jgi.p|Nanoce1779_2|529255, mRNA_5346 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|529255
Unique Name	mRNA_5346
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1170
Alignment location	scaffold_13:214783..216289 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	529341
Track	FilteredModels2
ProteinId	529255

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:214783..216289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529255	gene_5346	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529255	mRNA_5346-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5346	CDS_5346	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:214783..216289+
coding sequence from alignment at scaffold_13:214783..216289+

mRNA sequence

>mRNA_5346 ID=mRNA_5346|Name=jgi.p|Nanoce1779_2|529255|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGGACATTTACACGCTGACGGAGAAGGAGATTGAGGATTTTTTGCAGAC
GCAGCTGAAGCAGCCTCGATACCGAGCCAAGCAAGTGTATGCGTGGCTGT
ATCAACGCGGGGCCACCTCGTTCGAGGTAATGAACGACTTGCCCAAGGCG
TTGCGTGCAGGCCTCGCAGAGCATTTTTCTTTGGGCTGCTTAGAGATGGC
TTTTGAGCAGGTTAGCAAGGATGGGACAATTAAACGTGCATATCGCTTGG
CGGACGGTCAGTTGATTGAGTCGGTTTTGATGCCTTATGAGGATGGACGA
CGCACGGCCTGCATTTCGAGCCAGGCGGGATGTGCGATGGGCTGTGCATT
TTGTCAAACGGGGCAGATGGGTTTTGCACGGCAGTTGACCGACGCAGAAA
TTTTTCAGCAGGCGCTGTTTTTCTCCCGGGACTTAGCGAAGGAAGGGTTG
TATCGACTATCAAATGTGGTGTTTATGGGGGAGGGAGAGCCTCTGAATAA
CAGAAAAATGGTTTTCAGTGCGGTGCGTCGGTTGAATTCTGATTTGAAGA
TTGGGGCGAGGCATATCACTGTGTCGACGGTGGGTTTGGCTCCGAGGATC
AGGGACTTGGCGGATACAGTTGATGATCTTCAGGGGGAGGGGGGGTTGCT
CTCGCAGATAAAGTTGGCTGTATCTTTGCATGCCACCACGGATAGGGAGC
GCACGGCGATTATGCCTGTAAATAAGCGATTTCCAGTCGCCGACTTGATG
AGCGCGTGTCAGTATTATGTGCAGAGGACGAATAGGAGGATTAGCTTCGA
GTGGGCTTTGATTAGTGGCCAGAACGATAGCCCCAAGGTGGCTGATGAGT
TGGGGCAATTGCTGGCGCCGCTGAAAGGGAAGTGTCACGTAAATGTGATA
AATGTTAATCCAACGACGGGATTTGATGGGAAGCCGGGGGGGAAGGCGTC
GATGGAGCGATTCTTGAATATCTTGAATGAAGATTGGGGGATTCCGGCGA
CCATGAGGGTGAGGCGCGGAATCGACATCAATGCCGGATGTGGCCAGCTG
AAGAATGAATTACTGGCCAAGGAGATCTTGGAGGGAGGGGGTAGGGCGAA
CCCAGGTGTCCGGACAATATTGGGGAAAGTGGTGGTGATGGAAAACAAGG
GGTCGACGGAAGAAGAGTAA

protein sequence of jgi.p|Nanoce1779_2|529255

>mRNA_5346-protein ID=mRNA_5346-protein|Name=jgi.p|Nanoce1779_2|529255|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MDIYTLTEKEIEDFLQTQLKQPRYRAKQVYAWLYQRGATSFEVMNDLPKA
LRAGLAEHFSLGCLEMAFEQVSKDGTIKRAYRLADGQLIESVLMPYEDGR
RTACISSQAGCAMGCAFCQTGQMGFARQLTDAEIFQQALFFSRDLAKEGL
YRLSNVVFMGEGEPLNNRKMVFSAVRRLNSDLKIGARHITVSTVGLAPRI
RDLADTVDDLQGEGGLLSQIKLAVSLHATTDRERTAIMPVNKRFPVADLM
SACQYYVQRTNRRISFEWALISGQNDSPKVADELGQLLAPLKGKCHVNVI
NVNPTTGFDGKPGGKASMERFLNILNEDWGIPATMRVRRGIDINAGCGQL
KNELLAKEILEGGGRANPGVRTILGKVVVMENKGSTEEE*

