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Properties
| Property Name | Value |
|---|
| TranscriptId | 592288 |
| Track | FilteredModels2 |
| ProteinId | 592202 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:206827..208693 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5343 ID=mRNA_5343|Name=jgi.p|Nanoce1779_2|592202|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp
AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG
GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTACTACGGTTCCAAGCT
TAAAACAAACGCCGACCTCAAGACTACTGCTTGTTGTACCGCCACCGTTC
CTAAGAAGCTCCGAAGACTCCTCAAAGATGTGCACGACGAAGTTCTCGAA
AAGTTTTACGGGTGCGGCAGCCCTCTGCCTGAGGGCCTGGAGGGATGCAC
GGTGCTGGATATTGGCTCCGGCTCGGGCCGGGATTGCTTCGTTGCCTCAC
AGCTTGTAGGTCCGAACGGCACGGTGATCGGCGTGGACATGACGGACGAG
CAGCTCGCCGTCGCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGG
GTACAGCAAGCCCAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTAC
TTTCCGTGGGGATCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGT
GTGTTGAACCTCTCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAG
GGTGCTGAAGCCAGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATC
GGCGCTTGCCGGCGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGT
CTAGGTGGGGCGTTGTATATTGAGGATTTCCGTCGCCTCCTTGTTGACTT
AGGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCG
ACGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACG
TTGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGG
ACAGTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTG
ACTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGT
GGGAATACGGCCTTGATGCTAACCGACACGCGCTTCGCCCCGCACTTTAA
GGTGGTGGGAGATACGTCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTG
TGTGTGCCCCCCCTCCTGAAGAGTCATCGAACAGCAAATTTGGAGCGTGT
TGTTGAGCGAGGGAGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAA
TGGCTTAACTGAAAGGATCGAGGAAATCCGAGC back to topprotein sequence of jgi.p|Nanoce1779_2|592202 >mRNA_5343-protein ID=mRNA_5343-protein|Name=jgi.p|Nanoce1779_2|592202|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSLSVAAEANGIKENVIEYYGSKLKTNADLKTTACCTATVPKKLRRLLKD
VHDEVLEKFYGCGSPLPEGLEGCTVLDIGSGSGRDCFVASQLVGPNGTVI
GVDMTDEQLAVARAHVDWHMQRYGYSKPNVTFLKGVIEDLLSVGIQDATV
DVCVSNCVLNLSPNKPQVLSEIFRVLKPGGELYFSDVFCDRRLPAALKGD
QEVLGECLGGALYIEDFRRLLVDLGCKDFRVMDKAEIQVTDEGIAAKVGL
ARFHSLTLRCFKLPGLEDRCEEFGQFATYKGTMTGMPVAFDLDDSHRFET
GRAVAVCGNTALMLTDTRFAPHFKVVGDTSVHYGLFQGSGVCAPPPEESS
NSKFGACC* back to topmRNA from alignment at scaffold_13:206827..208693- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5343 ID=mRNA_5343|Name=jgi.p|Nanoce1779_2|592202|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_13:206827..208693- (Nannochloropsis oceanica)
AGGGTCCAAATTATCTGTCCCTAGCAGCCATGTCATTATCGGTGGCCGCG
GAGGCGAATGGTATCAAGGAGAACGTCATAGAGTAAGTGCTATCTTATCG
