jgi.p|Nanoce1779_2|592233, mRNA_5351 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592233
Unique NamemRNA_5351
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length908
Alignment locationscaffold_13:222266..223173 -

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Properties
Property NameValue
TranscriptId592319
TrackFilteredModels2
ProteinId592233
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:222266..223173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592233gene_5351Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592233mRNA_5351-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5351CDS_5351Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5351 ID=mRNA_5351|Name=jgi.p|Nanoce1779_2|592233|organism=Nannochloropsis oceanica|type=mRNA|length=908bp
TTCTCGGTGCCGGGGCATGGCAACGCCCCAAACAAACAGCTGCAGTCGCA
GTTGCGGGAACTCCTCTCCACTCTTTCTCAATAAGAAATTCCTACGATTC
ATACGCTGCCAACTACGACGACTTAGATGGAGGAAGTGCAGCTCGCTGGC
TCGGGCTGGAAGCAGCCCGTCAAGAGCTCATCGGACGCGCGCACGGCCGG
GTGTTGGAATGTGGGGTCGGTACAGGTCTCAATTTTCCATTTTACAAATT
CCAGAAAGATGGAAACCTAGTGGCATTGGATGCGATTGATCTGAGCCCGG
GAATGCTGCGGGAAGCAAGGGCCAAGGCCGCATTGTTAGGGTTGGGGGAA
GAGAGGGTGCGTTTTCACGAGATGGATGTGGCCAACTTGGTATTTGCGGA
TGGAAGCTTTGACTATGTGTGTGACACCTTTTCACTGTGCGTGTACCCAG
ATCCATTGAAAGCTTTAAAAGAGATGACAAGGGTGTGTAAACCTGGTGTA
GGACGGGTGTTGCTCTTGGAGAATAGCCGGAGCGACCTACAAATATTGGC
GGCGTATCAAGATGCTACTGCCCATGTGGTGGCCCGCATTGGTGGCAAAT
CATGCGTGTACAACCAGGACGTACCCAAGCTCGCACAAGCAGCGGGGTTG
CAAGTGGTGCGGAGGGAAAAAATTGCGGGGGGACTCTTTACGATGTTGGA
GTGTACGCGCAGGCTTTGAAAAGGGTTTGGTGGGAGGCAGGAAAGGATAG
AGGGATGGAGGTTATACACAGGTCGGCAAGCGCTCGGATAAAGTGCAATT
GACGCACAAAGCAGAGAGTATTTGAACAAATGCATGGCTTGAAATGTTGA
AAAATATAAATGTAAACTTTACACTGGAAAAAATGAAGAAAAAAACATCC
CCGTGCTT
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protein sequence of jgi.p|Nanoce1779_2|592233

>mRNA_5351-protein ID=mRNA_5351-protein|Name=jgi.p|Nanoce1779_2|592233|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MLREARAKAALLGLGEERVRFHEMDVANLVFADGSFDYVCDTFSLCVYPD
PLKALKEMTRVCKPGVGRVLLLENSRSDLQILAAYQDATAHVVARIGGKS
CVYNQDVPKLAQAAGLQVVRREKIAGGLFTMLECTRRL*
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mRNA from alignment at scaffold_13:222266..223173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5351 ID=mRNA_5351|Name=jgi.p|Nanoce1779_2|592233|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_13:222266..223173- (Nannochloropsis oceanica)
TTCTCGGTGCCGGGGCATGGCAACGCCCCAAACAAACAGCTGCAGTCGCA
GTTGCGGGAACTCCTCTCCACTCTTTCTCAATAAGAAATTCCTACGATTC
ATACGCTGCCAACTACGACGACTTAGATGGAGGAAGTGCAGCTCGCTGGC
TCGGGCTGGAAGCAGCCCGTCAAGAGCTCATCGGACGCGCGCACGGCCGG
GTGTTGGAATGTGGGGTCGGTACAGGTCTCAATTTTCCATTTTACAAATT
CCAGAAAGATGGAAACCTAGTGGCATTGGATGCGATTGATCTGAGCCCGG
GAATGCTGCGGGAAGCAAGGGCCAAGGCCGCATTGTTAGGGTTGGGGGAA
GAGAGGGTGCGTTTTCACGAGATGGATGTGGCCAACTTGGTATTTGCGGA
TGGAAGCTTTGACTATGTGTGTGACACCTTTTCACTGTGCGTGTACCCAG
ATCCATTGAAAGCTTTAAAAGAGATGACAAGGGTGTGTAAACCTGGTGTA
GGACGGGTGTTGCTCTTGGAGAATAGCCGGAGCGACCTACAAATATTGGC
GGCGTATCAAGATGCTACTGCCCATGTGGTGGCCCGCATTGGTGGCAAAT
CATGCGTGTACAACCAGGACGTACCCAAGCTCGCACAAGCAGCGGGGTTG
CAAGTGGTGCGGAGGGAAAAAATTGCGGGGGGACTCTTTACGATGTTGGA
GTGTACGCGCAGGCTTTGAAAAGGGTTTGGTGGGAGGCAGGAAAGGATAG
AGGGATGGAGGTTATACACAGGTCGGCAAGCGCTCGGATAAAGTGCAATT
GACGCACAAAGCAGAGAGTATTTGAACAAATGCATGGCTTGAAATGTTGA
AAAATATAAATGTAAACTTTACACTGGAAAAAATGAAGAAAAAAACATCC
CCGTGCTT
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Coding sequence (CDS) from alignment at scaffold_13:222266..223173-

>mRNA_5351 ID=mRNA_5351|Name=jgi.p|Nanoce1779_2|592233|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_13:222266..223173- (Nannochloropsis oceanica)
ATGCTGCGGGAAGCAAGGGCCAAGGCCGCATTGTTAGGGTTGGGGGAAGA
GAGGGTGCGTTTTCACGAGATGGATGTGGCCAACTTGGTATTTGCGGATG
GAAGCTTTGACTATGTGTGTGACACCTTTTCACTGTGCGTGTACCCAGAT
CCATTGAAAGCTTTAAAAGAGATGACAAGGGTGTGTAAACCTGGTGTAGG
ACGGGTGTTGCTCTTGGAGAATAGCCGGAGCGACCTACAAATATTGGCGG
CGTATCAAGATGCTACTGCCCATGTGGTGGCCCGCATTGGTGGCAAATCA
TGCGTGTACAACCAGGACGTACCCAAGCTCGCACAAGCAGCGGGGTTGCA
AGTGGTGCGGAGGGAAAAAATTGCGGGGGGACTCTTTACGATGTTGGAGT
GTACGCGCAGGCTTTGA
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Synonyms
Publications