Properties
| Property Name | Value |
|---|
| TranscriptId | 592314 |
| Track | FilteredModels2 |
| ProteinId | 592228 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:219210..221200 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5349 ID=mRNA_5349|Name=jgi.p|Nanoce1779_2|592228|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp
CAACAGGAGGGTTTTGAAAAAGAGCAGAGAAAGGCGAAAGCTCACTTACA
GACGAGACCCCAAAGGCAAGGGAGGCGTCGTGCGTCGTGGAAATGTTGGG
TCGCCGCTCGACCAAGATCTCGACGTGCCTCAAAACCACGATGCTCCTGC
TGGTCCTGGTGACCCCGTCCGCCCGGGCCTTTCACGTGGCCAGCTTAGGG
AGAAGACCACTCTCCGATTCATCGGCACGATACTTTTCTCGCCATCGCTT
TGGCCGCCAGCATCGACAAGAAGGTGTCAGCATGATGGCGGAACGGCCCA
GCTCAGCGGGCAAGGGCCTGGACGTCAGGCTTGTCACTGACGAGCCTGAC
CTCGTCATGGCCCACCTCAAAGCACGCCATGCCTCGGAGGAGCAGATGTC
CAGCGTGGACGACGTTGGATCTCTTAATCGACGACGCAAAGAGCTAGTAA
AAGAGCAACAAGGGGCACTAGCACAGCGCAAGATGCTCTCCGCAGAGATT
GGAAAGCTAATGAAGGAAAAGAAGAACGAGGAGGCAACGAAGCTCAAGTC
TCAAGTAGAATACGCGAGCAGCGTGGCGGCCACGGCGGAGGAGCAACTCC
TGGATCTCGAGCAAGAAATGGAGTTGCTTATGTACCAGATTCCCAACCTA
CTGGACGACCGCGTTCCAGAGGGGAAGGACGAGGAGGCAAACGTAGTGGT
AACTGAATGGGGGACAGATAAACGTAAGATTGGAGAGGGTTTTCTGTGGC
ATGATGACATTGCGAGTAAGGTGGGTGGGTACGATCCTTCCGCTGCAGCC
AAGCTGTCAGGTGCACGTTTCAGCGTGTTGAGCGGGCCGGTCGCAAGGTT
GGAAAGGGCGATAATCCAGTTTTTCTTGGACAGGCATACAGACAGAAATG
GCTACAGGGAGGTATCTGTGCCTTACATCGTGAGTCGCTCAACGTTGACG
GGGACGGGGCAACTGCCAAAGTTTGAGAACGATCTTTTTGCGGTTAACCA
CCAAGTGAATGGCGAAGATGCATTTTTGATTCCTACGGCTGAGGTGCCGA
TCACAAATTTGCATCGGGATGAGATTCTGGATGCGTCACAGTTGCCTTTG
AGCTACGTGGGCCTCACGCCTTGCTTTCGGGCGGAGGCTGGCTCGTATGG
CCGTGACACCAAGGGGTTGCTCCGTCAACACCAGTTTCACAAGGTGGAGC
TTGTGAAAATTACGACGCCGGAGCAGAGTAGTGCGGAGCATGAGGCATTG
ACACAGCATGCGGAGGAGTGTTTGAAGTTGTTGGGTTTGCCCTATCGCAA
GGTCCGCCTATGTTCGGGCGATATCGGATTTGCTGCCACTCACTGCTACG
ACTTGGAAGTTTGGTTGCCCGCGCAGCAGACGTACCGGGAAATCGCATCT
TGCTCCAATTGCGGTGACTTCCAAGCACGACGGATGGGTCTGCGATTCCG
ACCGGCTCCGATGGCAAGTGCGACGGAGGAGGGGAAGAAGGGGAAGAAGA
GCACGGTCCTGTGTCATACCATCAATGGATCGGGCTTGGCAGTAGGACGG
ACGCTGGTGGCGATTTTGGAAAATTATCAGCATGAAGATGGGAGCGTGAG
TATACCCGAGGTATTGGTTCCGTACATGGGGGGCATGGCAAGATTGGAGC
CTGTAGTCAAGAAGAAGACAGCATATAAATGAGGGATGCAGGGATGGAAG
