jgi.p|Nanoce1779_2|244647, mRNA_535 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|244647
Unique Name	mRNA_535
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1541
Alignment location	scaffold_3:1292995..1294920 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	244733
Track	FilteredModels2
ProteinId	244647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1292995..1294920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|244647	gene_535	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|244647	mRNA_535-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_535	CDS_535	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1292995..1294920+
coding sequence from alignment at scaffold_3:1292995..1294920+

mRNA sequence

>mRNA_535 ID=mRNA_535|Name=jgi.p|Nanoce1779_2|244647|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
GGGGGGGAGGTCGAGGTCAAGAGTTGCTTTCTGGGATGGGTTTGGAAGCT
TACTCCACTGCCACGACGCACCGCCACAGTTATGTTACATGTTCTTTACT
GCCAGTATTCTCTATCCATCTGACCAGTCTGTGCGGGATTAGGCCCTTTA
GGGATAGCAAAAGCTGCCCATCTCAATCAGTAGCATCCCTCTCCTTCCTT
CCTCAACACCATCCATGCTTGAACGACACGCACGACGCCCTCATAATTCA
ACCACACAACACTCCCATATGAACGAACAATCATATATAATACGCACATA
CATCTCTACAGCGTGCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCA
ACGACTCGTCCACCGAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCA
CGTCGCTTCACCCTCGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCA
CCTCGAGCTGGAAGAGCCGGCATTGGATGCGCTTCCTGCACTTTCCCCTA
ATGCTGCACCGGCCCCTCCTATTTTACCACCATTACCTTCAGACGGAGAT
GGAGAGCTTCTCACCATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACT
CGCCTCCCTAGTCCAAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAA
TCCTTGCTTCCCTCTTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCAC
AAATCCCACGAAGCCGACAATCTTCTCTCCGTCCTCCACCACCACCTTCC
CCCCTCCTCCCTCCCCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGG
GAACATTCGCACACACGGGGCCTGCAGGCTTACGTGCTTATGCCCTGACC
AATCTGTTGTCTGAGGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCT
GCATGCTTGCGTGGAGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGC
CACACCGGGGACAGGTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAA
GGGTCGATGCTGGTCAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGG
AAGAAGGGGAGGAGGGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGC
GATGTATTCCCCAGGTCCACGGTCCCTGTCGAGACATCATCGAAGGGAGC
GTCAAGGCCTTAGAGCTGGAGCTAAATAGCGCCGAGTCTGCCGTGCCCAA
TGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACC
CGGCGCAAGTGGCAGCGGTGTCGGATAATTTGCGGGTAAGGAGGAAGGGA
GGAAGGGAGGAAGGAAGGAAAGGAGGGTTTTTCGTCGTTCTTCGAATGAC
AGCAGCGACTCGCCGTCTTTGAGGGTAACAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGAGTTCCAAGGACACAAATTGCCCTGCATGCACCC
ATTCTCCCCCTTTCAAGGGGGCGGTGGGGTATTAATGCACGCAGGGTCCA
GACACCTTGGTAGATATATAGCCACGGACAGGCATGGGGAG

protein sequence of jgi.p|Nanoce1779_2|244647

>mRNA_535-protein ID=mRNA_535-protein|Name=jgi.p|Nanoce1779_2|244647|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLERHARRPHNSTTQHSHMNEQSYIIRTYISTACSSRMADGNNGGNDSST
EPRKPVLHLGPSRRFTLGDLAAVATGTAHLELEEPALDALPALSPNAAPA
PPILPPLPSDGDGELLTIPETRAVIVARLASLVQGRATVSRETLEILASL
LNDPSSSLPAFHKSHEADNLLSVLHHHLPPSSLPLTLSEVQALRTGTFAH
TGPAGLRAYALTNLLSEADLIAATTCEVLHACVEPFQALHFDTHRPHRGQ
VTSAANLRLLLEGSMLVKPAVGGKGGGGGRRGGGEEGGGMDPEAVRCIPQ
VHGPCRDIIEGSVKALELELNSAESAVPNGGKEGGREGGMLGSYHPAQVA
AVSDNLRVRRKGGREEGRKGGFFVVLRMTAATRRL*

