jgi.p|Nanoce1779_2|592230, mRNA_5350 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592230
Unique NamemRNA_5350
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length863
Alignment locationscaffold_13:221216..222165 -

Link to JBrowse

Properties
Property NameValue
TranscriptId592316
TrackFilteredModels2
ProteinId592230
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:221216..222165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592230gene_5350Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592230mRNA_5350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5350CDS_5350Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5350 ID=mRNA_5350|Name=jgi.p|Nanoce1779_2|592230|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
AGACAGCCTTCAGAATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCG
ACAAGTCGGCAGCAGCAGGAAAAGGCAAACAAGGCCTCTTCAGAAGAACA
ACAGAGCGGGGAGAAAATGGCACCACACGCTGAGGGAATTGAGGAAGGAG
AATCGGAAGACGACGACATAATCCGCCTGGATTCGGTGCCTCCATCTAGC
CTCACAGGCCCCCCCATGGCACCCAAACAACGCCAGCTCATGCAAGATGC
TTCACGAATGGGCAATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCT
ATTTCCGTTTCGAAAAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCA
AATGCAAAAGTGATGACGGCCCAAATGCTATCAGCCCTCAAACACAAGGC
CGGCACCGCCGCACCAAAGCCACGACAAGCACTTATCAACAGTGCCGCTG
GCTGCTACAGCAAGAAGGGCAATACATCAGGGGCACGAGTCACACAGGGA
GTATACGAGCGGGACAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGAT
GCGAAATTATATTGATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGG
CACCTGACTTTCAGATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTC
AATGGGCGATTGCCCAGGCGCCAACGGAAGCGGACATTTGTGGATGAGAT
TTTGGCGGATCGCGGGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGA
TTCAAGAGGCAAATAAGTCAGGACGGAAAGGCCAATACGAAGCCCGGCAG
CTAAAAAACAAACCCAAGTAGGCGGGCTAGGAGACTGGAAAGAAGAAATA
AAGTGTGCATACA
back to top

protein sequence of jgi.p|Nanoce1779_2|592230

>mRNA_5350-protein ID=mRNA_5350-protein|Name=jgi.p|Nanoce1779_2|592230|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MVGTGRKAAASSTSRQQQEKANKASSEEQQSGEKMAPHAEGIEEGESEDD
DIIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFE
KVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK
KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQ
IGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEAN
KSGRKGQYEARQLKNKPK*
back to top

mRNA from alignment at scaffold_13:221216..222165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5350 ID=mRNA_5350|Name=jgi.p|Nanoce1779_2|592230|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_13:221216..222165- (Nannochloropsis oceanica)
AGACAGCCTTCAGAATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCG
ACAAGTCGGCAGCAGCAGGAAAAGGTGCGTGATGATGAAGATATCATCGA
CTGGCTGGCCGAGACACCCTCTCAACCCTCGGCTTTTTACACACACACCA
ACACACTCCAGGCAAACAAGGCCTCTTCAGAAGAACAACAGAGCGGGGAG
AAAATGGCACCACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGA
CGACATAATCCGCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCC
CCATGGCACCCAAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGC
AATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGA
AAAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGA
TGACGGCCCAAATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCA
CCAAAGCCACGACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAA
GAAGGGCAATACATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGG
ACAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATT
GATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCA
GATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGC
CCAGGCGCCAACGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGC
GGGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAA
TAAGTCAGGACGGAAAGGCCAATACGAAGCCCGGCAGCTAAAAAACAAAC
CCAAGTAGGCGGGCTAGGAGACTGGAAAGAAGAAATAAAGTGTGCATACA
back to top

Coding sequence (CDS) from alignment at scaffold_13:221216..222165-

>mRNA_5350 ID=mRNA_5350|Name=jgi.p|Nanoce1779_2|592230|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_13:221216..222165- (Nannochloropsis oceanica)
GCAAACAAGGCCTCTTCAGAAGAACAACAGAGCGGGGAGAAAATGGCACC
ACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGACGACATAATCC
GCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCCCCATGGCACCC
AAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGCAATGTGCGCTT
TGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGAAAAGGTTGGCA
AGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGATGACGGCCCAA
ATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCACCAAAGCCACG
ACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAAGAAGGGCAATA
CATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGGACAAGGAACGG
GAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATTGATCCGAAGCG
TTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCAGATTGGTACTG
TCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGCCCAGGCGCCAA
CGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGCGGGGTGAGATC
ATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAATAAGTCAGGAC
GGAAAGGCCAATACGAAGCCCGGCAGCTAAAAAACAAACCCAAGTAGATG
GTGGGCACGGGACGCAAGGCGGCGGCCTCCTCGACAAGTCGGCAGCAGCA
GGAAAAGGCAAACAAGGCCTCTTCAGAAGAACAACAGAGCGGGGAGAAAA
TGGCACCACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGACGAC
ATAATCCGCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCCCCAT
GGCACCCAAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGCAATG
TGCGCTTTGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGAAAAG
GTTGGCAAGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGATGAC
GGCCCAAATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCACCAA
AGCCACGACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAAGAAG
GGCAATACATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGGACAA
GGAACGGGAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATTGATC
CGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCAGATT
GGTACTGTCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGCCCAG
GCGCCAACGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGCGGGG
TGAGATCATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAATAAG
TCAGGACGGAAAGGCCAATACGAAGCCCGGCAGCTAAAAAACAAACCCAA
GTAGATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCGACAAGTCGGC
AGCAGCAGGAAAAG
back to top
Synonyms
Publications