mRNA from alignment at scaffold_13:214783..216289+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5346 ID=mRNA_5346|Name=jgi.p|Nanoce1779_2|529255|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp|location=Sequence derived from alignment at scaffold_13:214783..216289+ (Nannochloropsis oceanica)
ATGGACATTTACACGCTGACGGAGAAGGAGATTGAGGATTTTTTGCAGAC
GCAGCTGAAGCAGCCTCGATACCGAGCCAAGCAAGTGTATGCGTGGCTGT
ATCAACGCGGGGCCACCTCGTTCGAGGTAATGAACGACTTGCCCAAGGCG
TTGCGTGCAGGCCTCGCAGAGCATTTTTCTTTGGGCTGCTTAGAGATGGC
TTTTGAGCAGGTTAGCAAGGATGGGACAATTAAACGTGCATATCGCTTGG
CGGACGGTCAGTTGATTGAGTCGGTTTTGATGCCTTATGAGGATGGACGA
CGCACGGCCTGCATTTCGAGCCAGGCGGGATGTGCGATGGGCTGTGCATT
TTGTCAAACGGGGCAGATGGGTTTTGCACGGCAGTTGACCGACGCAGAAA
TTTTTCAGCAGGCGCTGTTTTTCTCCCGGGACTTAGCGAAGGAAGGGTTG
TATCGACTATCAAATGTGGTGTTTATGGGGGAGGGAGAGCCTCTGAATAA
CAGAAAAATGGTTTTCAGTGCGGTGCGTCGGTTGAATTCTGATTTGAAGA
TTGGGGCGAGGCATATCACTGTGTCGACGGTGGGTTTGGCTCCGAGGATC
AGGGACTTGGCGGATACAGTTGATGATCTTCAGGGGGAGGGGGGGTTGCT
CTCGCAGATAAAGTTGGCTGTATCTTTGCATGCCACCACGGATAGGGAGC
GCACGGCGATTATGCCTGTAAATAAGCGATTTCCAGTCGCCGACTTGATG
AGCGCGTGTCAGTATTATGTGCAGAGGACGAATAGGAGGATTAGCTTCGA
GTGGGCTTTGATTAGTGGCCAGAACGATAGCCCCAAGGTGGCTGATGAGT
TGGGGCAATTGCTGGCGCCGCTGAAAGGGAAGTGTCACGTAAATGTGATA
AATGTTAATCCAACGACGGGATTTGATGGGAAGCCGGGGGGGAAGGCGTC
GATGGAGCGATTCTTGAATATCTTGAATGAAGATTGGGGGATTCCGGCGA
CCATGAGGGTAAGGAGAAAGGTATATGCGAGGTTCAAACCGGGGTCTTAC
TCTCTCCCTTTTTTGTTCGTACTTGTGCCATACCTGCGAGGCTTTGTTTT
CCGTGAGATATGTCGGAATAACTTGAATGAGGATTGGGGGGGTTCTGGCG
ACCAGGAGGGTGAGGAGGAGGAGAGGGATTTCCTGGGCTCAATCTTCCCT
TTCTTGTATATGACATTTCTGGCATCTCTATCATTCACCTCTCTATTGAG
GAGGCCAGTGATCTTTGTCGGCTATTTCTCGTGGCCGCCCTGAATTTTTT
CATTGTTTCACGCCCTCCTTTCGACCTCTACACACATTTCTTTAGGTGAG
GCGCGGAATCGACATCAATGCCGGATGTGGCCAGCTGAAGAATGAATTAC
TGGCCAAGGAGATCTTGGAGGGAGGGGGTAGGGCGAACCCAGGTGTCCGG
ACAATATTGGGGAAAGTGGTGGTGATGGAAAACAAGGGGTCGACGGAAGA
AGAGTAA