mRNA from alignment at scaffold_3:1292995..1294920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_535 ID=mRNA_535|Name=jgi.p|Nanoce1779_2|244647|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at scaffold_3:1292995..1294920+ (Nannochloropsis oceanica)
GGGGGGGAGGTCGAGGTCAAGAGTTGCTTTCTGGGATGGGTTTGGAAGCT
TACTCCACTGCCACGACGCACCGCCACAGTTATGTTACATGTTCTTTACT
GCCAGTATTCTCTATCCATCTGACCAGTCTGTGCGGGATTAGGCCCTTTA
GGGATAGCAAAAGCTGCCCATCTCAATCAGTAGCATCCCTCTCCTTCCTT
CCTCAACACCATCCATGCTTGAACGACACGCACGACGCCCTCATAATTCA
ACCACACAACACTCCCATATGAACGAACAATCATATATAATACGCACATA
CATCTCTACAGCGTGCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCA
ACGACTCGTCCACCGAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCA
CGTCGCTTCACCCTCGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCA
CCTCGAGCTGGAAGAGCCGGCATTGGATGCGCTTCCTGCACTTTCCCCTA
ATGCTGCACCGGCCCCTCCTATTTTACCACCATTACCTTCAGACGGAGAT
GGAGAGCTTCTCACCATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACT
CGCCTCCCTAGTCCAAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAA
TCCTTGCTTCCCTCTTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCAC
AAATCCCACGAAGCCGACAATCTTCTCTCCGTCCTCCACCACCACCTTCC
CCCCTCCTCCCTCCCCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGG
GAACATTCGCACACACGGGGCCTGCAGGCTTACGTGCTTATGCCCTGACC
AATCTGTTGTCTGAGGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCT
GCATGCTTGCGTGGAGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGC
CACACCGGGGACAGGTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAA
GGGTCGATGCTGGTCAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGG
AAGAAGGGGAGGAGGGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGC
GATGTATTCCCCAGGTGGGTTGGGAGAAAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGGAGAGAGCAGAGGGATAGAAGGGAGGGAGATG
GGAGGGTTCCCAAGGATTAGTAAGCTTTTTCGAAAGCTCAAATAAAACTT
GATCTAATCAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GCGATGTCCCTTTTTCCTTCTCCTCCCTCCTCCTCCTTTTTTATTCCCGG
ATGACGAATTTCACAATCCAAGAGAGTACCAATATGAGGGTCATGCCCTC
CCTCTCTCCCTCCTTTCCTCCCATGCATTCCTTCCCCCTTCCTCGTTCTC
GGCCACCCATCCCTCCCTCCCTCTCTCCCTCCCTCCCCCTCTCGCCCAGG
TCCACGGTCCCTGTCGAGACATCATCGAAGGGAGCGTCAAGGCCTTAGAG
CTGGAGCTAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGGGAAGGAGGG
AGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACCCGGCGCAAGTGGCAG
CGGTGTCGGATAATTTGCGGGTAAGGAGGAAGGGAGGAAGGGAGGAAGGA
AGGAAAGGAGGGTTTTTCGTCGTTCTTCGAATGACAGCAGCGACTCGCCG
TCTTTGAGGGTAACAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGTTCCAAGGACACAAATTGCCCTGCATGCACCCATTCTCCCCCTTTCA
AGGGGGCGGTGGGGTATTAATGCACGCAGGGTCCAGACACCTTGGTAGAT
ATATAGCCACGGACAGGCATGGGGAG

Coding sequence (CDS) from alignment at scaffold_3:1292995..1294920+

>mRNA_535 ID=mRNA_535|Name=jgi.p|Nanoce1779_2|244647|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_3:1292995..1294920+ (Nannochloropsis oceanica)
ATGCTTGAACGACACGCACGACGCCCTCATAATTCAACCACACAACACTC
CCATATGAACGAACAATCATATATAATACGCACATACATCTCTACAGCGT
GCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCAACGACTCGTCCACC
GAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCACGTCGCTTCACCCT
CGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCACCTCGAGCTGGAAG
AGCCGGCATTGGATGCGCTTCCTGCACTTTCCCCTAATGCTGCACCGGCC
CCTCCTATTTTACCACCATTACCTTCAGACGGAGATGGAGAGCTTCTCAC
CATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACTCGCCTCCCTAGTCC
AAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAATCCTTGCTTCCCTC
TTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCACAAATCCCACGAAGC
CGACAATCTTCTCTCCGTCCTCCACCACCACCTTCCCCCCTCCTCCCTCC
CCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGGGAACATTCGCACAC
ACGGGGCCTGCAGGCTTACGTGCTTATGCCCTGACCAATCTGTTGTCTGA
GGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCTGCATGCTTGCGTGG
AGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGCCACACCGGGGACAG
GTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAAGGGTCGATGCTGGT
CAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGGAAGAAGGGGAGGAG
GGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGCGATGTATTCCCCAG
GTCCACGGTCCCTGTCGAGACATCATCGAAGGGAGCGTCAAGGCCTTAGA
GCTGGAGCTAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGGGAAGGAGG
GAGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACCCGGCGCAAGTGGCA
GCGGTGTCGGATAATTTGCGGGTAAGGAGGAAGGGAGGAAGGGAGGAAGG
AAGGAAAGGAGGGTTTTTCGTCGTTCTTCGAATGACAGCAGCGACTCGCC
GTCTTTGAATGCTTGAACGACACGCACGACGCCCTCATAATTCAACCACA
CAACACTCCCATATGAACGAACAATCATATATAATACGCACATACATCTC
TACAGCGTGCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCAACGACT
CGTCCACCGAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCACGTCGC
TTCACCCTCGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCACCTCGA
GCTGGAAGAGCCGGCATTGGATGCGCTTCCTGCACTTTCCCCTAATGCTG
CACCGGCCCCTCCTATTTTACCACCATTACCTTCAGACGGAGATGGAGAG
CTTCTCACCATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACTCGCCTC
CCTAGTCCAAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAATCCTTG
CTTCCCTCTTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCACAAATCC
CACGAAGCCGACAATCTTCTCTCCGTCCTCCACCACCACCTTCCCCCCTC
CTCCCTCCCCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGGGAACAT
TCGCACACACGGGGCCTGCAGGCTTACGTGCTTATGCCCTGACCAATCTG
TTGTCTGAGGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCTGCATGC
TTGCGTGGAGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGCCACACC
GGGGACAGGTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAAGGGTCG
ATGCTGGTCAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGGAAGAAG
GGGAGGAGGGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGCGATGTA
TTCCCCAGGTCCACGGTCCCTGTCGAGACATCATCGAAGGGAGCGTCAAG
GCCTTAGAGCTGGAGCTAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACCCGGCGC
AAGTGGCAGCGGTGTCGGATAATTTGCGGGTAAGGAGGAAGGGAGGAAGG
GAGGAAGGAAGGAAAGGAGGGTTTTTCGTCGTTCTTCGAATGACAGCAGC
GACTCGCCGTCTTTGA

Synonyms

Publications