGAGAGTGGAGTGGCCAGAGGCGATGAGTGTAGACGACTCT
CTGGCTGTGCAGTGCGTCATAGGGGGAGGCGAAATTTCGCAGGACATCAC
CCACACCCACTACTCCTCTCTCACGATCAAGAACGCCGTGGTCGACAACT
TCCGTGAACGTACAGGTGGGAAAAGACCAAATGTCGACGCCGAAGACCCC
GTCCTCCCCCTCGTCCTCTTCCTGCAAAATGATGAAGCCTGGCTCTATCG
TTCCCTAAGCGGCACCTCCTCCCTCCACAAGCGAGGCTACCGTCAACAAA
TGCACAAGTCCTCTCTCCGGGAAACCACTGCTGCGGCCCTACTCCTTCTC
GCAGGGTATGAGCCAATAGATCATATTTTGGTCGATCCTATGTGTGGTTC
TGGCACTATAGCAATCGAAGCCGCCCTTATCGCACGTCAAATCGCTCCCG
GCCTCCTCCGCCTGAAGCGTGAACGTGACCTCTCCGTCCTCACACCCTCC
CGGTGGCCCGACACCGACCAAGCCCTCCTTAGGAAGGTCGTTCTGGAAGC
TATTAAAAAAGAGCTACCACAGGCCCCACTCCCAATATTTGCCAATGACT
GGCATCCTGCTGCAATTGAACTTGCAAAACGCGATGCTGGCACGGCGGGT
GTCTTCCACGACTTGACCTTCAGCAACGAAGACGTCATGGATCTGCATTT
GAAATTACAAGCAGAAGACCAAACAACGAACAAGATCGTGATATGTAACC
CTCCGTGGGATCTGCGTTTAAATGGAGGGGCAGCGGAAAGTTGGGAGAAG
CTTGGGAGGTTCCTGAAGAGGGAGGCGGGGGATGGCGATGCTTTCCTTCT
GTCTGGAAACCCGGATGTGACCCGAAAATTGTGCATGAAG
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Synonyms
Publications