jgi.p|Nanoce1779_2|592195, mRNA_5340 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592195
Unique NamemRNA_5340
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_13:203463..204113 +

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Properties
Property NameValue
TranscriptId592281
TrackFilteredModels2
ProteinId592195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:203463..204113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592195gene_5340Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592195mRNA_5340-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5340CDS_5340Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5340 ID=mRNA_5340|Name=jgi.p|Nanoce1779_2|592195|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
TATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGACCGAGCAGG
AGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAACGAAAGCGAC
ACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGCACGCTTCAT
CTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAGTGGACCTGA
TGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAGAGACGGAAG
CGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAAGTGTGTGAT
TACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGACAGCCATATG
CGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAATATATGCCC
CAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGATGAAGGGAT
GGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAGAGTTGAGAA
AGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTTGGGTAGGTG
GAGGGAGTAAGGAAGGAGGGGAGGGAAGACAGGAAAGAGGGAGAAAGTAG
TATTACAAAGTGTTCAATGAAAGCAGATAAGCGAAAATGTGACGGGAGAA
A
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protein sequence of jgi.p|Nanoce1779_2|592195

>mRNA_5340-protein ID=mRNA_5340-protein|Name=jgi.p|Nanoce1779_2|592195|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MFTQEEMLAEACKTEQENTRWLLARKRMQNESDTTAHAPKRQVKLVARFI
SRRGGYTVINFPEVDLMPAILKGGEGGKEERRKRLRTEDGSGTNIRKCVI
TGLPARYLDPLTRQPYANREAFKSLRADSQYMPQEEDEGEGEDEDEDEGM
GVPADDEEGGVKEELRKGSSMSSSLTNESFG*
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mRNA from alignment at scaffold_13:203463..204113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5340 ID=mRNA_5340|Name=jgi.p|Nanoce1779_2|592195|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at scaffold_13:203463..204113+ (Nannochloropsis oceanica)
TATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGACCGAGCAGG
AGAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAACGAAAGCGAC
ACCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGCACGCTTCAT
CTCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAGTGGACCTGA
TGCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAGAGACGGAAG
CGATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAAGTGTGTGAT
TACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGACAGCCATATG
CGAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAATATATGCCC
CAGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGATGAAGGGAT
GGGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAGAGTTGAGAA
AGGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTTGGGTAGGTG
GAGGGAGTAAGGAAGGAGGGGAGGGAAGACAGGAAAGAGGGAGAAAGTAG
TATTACAAAGTGTTCAATGAAAGCAGATAAGCGAAAATGTGACGGGAGAA
A
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Coding sequence (CDS) from alignment at scaffold_13:203463..204113+

>mRNA_5340 ID=mRNA_5340|Name=jgi.p|Nanoce1779_2|592195|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_13:203463..204113+ (Nannochloropsis oceanica)
ATGTTTACCCAGGAGGAAATGCTGGCCGAGGCGTGTAAGACCGAGCAGGA
GAATACCCGATGGCTGCTTGCGAGGAAGAGGATGCAAAACGAAAGCGACA
CCACGGCGCATGCTCCCAAAAGGCAAGTCAAGCTGGTTGCACGCTTCATC
TCAAGGAGGGGAGGATATACCGTAATAAACTTTCCAGAAGTGGACCTGAT
GCCGGCGATTTTGAAAGGGGGGGAAGGAGGGAAGGAGGAGAGACGGAAGC
GATTGAGGACAGAGGACGGGAGTGGGACAAATATCAGAAAGTGTGTGATT
ACGGGATTGCCTGCCCGGTATCTTGATCCTCTCACCAGACAGCCATATGC
GAATCGGGAGGCGTTCAAGTCGTTAAGGGCCGATTCGCAATATATGCCCC
AGGAAGAGGACGAGGGAGAGGGCGAGGACGAAGACGAGGATGAAGGGATG
GGGGTGCCGGCTGATGATGAGGAGGGAGGGGTGAAGGAAGAGTTGAGAAA
GGGGTCGTCGATGAGTTCGTCTCTAACGAATGAATCTTTTGGGTAG
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Synonyms
Publications