AAGGGAGGGTCAGGGGAGAAGGAAGCAAGCAAGAGTTTCTAGCCGAG back to topprotein sequence of jgi.p|Nanoce1779_2|592228 >mRNA_5349-protein ID=mRNA_5349-protein|Name=jgi.p|Nanoce1779_2|592228|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MLGRRSTKISTCLKTTMLLLVLVTPSARAFHVASLGRRPLSDSSARYFSR
HRFGRQHRQEGVSMMAERPSSAGKGLDVRLVTDEPDLVMAHLKARHASEE
QMSSVDDVGSLNRRRKELVKEQQGALAQRKMLSAEIGKLMKEKKNEEATK
LKSQVEYASSVAATAEEQLLDLEQEMELLMYQIPNLLDDRVPEGKDEEAN
VVVTEWGTDKRKIGEGFLWHDDIASKVGGYDPSAAAKLSGARFSVLSGPV
ARLERAIIQFFLDRHTDRNGYREVSVPYIVSRSTLTGTGQLPKFENDLFA
VNHQVNGEDAFLIPTAEVPITNLHRDEILDASQLPLSYVGLTPCFRAEAG
SYGRDTKGLLRQHQFHKVELVKITTPEQSSAEHEALTQHAEECLKLLGLP
YRKVRLCSGDIGFAATHCYDLEVWLPAQQTYREIASCSNCGDFQARRMGL
RFRPAPMASATEEGKKGKKSTVLCHTINGSGLAVGRTLVAILENYQHEDG
SVSIPEVLVPYMGGMARLEPVVKKKTAYK* back to topmRNA from alignment at scaffold_13:219210..221200+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5349 ID=mRNA_5349|Name=jgi.p|Nanoce1779_2|592228|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at scaffold_13:219210..221200+ (Nannochloropsis oceanica)
CAACAGGAGGGTTTTGAAAAAGAGCAGAGAAAGGCGAAAGCTCACTTACA
GACGAGACCCCAAAGGCAAGGGAGGCGTCGTGCGTCGTGGAAATGTTGGG
TCGCCGCTCGACCAAGATCTCGACGTGCCTCAAAACCACGATGCTCCTGC
TGGTCCTGGTGACCCCGTCCGCCCGGGCCTTTCACGTGGTACGTACTTGT
AGGGTAAAAGACAAAAATACAGACATAAGCTCCATAGAGATGGTGTACGG
GCTGTTGTCCGGATAAAAGGCCCTTGTCGTAAATATGTCTAGTCCACACC
CTTCCCTCCCCACCACATGTGCGCCTACAGGCCAGCTTAGGGAGAAGACC
ACTCTCCGATTCATCGGCACGATACTTTTCTCGCCATCGCTTTGGCCGCC
AGCATCGACAAGAAGGTGTCAGCATGATGGCGGAACGGCCCAGCTCAGCG
GGCAAGGGCCTGGACGTCAGGCTTGTCACTGACGAGCCTGACCTCGTCAT
GGCCCACCTCAAAGCACGCCATGCCTCGGAGGAGCAGATGTCCAGCGTGG
ACGACGTTGGATGTAAGACAATGCCTATAGTGCTGAGTGACTTATCGTGT
GTGTGTGGTATTCGCTTGAGCCTCACGCTCGGCTCATTCGTCTCAAATCT
CCCTTCCCCAACAGCTCTTAATCGACGACGCAAAGAGCTAGTAAAAGAGC
AACAAGGGGCACTAGCACAGCGCAAGATGCTCTCCGCAGAGATTGGAAAG
CTAATGAAGGAAAAGAAGAACGAGGAGGCAACGAAGCTCAAGTCTCAAGT
AGAATACGCGAGCAGCGTGGCGGCCACGGCGGAGGAGCAACTCCTGGATC
TCGAGCAAGAAATGGAGTTGCTTATGTACCAGATTCCCAACCTACTGGAC
GACCGCGTTCCAGAGGGGAAGGACGAGGAGGCAAACGTAGTGGTAACTGA
ATGGGGGACAGATAAACGTAAGATTGGAGAGGGTTTTCTGTGGCATGATG
