jgi.p|Nanoce1779_2|592220, mRNA_5347 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592220
Unique NamemRNA_5347
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1317
Alignment locationscaffold_13:215534..217286 -

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Properties
Property NameValue
TranscriptId592306
TrackFilteredModels2
ProteinId592220
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:215534..217286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592220gene_5347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592220mRNA_5347-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5347CDS_5347Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5347 ID=mRNA_5347|Name=jgi.p|Nanoce1779_2|592220|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
CTAACACTGCACAATACCCAACCCGTGCACAGATCACTAGGCATGGAGAC
CATGCCGCGATGCGCTACTTCTGTGGTCTTGTGGCTTTTGTTGGCCTGCA
TGATTGGACGCTCCTCTATTTCAGTCCTCCACAGATCATGAAGGCCCTTT
TCCTCCCCCCCCTCTTCTTCTCAAAGCACAGGACAAAACTACAAGCAATA
GCACAGCAGCGCTCTCCTTCTGATCTCTTTCGTTATGGCTACGACCGCCA
AGAAGATCTTGAAATTCCGGAACTACAGACCAGCCGATACCTCATTGGTA
GGCCCACAGACCGCCACGTCGGGGGAGGGAAATGCTGCAGTTGCATCCAA
AGCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAGGGCCGCCAGCAAGCTG
GCGCTGATCAACAACAGAAGCGTCACGAGCCCGACCATCAGCAAGCGCAG
CTACCACACCTTAGAAAAGAGGAGGAGGACGCTATTCAACGGGAATTGCG
ACGGTACGAGGAGGAGCATGGAAGTGGGGGCCAGCTAAATGTAGCGCCGC
GAAAGCCCAATTGGGATCTAAAGCGGGATGTGGCGAAAAAGGTGGCGAAG
TTGAATCGACTCACCCAAAAAGCTATCGTAGAGTTGCTCCGAGAGAGGTT
GGCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGTAGTGAAAGTGATAGTG
GCAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAAAGACCAGGAAGGGAAG
AGCGACAAAGAGTAATATAAAGCGAAAAGCCGTGACTGGAATAAGATTAC
ATGTTCAAATGCCTTCATCTCGTTCCCCTCTCTTCAATGTCTTTATTTCA
ATTTCCTTTCAATACTTATGCCTATCCATGTACTCCCACTCCTTCTCCTT
ACTCTTCTTCCGTCGACCCCTTGTTTTCCATCACCACCACTTTCCCCAAT
ATTGTCCGGACACCTGGGTTCGCCCTACCCCCTCCCTCCAAGATCTCCTT
GGCCAGTAATTCATTCTTCAGCTGGCCACATCCGGCATTGATGTCGATTC
CGCGCCTCACCCTCATGGTCGCCGGAATCCCCCAATCTTCATTCAAGATA
TTCAAGAATCGCTCCATCGACGCCTTCCCCCCCGGCTTCCCATCAAATCC
CGTCGTTGGATTAACATTTATCACATTTACGTGACACTTCCCTTTCAGCG
GCGCCAGCAATTGCCCCAACTCATCAGCCACCTTGGGGCTATCGTTCTGG
CCACTAATCAAAGCCCACTCGAAGCTAATCCTCCTATTCGTCCTCTGCAC
ATAATACTGACACGCGC
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protein sequence of jgi.p|Nanoce1779_2|592220

