jgi.p|Nanoce1779_2|592197, mRNA_5341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592197
Unique NamemRNA_5341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length983
Alignment locationscaffold_13:204106..205088 -

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Properties
Property NameValue
TranscriptId592283
TrackFilteredModels2
ProteinId592197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:204106..205088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592197gene_5341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592197mRNA_5341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5341CDS_5341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5341 ID=mRNA_5341|Name=jgi.p|Nanoce1779_2|592197|organism=Nannochloropsis oceanica|type=mRNA|length=983bp
CACACGATGGAAAGCTGCCAAACGTTGAACCGTGACGCTTTTTTCCGCGC
GTCAACTTGGATGTCCGACACTGTTGCAGATGCATCACAGGGCACTCACA
GCAAACACAAACACTCCTGCCTTGCTCACTCTCCCTCCTTCCTGACCCTG
CGAAATAGGAATCAGGAATGACGACGCGGGCACCATCAAGGCGACACCAA
CTAGGGACTGTCCTCGCCTCTTTCATGTCCCCACTTATTCTCGGCGGCAT
TCCGCACACCACCCTGGCCTTTGTCCCAGTCACCCCCAGCTCTGCAGCTG
CTGCGGCGCGTACACTATCCTCTTTCCTGCTCTTTGTCAGTGTCAAGAAC
ACTGCCAAAATCGTTAATCCTGACAACGACATTTTGCAGCGAGTGGCGCC
GGGCGAGCAGGCCCACACACGCCCGTGTGGCTGATGCAGCAGGTGGAACA
GTACATGACTGTCTTTCAATCGTAAAGTTAGAAATATCCCTCTCGATAAC
GGTCGGCAATGCCGTGCATGGCCAATGCGTTGTCAATGCAAAATTTGGAG
GCGATTGAGGAAGATGGGGTGATCATGTTCTCGGGCTTCTTCACCCCTCT
GCCTGTCTTGGGCACCAACTTTGATGTGCTCACAGTCGAAGGGAAACTTA
TCCGCCGATACGCATGACCAATCCGCACTAGATCTAAGCGAGGCCGGTGT
CCAGAAAAAATGAGCTGCCATTAGGCAGCATTTGGACCCCGAGGGAGTGT
GATGAAGCGGAACGAGGAGGCAGTAGACATATGAGACGGGCGGCCGCAAA
GCGGAGGATGCGACAGGTACACACGCAAAGGCCGTGTATTGAATTGTACA
ATGATGAAAGCCTGTTCGAATGAGCCGGCCACCGTTTATTGTCGATCAAT
CAGCGAACAAGAAAAAAGAACACCACTGCGAATTCTCCCAAACGAGTTCA
CAACCAAAAACAATCAAACAATCAATTTCTCCC
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protein sequence of jgi.p|Nanoce1779_2|592197

>mRNA_5341-protein ID=mRNA_5341-protein|Name=jgi.p|Nanoce1779_2|592197|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MTTRAPSRRHQLGTVLASFMSPLILGGIPHTTLAFVPVTPSSAAAAARTL
SSFLLFVSVKNTAKIVNPDNDILQRVAPGEQAHTRPCG*
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mRNA from alignment at scaffold_13:204106..205088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5341 ID=mRNA_5341|Name=jgi.p|Nanoce1779_2|592197|organism=Nannochloropsis oceanica|type=mRNA|length=983bp|location=Sequence derived from alignment at scaffold_13:204106..205088- (Nannochloropsis oceanica)
CACACGATGGAAAGCTGCCAAACGTTGAACCGTGACGCTTTTTTCCGCGC
GTCAACTTGGATGTCCGACACTGTTGCAGATGCATCACAGGGCACTCACA
GCAAACACAAACACTCCTGCCTTGCTCACTCTCCCTCCTTCCTGACCCTG
CGAAATAGGAATCAGGAATGACGACGCGGGCACCATCAAGGCGACACCAA
CTAGGGACTGTCCTCGCCTCTTTCATGTCCCCACTTATTCTCGGCGGCAT
TCCGCACACCACCCTGGCCTTTGTCCCAGTCACCCCCAGCTCTGCAGCTG
CTGCGGCGCGTACACTATCCTCTTTCCTGCTCTTTGTCAGTGTCAAGAAC
ACTGCCAAAATCGTTAATCCTGACAACGACATTTTGCAGCGAGTGGCGCC
GGGCGAGCAGGCCCACACACGCCCGTGTGGCTGATGCAGCAGGTGGAACA
GTACATGACTGTCTTTCAATCGTAAAGTTAGAAATATCCCTCTCGATAAC
GGTCGGCAATGCCGTGCATGGCCAATGCGTTGTCAATGCAAAATTTGGAG
GCGATTGAGGAAGATGGGGTGATCATGTTCTCGGGCTTCTTCACCCCTCT
GCCTGTCTTGGGCACCAACTTTGATGTGCTCACAGTCGAAGGGAAACTTA
TCCGCCGATACGCATGACCAATCCGCACTAGATCTAAGCGAGGCCGGTGT
CCAGAAAAAATGAGCTGCCATTAGGCAGCATTTGGACCCCGAGGGAGTGT
GATGAAGCGGAACGAGGAGGCAGTAGACATATGAGACGGGCGGCCGCAAA
GCGGAGGATGCGACAGGTACACACGCAAAGGCCGTGTATTGAATTGTACA
ATGATGAAAGCCTGTTCGAATGAGCCGGCCACCGTTTATTGTCGATCAAT
CAGCGAACAAGAAAAAAGAACACCACTGCGAATTCTCCCAAACGAGTTCA
CAACCAAAAACAATCAAACAATCAATTTCTCCC
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Coding sequence (CDS) from alignment at scaffold_13:204106..205088-

>mRNA_5341 ID=mRNA_5341|Name=jgi.p|Nanoce1779_2|592197|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_13:204106..205088- (Nannochloropsis oceanica)
ATGACGACGCGGGCACCATCAAGGCGACACCAACTAGGGACTGTCCTCGC
CTCTTTCATGTCCCCACTTATTCTCGGCGGCATTCCGCACACCACCCTGG
CCTTTGTCCCAGTCACCCCCAGCTCTGCAGCTGCTGCGGCGCGTACACTA
TCCTCTTTCCTGCTCTTTGTCAGTGTCAAGAACACTGCCAAAATCGTTAA
TCCTGACAACGACATTTTGCAGCGAGTGGCGCCGGGCGAGCAGGCCCACA
CACGCCCGTGTGGCTGA
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Synonyms
Publications