ACATTGCGAGTAAGGTGGGTGGGTACGATCCTTCCGCTGCAGCCAAGCTG
TCAGGTGCACGTTTCAGCGTGTTGAGCGGGCCGGTCGCAAGGTTGGAAAG
GGCGATAATCCAGTTTTTCTTGGACAGGCATACAGACAGAAATGGCTACA
GGGAGGTATCTGTGCCTTACATCGTGAGTCGCTCAACGTTGACGGGGACG
GGGCAACTGCCAAAGTTTGAGAACGATCTTTTTGCGGTTAACCACCAAGT
GAATGGCGAAGATGCATTTTTGATTCCTACGGCTGAGGTGCCGATCACAA
ATTTGCATCGGGATGAGATTCTGGATGCGTCACAGTTGCCTTTGAGCTAC
GTGGGCCTCACGCCTTGCTTTCGGGCGGAGGCTGGCTCGTATGGCCGTGA
CACCAAGGGGTTGCTCCGTCAACACCAGTTTCACAAGGTGGAGCTTGTGA
AAATTACGACGCCGGAGCAGAGTAGTGCGGAGCATGAGGCATTGACACAG
CATGCGGAGGAGTGTTTGAAGTTGTTGGGTTTGCCCTATCGCAAGGTCCG
CCTATGTTCGGGCGATATCGGATTTGCTGCCACTCACTGCTACGACTTGG
AAGTTTGGTTGCCCGCGCAGCAGACGTACCGGGAAATCGCATCTTGCTCC
AATTGCGGTGACTTCCAAGCACGACGGATGGGTCTGCGATTCCGACCGGC
TCCGATGGCAAGTGCGACGGAGGAGGGGAAGAAGGGGAAGAAGAGCACGG
TCCTGTGTCATACCATCAATGGATCGGGCTTGGCAGTAGGACGGACGCTG
GTGGCGATTTTGGAAAATTATCAGCATGAAGATGGGAGCGTGAGTATACC
CGAGGTATTGGTTCCGTACATGGGGGGCATGGCAAGATTGGAGCCTGTAG
TCAAGAAGAAGACAGCATATAAATGAGGGATGCAGGGATGGAAGAAGGGA
GGGTCAGGGGAGAAGGAAGCAAGCAAGAGTTTCTAGCCGAG back to topCoding sequence (CDS) from alignment at scaffold_13:219210..221200+ >mRNA_5349 ID=mRNA_5349|Name=jgi.p|Nanoce1779_2|592228|organism=Nannochloropsis oceanica|type=CDS|length=4770bp|location=Sequence derived from alignment at scaffold_13:219210..221200+ (Nannochloropsis oceanica)
ATGTTGGGTCGCCGCTCGACCAAGATCTCGACGTGCCTCAAAACCACGAT
GCTCCTGCTGGTCCTGGTGACCCCGTCCGCCCGGGCCTTTCACGTGGCCA
GCTTAGGGAGAAGACCACTCTCCGATTCATCGGCACGATACTTTTCTCGC
CATCGCTTTGGCCGCCAGCATCGACAAGAAGGTGTCAGCATGATGGCGGA
ACGGCCCAGCTCAGCGGGCAAGGGCCTGGACGTCAGGCTTGTCACTGACG
AGCCTGACCTCGTCATGGCCCACCTCAAAGCACGCCATGCCTCGGAGGAG
CAGATGTCCAGCGTGGACGACGTTGGATCTCTTAATCGACGACGCAAAGA
GCTAGTAAAAGAGCAACAAGGGGCACTAGCACAGCGCAAGATGCTCTCCG
CAGAGATTGGAAAGCTAATGAAGGAAAAGAAGAACGAGGAGGCAACGAAG
CTCAAGTCTCAAGTAGAATACGCGAGCAGCGTGGCGGCCACGGCGGAGGA
GCAACTCCTGGATCTCGAGCAAGAAATGGAGTTGCTTATGTACCAGATTC
CCAACCTACTGGACGACCGCGTTCCAGAGGGGAAGGACGAGGAGGCAAAC
GTAGTGGTAACTGAATGGGGGACAGATAAACGTAAGATTGGAGAGGGTTT
TCTGTGGCATGATGACATTGCGAGTAAGGTGGGTGGGTACGATCCTTCCG
CTGCAGCCAAGCTGTCAGGTGCACGTTTCAGCGTGTTGAGCGGGCCGGTC