Coding sequence (CDS) from alignment at scaffold_13:214783..216289+

>mRNA_5346 ID=mRNA_5346|Name=jgi.p|Nanoce1779_2|529255|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_13:214783..216289+ (Nannochloropsis oceanica)
ATGGACATTTACACGCTGACGGAGAAGGAGATTGAGGATTTTTTGCAGAC
GCAGCTGAAGCAGCCTCGATACCGAGCCAAGCAAGTGTATGCGTGGCTGT
ATCAACGCGGGGCCACCTCGTTCGAGGTAATGAACGACTTGCCCAAGGCG
TTGCGTGCAGGCCTCGCAGAGCATTTTTCTTTGGGCTGCTTAGAGATGGC
TTTTGAGCAGGTTAGCAAGGATGGGACAATTAAACGTGCATATCGCTTGG
CGGACGGTCAGTTGATTGAGTCGGTTTTGATGCCTTATGAGGATGGACGA
CGCACGGCCTGCATTTCGAGCCAGGCGGGATGTGCGATGGGCTGTGCATT
TTGTCAAACGGGGCAGATGGGTTTTGCACGGCAGTTGACCGACGCAGAAA
TTTTTCAGCAGGCGCTGTTTTTCTCCCGGGACTTAGCGAAGGAAGGGTTG
TATCGACTATCAAATGTGGTGTTTATGGGGGAGGGAGAGCCTCTGAATAA
CAGAAAAATGGTTTTCAGTGCGGTGCGTCGGTTGAATTCTGATTTGAAGA
TTGGGGCGAGGCATATCACTGTGTCGACGGTGGGTTTGGCTCCGAGGATC
AGGGACTTGGCGGATACAGTTGATGATCTTCAGGGGGAGGGGGGGTTGCT
CTCGCAGATAAAGTTGGCTGTATCTTTGCATGCCACCACGGATAGGGAGC
GCACGGCGATTATGCCTGTAAATAAGCGATTTCCAGTCGCCGACTTGATG
AGCGCGTGTCAGTATTATGTGCAGAGGACGAATAGGAGGATTAGCTTCGA
GTGGGCTTTGATTAGTGGCCAGAACGATAGCCCCAAGGTGGCTGATGAGT
TGGGGCAATTGCTGGCGCCGCTGAAAGGGAAGTGTCACGTAAATGTGATA
AATGTTAATCCAACGACGGGATTTGATGGGAAGCCGGGGGGGAAGGCGTC
GATGGAGCGATTCTTGAATATCTTGAATGAAGATTGGGGGATTCCGGCGA
CCATGAGGGTGAGGCGCGGAATCGACATCAATGCCGGATGTGGCCAGCTG
AAGAATGAATTACTGGCCAAGGAGATCTTGGAGGGAGGGGGTAGGGCGAA
CCCAGGTGTCCGGACAATATTGGGGAAAGTGGTGGTGATGGAAAACAAGG
GGTCGACGGAAGAAGAGTAAATGGACATTTACACGCTGACGGAGAAGGAG
ATTGAGGATTTTTTGCAGACGCAGCTGAAGCAGCCTCGATACCGAGCCAA
GCAAGTGTATGCGTGGCTGTATCAACGCGGGGCCACCTCGTTCGAGGTAA
TGAACGACTTGCCCAAGGCGTTGCGTGCAGGCCTCGCAGAGCATTTTTCT
TTGGGCTGCTTAGAGATGGCTTTTGAGCAGGTTAGCAAGGATGGGACAAT
TAAACGTGCATATCGCTTGGCGGACGGTCAGTTGATTGAGTCGGTTTTGA
TGCCTTATGAGGATGGACGACGCACGGCCTGCATTTCGAGCCAGGCGGGA
TGTGCGATGGGCTGTGCATTTTGTCAAACGGGGCAGATGGGTTTTGCACG
GCAGTTGACCGACGCAGAAATTTTTCAGCAGGCGCTGTTTTTCTCCCGGG
ACTTAGCGAAGGAAGGGTTGTATCGACTATCAAATGTGGTGTTTATGGGG
GAGGGAGAGCCTCTGAATAACAGAAAAATGGTTTTCAGTGCGGTGCGTCG
GTTGAATTCTGATTTGAAGATTGGGGCGAGGCATATCACTGTGTCGACGG
TGGGTTTGGCTCCGAGGATCAGGGACTTGGCGGATACAGTTGATGATCTT
CAGGGGGAGGGGGGGTTGCTCTCGCAGATAAAGTTGGCTGTATCTTTGCA
TGCCACCACGGATAGGGAGCGCACGGCGATTATGCCTGTAAATAAGCGAT
TTCCAGTCGCCGACTTGATGAGCGCGTGTCAGTATTATGTGCAGAGGACG
AATAGGAGGATTAGCTTCGAGTGGGCTTTGATTAGTGGCCAGAACGATAG
CCCCAAGGTGGCTGATGAGTTGGGGCAATTGCTGGCGCCGCTGAAAGGGA
AGTGTCACGTAAATGTGATAAATGTTAATCCAACGACGGGATTTGATGGG
AAGCCGGGGGGGAAGGCGTCGATGGAGCGATTCTTGAATATCTTGAATGA
AGATTGGGGGATTCCGGCGACCATGAGGGTGAGGCGCGGAATCGACATCA
ATGCCGGATGTGGCCAGCTGAAGAATGAATTACTGGCCAAGGAGATCTTG
GAGGGAGGGGGTAGGGCGAACCCAGGTGTCCGGACAATATTGGGGAAAGT
GGTGGTGATGGAAAACAAGGGGTCGACGGAAGAAGAGTAA

Synonyms

Publications