TCGTCAACATCCCCTCCACCACCCTCTCCTCATAGTGAATAGTGAACAGG
AGTATGACGGTAGTGTAGCTTTGGGTTGTCTGGAAGACAGTTCCTAGAAA
AGCCGCTTAGATGATTATTACGAGGGTGGCGCACGAAATGATGTTCGATC
AAAGCGTACGGCGTGCCCTCTCTCTTCGAACCGACCTTATCATACACTTT
CTACATACAACACAGGTACTACGGTTCCAAGCTTAAAACAAACGCCGACC
TCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGA
CTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGG
CAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCT
CCGGCTCGGGCCGGGATTGCTTCGTTGGTACGTGTCTATTTCTTGATTGA
AGAATCAGGATTAGGAGGATCATGCGGTCGGTCGAGCACTCGGGGACGGA
AACGCATTCCGTGCGAGGGGATGTAGGTGACAGGCGGGATTGAGCATTTC
TTCTGCTTGCTATATGCGCGTCGTCCATCTTCCACATTTTTCTGCATCGT
TGCTTACTATCCTTGCCCTCCTTTCGTCATAGCCTCACAGCTTGTAGGTC
CGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTCGCCGTC
GCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAGCAAGCC
CAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCGTGGGGA
TCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTGAACCTC
TCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCTGAAGCC
AGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCTTGCCGG
CGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCG
TTGTATATTGGTACGTTGAGAGCGAGGGAGGGAGGGAGGGAGTAGAACCC
ATCACCTCACGCATCCGCCCTTCTCTCCCTCCGCACTTCCCTCCTTTCCT
CCCTCCCTTCCCCCTAAAAAGAGGATTTCCGTCGCCTCCTTGTTGACTTA
GGCTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCGA
CGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACGT
TGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGA
CAGTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTGA
CTTGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTG
GGAATACGGCCTTGATGGTACGTGGATGAAGAGGGAGTGGTAGAGGGAGA
GAGTGTGGAGTGCTTGTGATGTGAGTCGCCAACTTGTGTACATGCATTTG
TGCCATCAACCTGGTCTTGCTCTAAATTAACTCCCCTTTCTCCCCCGTAC
AGCTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACG
TCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCC
TGAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAGCGAGGGAGA
AGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAATGGCTTAACTGAAAGG
ATCGAGGAAATCCGAGC back to topCoding sequence (CDS) from alignment at scaffold_13:206827..208693- >mRNA_5343 ID=mRNA_5343|Name=jgi.p|Nanoce1779_2|592202|organism=Nannochloropsis oceanica|type=CDS|length=5385bp|location=Sequence derived from alignment at scaffold_13:206827..208693- (Nannochloropsis oceanica)
CTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATACGTC
GGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCTCCTG
AAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAAGGATTTCCGTC
GCCTCCTTGTTGACTTAGGCTGCAAAGACTTCCGGGTCATGGACAAGGCA
GAGATCCAAGTGACCGACGAGGGCATAGCGGCTAAAGTGGGCCTTGCCCG
ATTTCATTCCCTGACGTTGCGTTGTTTCAAGCTGCCGGGGCTTGAGGACC
GGTGTGAGGAGTTCGGACAGTTTGCGACGTACAAGGGGACGATGACGGGG
ATGCCGGTGGCGTTTGACTTGGACGACTCGCACCGGTTTGAGACGGGGCG
GGCGGTGGCTGTGTGTGGGAATACGGCCTTGATGCCTCACAGCTTGTAGG
TCCGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTCGCCG
TCGCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAGCAAG
CCCAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCGTGGG
GATCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTGAACC
TCTCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCTGAAG
CCAGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCTTGCC
GGCGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGTGGGG
CGTTGTATATTGGTACTACGGTTCCAAGCTTAAAACAAACGCCGACCTCA
AGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAGACTC
CTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCGGCAG
CCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGCTCCG
GCTCGGGCCGGGATTGCTTCGTTGATGTCATTATCGGTGGCCGCGGAGGC
GAATGGTATCAAGGAGAACGTCATAGACTAACCGACACGCGCTTCGCCCC
GCACTTTAAGGTGGTGGGAGATACGTCGGTGCATTACGGCCTCTTTCAGG
GGTCGGGTGTGTGTGCCCCCCCTCCTGAAGAGTCATCGAACAGCAAATTT
GGAGCGTGTTGTTGAAGGATTTCCGTCGCCTCCTTGTTGACTTAGGCTGC
AAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCGACGAGGG
CATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACGTTGCGTT
GTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGACAGTTT
GCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTGACTTGGA
CGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTGGGAATA
CGGCCTTGATGCCTCACAGCTTGTAGGTCCGAACGGCACGGTGATCGGCG
TGGACATGACGGACGAGCAGCTCGCCGTCGCCCGCGCCCACGTGGATTGG
CACATGCAACGCTACGGGTACAGCAAGCCCAATGTCACTTTCCTCAAAGG
CGTCATCGAAGACTTACTTTCCGTGGGGATCCAAGACGCGACTGTGGACG
TATGCGTCAGCAATTGTGTGTTGAACCTCTCCCCGAACAAGCCTCAAGTT
TTATCAGAGATTTTCAGGGTGCTGAAGCCAGGGGGCGAGTTGTACTTTTC
CGATGTTTTTTGCGATCGGCGCTTGCCGGCGGCTTTAAAGGGGGATCAAG
AGGTTCTGGGAGAGTGTCTAGGTGGGGCGTTGTATATTGGTACTACGGTT
CCAAGCTTAAAACAAACGCCGACCTCAAGACTACTGCTTGTTGTACCGCC
ACCGTTCCTAAGAAGCTCCGAAGACTCCTCAAAGATGTGCACGACGAAGT
TCTCGAAAAGTTTTACGGGTGCGGCAGCCCTCTGCCTGAGGGCCTGGAGG
GATGCACGGTGCTGGATATTGGCTCCGGCTCGGGCCGGGATTGCTTCGTT
GATGTCATTATCGGTGGCCGCGGAGGCGAATGGTATCAAGGAGAACGTCA
TAGACTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGAGATA
CGTCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCCCCCT
CCTGAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAAGGATTTC
CGTCGCCTCCTTGTTGACTTAGGCTGCAAAGACTTCCGGGTCATGGACAA
GGCAGAGATCCAAGTGACCGACGAGGGCATAGCGGCTAAAGTGGGCCTTG
CCCGATTTCATTCCCTGACGTTGCGTTGTTTCAAGCTGCCGGGGCTTGAG
GACCGGTGTGAGGAGTTCGGACAGTTTGCGACGTACAAGGGGACGATGAC
GGGGATGCCGGTGGCGTTTGACTTGGACGACTCGCACCGGTTTGAGACGG
GGCGGGCGGTGGCTGTGTGTGGGAATACGGCCTTGATGCCTCACAGCTTG
TAGGTCCGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCAGCTC
GCCGTCGCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGTACAG
CAAGCCCAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTTTCCG
TGGGGATCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGTGTTG
AACCTCTCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGGTGCT
GAAGCCAGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGGCGCT
TGCCGGCGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCTAGGT
GGGGCGTTGTATATTGGTACTACGGTTCCAAGCTTAAAACAAACGCCGAC
CTCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCCGAAG
ACTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGGTGCG
GCAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATATTGGC
TCCGGCTCGGGCCGGGATTGCTTCGTTGATGTCATTATCGGTGGCCGCGG
AGGCGAATGGTATCAAGGAGAACGTCATAGACTAACCGACACGCGCTTCG
CCCCGCACTTTAAGGTGGTGGGAGATACGTCGGTGCATTACGGCCTCTTT
CAGGGGTCGGGTGTGTGTGCCCCCCCTCCTGAAGAGTCATCGAACAGCAA
ATTTGGAGCGTGTTGTTGAAGGATTTCCGTCGCCTCCTTGTTGACTTAGG
CTGCAAAGACTTCCGGGTCATGGACAAGGCAGAGATCCAAGTGACCGACG
AGGGCATAGCGGCTAAAGTGGGCCTTGCCCGATTTCATTCCCTGACGTTG
CGTTGTTTCAAGCTGCCGGGGCTTGAGGACCGGTGTGAGGAGTTCGGACA
GTTTGCGACGTACAAGGGGACGATGACGGGGATGCCGGTGGCGTTTGACT
TGGACGACTCGCACCGGTTTGAGACGGGGCGGGCGGTGGCTGTGTGTGGG
AATACGGCCTTGATGCCTCACAGCTTGTAGGTCCGAACGGCACGGTGATC
GGCGTGGACATGACGGACGAGCAGCTCGCCGTCGCCCGCGCCCACGTGGA
TTGGCACATGCAACGCTACGGGTACAGCAAGCCCAATGTCACTTTCCTCA
AAGGCGTCATCGAAGACTTACTTTCCGTGGGGATCCAAGACGCGACTGTG
GACGTATGCGTCAGCAATTGTGTGTTGAACCTCTCCCCGAACAAGCCTCA
AGTTTTATCAGAGATTTTCAGGGTGCTGAAGCCAGGGGGCGAGTTGTACT
TTTCCGATGTTTTTTGCGATCGGCGCTTGCCGGCGGCTTTAAAGGGGGAT
CAAGAGGTTCTGGGAGAGTGTCTAGGTGGGGCGTTGTATATTGGTACTAC
GGTTCCAAGCTTAAAACAAACGCCGACCTCAAGACTACTGCTTGTTGTAC
CGCCACCGTTCCTAAGAAGCTCCGAAGACTCCTCAAAGATGTGCACGACG
AAGTTCTCGAAAAGTTTTACGGGTGCGGCAGCCCTCTGCCTGAGGGCCTG
GAGGGATGCACGGTGCTGGATATTGGCTCCGGCTCGGGCCGGGATTGCTT
CGTTGATGTCATTATCGGTGGCCGCGGAGGCGAATGGTATCAAGGAGAAC
GTCATAGACTAACCGACACGCGCTTCGCCCCGCACTTTAAGGTGGTGGGA
GATACGTCGGTGCATTACGGCCTCTTTCAGGGGTCGGGTGTGTGTGCCCC
CCCTCCTGAAGAGTCATCGAACAGCAAATTTGGAGCGTGTTGTTGAAGGA
TTTCCGTCGCCTCCTTGTTGACTTAGGCTGCAAAGACTTCCGGGTCATGG
ACAAGGCAGAGATCCAAGTGACCGACGAGGGCATAGCGGCTAAAGTGGGC
CTTGCCCGATTTCATTCCCTGACGTTGCGTTGTTTCAAGCTGCCGGGGCT
TGAGGACCGGTGTGAGGAGTTCGGACAGTTTGCGACGTACAAGGGGACGA
TGACGGGGATGCCGGTGGCGTTTGACTTGGACGACTCGCACCGGTTTGAG
ACGGGGCGGGCGGTGGCTGTGTGTGGGAATACGGCCTTGATGCCTCACAG
CTTGTAGGTCCGAACGGCACGGTGATCGGCGTGGACATGACGGACGAGCA
GCTCGCCGTCGCCCGCGCCCACGTGGATTGGCACATGCAACGCTACGGGT
ACAGCAAGCCCAATGTCACTTTCCTCAAAGGCGTCATCGAAGACTTACTT
TCCGTGGGGATCCAAGACGCGACTGTGGACGTATGCGTCAGCAATTGTGT
GTTGAACCTCTCCCCGAACAAGCCTCAAGTTTTATCAGAGATTTTCAGGG
TGCTGAAGCCAGGGGGCGAGTTGTACTTTTCCGATGTTTTTTGCGATCGG
CGCTTGCCGGCGGCTTTAAAGGGGGATCAAGAGGTTCTGGGAGAGTGTCT
AGGTGGGGCGTTGTATATTGGTACTACGGTTCCAAGCTTAAAACAAACGC
CGACCTCAAGACTACTGCTTGTTGTACCGCCACCGTTCCTAAGAAGCTCC
GAAGACTCCTCAAAGATGTGCACGACGAAGTTCTCGAAAAGTTTTACGGG
TGCGGCAGCCCTCTGCCTGAGGGCCTGGAGGGATGCACGGTGCTGGATAT
TGGCTCCGGCTCGGGCCGGGATTGCTTCGTTGATGTCATTATCGGTGGCC
GCGGAGGCGAATGGTATCAAGGAGAACGTCATAGA back to top
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