GCAAGGTTGGAAAGGGCGATAATCCAGTTTTTCTTGGACAGGCATACAGA
CAGAAATGGCTACAGGGAGGTATCTGTGCCTTACATCGTGAGTCGCTCAA
CGTTGACGGGGACGGGGCAACTGCCAAAGTTTGAGAACGATCTTTTTGCG
GTTAACCACCAAGTGAATGGCGAAGATGCATTTTTGATTCCTACGGCTGA
GGTGCCGATCACAAATTTGCATCGGGATGAGATTCTGGATGCGTCACAGT
TGCCTTTGAGCTACGTGGGCCTCACGCCTTGCTTTCGGGCGGAGGCTGGC
TCGTATGGCCGTGACACCAAGGGGTTGCTCCGTCAACACCAGTTTCACAA
GGTGGAGCTTGTGAAAATTACGACGCCGGAGCAGAGTAGTGCGGAGCATG
AGGCATTGACACAGCATGCGGAGGAGTGTTTGAAGTTGTTGGGTTTGCCC
TATCGCAAGGTCCGCCTATGTTCGGGCGATATCGGATTTGCTGCCACTCA
CTGCTACGACTTGGAAGTTTGGTTGCCCGCGCAGCAGACGTACCGGGAAA
TCGCATCTTGCTCCAATTGCGGTGACTTCCAAGCACGACGGATGGGTCTG
CGATTCCGACCGGCTCCGATGGCAAGTGCGACGGAGGAGGGGAAGAAGGG
GAAGAAGAGCACGGTCCTGTGTCATACCATCAATGGATCGGGCTTGGCAG
TAGGACGGACGCTGGTGGCGATTTTGGAAAATTATCAGCATGAAGATGGG
AGCGTGAGTATACCCGAGGTATTGGTTCCGTACATGGGGGGCATGGCAAG
ATTGGAGCCTGTAGTCAAGAAGAAGACAGCATATAAATGAATGTTGGGTC
GCCGCTCGACCAAGATCTCGACGTGCCTCAAAACCACGATGCTCCTGCTG
GTCCTGGTGACCCCGTCCGCCCGGGCCTTTCACGTGGCCAGCTTAGGGAG
AAGACCACTCTCCGATTCATCGGCACGATACTTTTCTCGCCATCGCTTTG
GCCGCCAGCATCGACAAGAAGGTGTCAGCATGATGGCGGAACGGCCCAGC
TCAGCGGGCAAGGGCCTGGACGTCAGGCTTGTCACTGACGAGCCTGACCT
CGTCATGGCCCACCTCAAAGCACGCCATGCCTCGGAGGAGCAGATGTCCA
GCGTGGACGACGTTGGATCTCTTAATCGACGACGCAAAGAGCTAGTAAAA
GAGCAACAAGGGGCACTAGCACAGCGCAAGATGCTCTCCGCAGAGATTGG
AAAGCTAATGAAGGAAAAGAAGAACGAGGAGGCAACGAAGCTCAAGTCTC
AAGTAGAATACGCGAGCAGCGTGGCGGCCACGGCGGAGGAGCAACTCCTG
GATCTCGAGCAAGAAATGGAGTTGCTTATGTACCAGATTCCCAACCTACT
GGACGACCGCGTTCCAGAGGGGAAGGACGAGGAGGCAAACGTAGTGGTAA
CTGAATGGGGGACAGATAAACGTAAGATTGGAGAGGGTTTTCTGTGGCAT
GATGACATTGCGAGTAAGGTGGGTGGGTACGATCCTTCCGCTGCAGCCAA
GCTGTCAGGTGCACGTTTCAGCGTGTTGAGCGGGCCGGTCGCAAGGTTGG
AAAGGGCGATAATCCAGTTTTTCTTGGACAGGCATACAGACAGAAATGGC
TACAGGGAGGTATCTGTGCCTTACATCGTGAGTCGCTCAACGTTGACGGG
GACGGGGCAACTGCCAAAGTTTGAGAACGATCTTTTTGCGGTTAACCACC
AAGTGAATGGCGAAGATGCATTTTTGATTCCTACGGCTGAGGTGCCGATC
ACAAATTTGCATCGGGATGAGATTCTGGATGCGTCACAGTTGCCTTTGAG
CTACGTGGGCCTCACGCCTTGCTTTCGGGCGGAGGCTGGCTCGTATGGCC
GTGACACCAAGGGGTTGCTCCGTCAACACCAGTTTCACAAGGTGGAGCTT
GTGAAAATTACGACGCCGGAGCAGAGTAGTGCGGAGCATGAGGCATTGAC
ACAGCATGCGGAGGAGTGTTTGAAGTTGTTGGGTTTGCCCTATCGCAAGG