>mRNA_5347-protein ID=mRNA_5347-protein|Name=jgi.p|Nanoce1779_2|592220|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MATTAKKILKFRNYRPADTSLVGPQTATSGEGNAAVASKASEEPLADRRE
GRQQAGADQQQKRHEPDHQQAQLPHLRKEEEDAIQRELRRYEEEHGSGGQ
LNVAPRKPNWDLKRDVAKKVAKLNRLTQKAIVELLRERLAQEAEDEGSSS
SESDSGSSVSEEESEEKDQEGKSDKE*
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mRNA from alignment at scaffold_13:215534..217286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5347 ID=mRNA_5347|Name=jgi.p|Nanoce1779_2|592220|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at scaffold_13:215534..217286- (Nannochloropsis oceanica)
CTAACACTGCACAATACCCAACCCGTGCACAGATCACTAGGCATGGAGAC
CATGCCGCGATGCGCTACTTCTGTGGTCTTGTGGCTTTTGTTGGCCTGCA
TGATTGGACGCTCCTCTATTTCAGTCCTCCACAGATCATGAAGGCCCTTT
TCCTCCCCCCCCTCTTCTTCTCAAAGCACAGGACAAAACTACAAGCAATA
GCACAGCAGCGCTCTCCTTCTGATCTCTTTCGTTATGGCTACGACCGCCA
AGAAGGTGACTTGGTCCATTCCCAATTCCAACATGTCCAACTTCCTCCCT
CCTCCTCGAACAAAGCCACTCTCACACCCTTCTCATCAACCCTCCCCCAC
ATAGATCTTGAAATTCCGGAACTACAGACCAGCCGATACCTCATTGGTAG
GCCCACAGACCGCCACGTCGGGGGAGGGAAATGCTGCAGTTGCATCCAAA
GCCTCCGAAGAGCCTCTGGCAGATCGTCGCGAGGGCCGCCAGCAAGCTGG
CGCTGATCAACAACAGAAGCGTCACGAGCCCGACCATCAGCAAGCGCAGC
TACCACACCTTAGAAAAGAGGAGGAGGACGCTATTCAACGGGAATTGCGA
CGGTACGAGGAGGAGCATGGAAGTGGGGGCCAGCTAAATGTAGCGCCGCG
AAAGCCCAATTGGGATCTAAAGCGGGATGTGGCGAAAAAGGTGGCGAAGT
TGAATCGACTCACCCAAAAAGCTATCGTAGAGTTGCTCCGAGAGAGGTTG
GCTCAGGAGGCAGAGGATGAGGGCAGCAGTAGTAGTGAAAGTGATAGTGG
CAGCAGTGTAAGTGAAGAAGAGAGCGAGGAAAAAGACCAGGAAGGGAAGA
GCGACAAAGAGTAATATAAAGCGAAAAGCCGTGACTGGAATAAGATTACA
TGTTCAAATGCCTTCATCTCGTTCCCCTCTCTTCAATGTCTTTATTTCAA
TTTCCTTTCAATACTTATGCCTATCCATGTACTCCCACTCCTTCTCCTTA
CTCTTCTTCCGTCGACCCCTTGTTTTCCATCACCACCACTTTCCCCAATA
TTGTCCGGACACCTGGGTTCGCCCTACCCCCTCCCTCCAAGATCTCCTTG
GCCAGTAATTCATTCTTCAGCTGGCCACATCCGGCATTGATGTCGATTCC
GCGCCTCACCTAAAGAAATGTGTGTAGAGGTCGAAAGGAGGGCGTGAAAC
AATGAAAAAATTCAGGGCGGCCACGAGAAATAGCCGACAAAGATCACTGG
CCTCCTCAATAGAGAGGTGAATGATAGAGATGCCAGAAATGTCATATACA
AGAAAGGGAAGATTGAGCCCAGGAAATCCCTCTCCTCCTCCTCACCCTCC
TGGTCGCCAGAACCCCCCCAATCCTCATTCAAGTTATTCCGACATATCTC
ACGGAAAACAAAGCCTCGCAGGTATGGCACAAGTACGAACAAAAAAGGGA
GAGAGTAAGACCCCGGTTTGAACCTCGCATATACCTTTCTCCTTACCCTC
ATGGTCGCCGGAATCCCCCAATCTTCATTCAAGATATTCAAGAATCGCTC
CATCGACGCCTTCCCCCCCGGCTTCCCATCAAATCCCGTCGTTGGATTAA
CATTTATCACATTTACGTGACACTTCCCTTTCAGCGGCGCCAGCAATTGC
CCCAACTCATCAGCCACCTTGGGGCTATCGTTCTGGCCACTAATCAAAGC
CCACTCGAAGCTAATCCTCCTATTCGTCCTCTGCACATAATACTGACACG
CGC
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Coding sequence (CDS) from alignment at scaffold_13:215534..217286-

>mRNA_5347 ID=mRNA_5347|Name=jgi.p|Nanoce1779_2|592220|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_13:215534..217286- (Nannochloropsis oceanica)
AGATCTTGAAATTCCGGAACTACAGACCAGCCGATACCTCATTGGTAGGC
CCACAGACCGCCACGTCGGGGGAGGGAAATGCTGCAGTTGCATCCAAAGC
CTCCGAAGAGCCTCTGGCAGATCGTCGCGAGGGCCGCCAGCAAGCTGGCG
CTGATCAACAACAGAAGCGTCACGAGCCCGACCATCAGCAAGCGCAGCTA
CCACACCTTAGAAAAGAGGAGGAGGACGCTATTCAACGGGAATTGCGACG
GTACGAGGAGGAGCATGGAAGTGGGGGCCAGCTAAATGTAGCGCCGCGAA
AGCCCAATTGGGATCTAAAGCGGGATGTGGCGAAAAAGGTGGCGAAGTTG
AATCGACTCACCCAAAAAGCTATCGTAGAGTTGCTCCGAGAGAGGTTGGC
TCAGGAGGCAGAGGATGAGGGCAGCAGTAGTAGTGAAAGTGATAGTGGCA
GCAGTGTAAGTGAAGAAGAGAGCGAGGAAAAAGACCAGGAAGGGAAGAGC
GACAAAGAGTAAATGGCTACGACCGCCAAGAAGATCTTGAAATTCCGGAA
CTACAGACCAGCCGATACCTCATTGGTAGGCCCACAGACCGCCACGTCGG
GGGAGGGAAATGCTGCAGTTGCATCCAAAGCCTCCGAAGAGCCTCTGGCA
GATCGTCGCGAGGGCCGCCAGCAAGCTGGCGCTGATCAACAACAGAAGCG
TCACGAGCCCGACCATCAGCAAGCGCAGCTACCACACCTTAGAAAAGAGG
AGGAGGACGCTATTCAACGGGAATTGCGACGGTACGAGGAGGAGCATGGA
AGTGGGGGCCAGCTAAATGTAGCGCCGCGAAAGCCCAATTGGGATCTAAA
GCGGGATGTGGCGAAAAAGGTGGCGAAGTTGAATCGACTCACCCAAAAAG
CTATCGTAGAGTTGCTCCGAGAGAGGTTGGCTCAGGAGGCAGAGGATGAG
GGCAGCAGTAGTAGTGAAAGTGATAGTGGCAGCAGTGTAAGTGAAGAAGA
GAGCGAGGAAAAAGACCAGGAAGGGAAGAGCGACAAAGAGTAAATGGCTA
CGACCGCCAAGA
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Synonyms
Publications