TCCGCCTATGTTCGGGCGATATCGGATTTGCTGCCACTCACTGCTACGAC
TTGGAAGTTTGGTTGCCCGCGCAGCAGACGTACCGGGAAATCGCATCTTG
CTCCAATTGCGGTGACTTCCAAGCACGACGGATGGGTCTGCGATTCCGAC
CGGCTCCGATGGCAAGTGCGACGGAGGAGGGGAAGAAGGGGAAGAAGAGC
ACGGTCCTGTGTCATACCATCAATGGATCGGGCTTGGCAGTAGGACGGAC
GCTGGTGGCGATTTTGGAAAATTATCAGCATGAAGATGGGAGCGTGAGTA
TACCCGAGGTATTGGTTCCGTACATGGGGGGCATGGCAAGATTGGAGCCT
GTAGTCAAGAAGAAGACAGCATATAAATGAATGTTGGGTCGCCGCTCGAC
CAAGATCTCGACGTGCCTCAAAACCACGATGCTCCTGCTGGTCCTGGTGA
CCCCGTCCGCCCGGGCCTTTCACGTGGCCAGCTTAGGGAGAAGACCACTC
TCCGATTCATCGGCACGATACTTTTCTCGCCATCGCTTTGGCCGCCAGCA
TCGACAAGAAGGTGTCAGCATGATGGCGGAACGGCCCAGCTCAGCGGGCA
AGGGCCTGGACGTCAGGCTTGTCACTGACGAGCCTGACCTCGTCATGGCC
CACCTCAAAGCACGCCATGCCTCGGAGGAGCAGATGTCCAGCGTGGACGA
CGTTGGATCTCTTAATCGACGACGCAAAGAGCTAGTAAAAGAGCAACAAG
GGGCACTAGCACAGCGCAAGATGCTCTCCGCAGAGATTGGAAAGCTAATG
AAGGAAAAGAAGAACGAGGAGGCAACGAAGCTCAAGTCTCAAGTAGAATA
CGCGAGCAGCGTGGCGGCCACGGCGGAGGAGCAACTCCTGGATCTCGAGC
AAGAAATGGAGTTGCTTATGTACCAGATTCCCAACCTACTGGACGACCGC
GTTCCAGAGGGGAAGGACGAGGAGGCAAACGTAGTGGTAACTGAATGGGG
GACAGATAAACGTAAGATTGGAGAGGGTTTTCTGTGGCATGATGACATTG
CGAGTAAGGTGGGTGGGTACGATCCTTCCGCTGCAGCCAAGCTGTCAGGT
GCACGTTTCAGCGTGTTGAGCGGGCCGGTCGCAAGGTTGGAAAGGGCGAT
AATCCAGTTTTTCTTGGACAGGCATACAGACAGAAATGGCTACAGGGAGG
TATCTGTGCCTTACATCGTGAGTCGCTCAACGTTGACGGGGACGGGGCAA
CTGCCAAAGTTTGAGAACGATCTTTTTGCGGTTAACCACCAAGTGAATGG
CGAAGATGCATTTTTGATTCCTACGGCTGAGGTGCCGATCACAAATTTGC
ATCGGGATGAGATTCTGGATGCGTCACAGTTGCCTTTGAGCTACGTGGGC
CTCACGCCTTGCTTTCGGGCGGAGGCTGGCTCGTATGGCCGTGACACCAA
GGGGTTGCTCCGTCAACACCAGTTTCACAAGGTGGAGCTTGTGAAAATTA
CGACGCCGGAGCAGAGTAGTGCGGAGCATGAGGCATTGACACAGCATGCG
GAGGAGTGTTTGAAGTTGTTGGGTTTGCCCTATCGCAAGGTCCGCCTATG
TTCGGGCGATATCGGATTTGCTGCCACTCACTGCTACGACTTGGAAGTTT
GGTTGCCCGCGCAGCAGACGTACCGGGAAATCGCATCTTGCTCCAATTGC
GGTGACTTCCAAGCACGACGGATGGGTCTGCGATTCCGACCGGCTCCGAT
GGCAAGTGCGACGGAGGAGGGGAAGAAGGGGAAGAAGAGCACGGTCCTGT
GTCATACCATCAATGGATCGGGCTTGGCAGTAGGACGGACGCTGGTGGCG
ATTTTGGAAAATTATCAGCATGAAGATGGGAGCGTGAGTATACCCGAGGT
ATTGGTTCCGTACATGGGGGGCATGGCAAGATTGGAGCCTGTAGTCAAGA
AGAAGACAGCATATAAATGA back to top
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