jgi.p|Nanoce1779_2|592192, mRNA_5339 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592192
Unique Name	mRNA_5339
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1682
Alignment location	scaffold_13:200768..202449 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592278
Track	FilteredModels2
ProteinId	592192

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:200768..202449 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592192	gene_5339	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592192	mRNA_5339-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5339	CDS_5339	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:200768..202449-
coding sequence from alignment at scaffold_13:200768..202449-

mRNA sequence

>mRNA_5339 ID=mRNA_5339|Name=jgi.p|Nanoce1779_2|592192|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp
ACAGAGAAACATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACAT
CCATCTGGACCTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAG
CTGGAGGTTGGAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAA
AACCCTAGACCAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGC
CACGTGTTGCGGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAG
GAGAGCGGCGTGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGAC
AGGAGTCGCCTATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCG
CGGAGCTCTGGCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATC
CTACCGTTGCTGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGAT
GCTTGCGGCAGCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAG
GCAATTACGATGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTG
AAGACGTTTGGGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGG
ACCGGTGCTGCAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATG
CAAAAGCGCATGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAG
CCGCTACGACAAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTC
AATTGAGTTTAGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTG
CTGAGTGTGTTGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTG
GGGCGGAGGACCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGC
CTGCTTGGAAGAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAG
CCAGGTCAATGGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCC
ATCGAAAAGTTCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCAC
CGAGGCTATTTTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAG
AGGTTCTTACCAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACA
GGACGCCGCGTCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCC
ATTTACGTCACAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAG
CATCTGCTGGCATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAG
AAAATGTTAGACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAA
CTTGAATAATGCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACA
GCACATCTTCTTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGG
TATGTAGATACGGAGGGAGGTAGTGTGGATGCGGTGATGTCAGAGCTAGA
TACAGTGTTAGGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTC
GGGCAAGGCGACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAG
GAAATTGAGATATAAAGACATTATGTGCATAGGCGAAGAAAAAGGAAGAA
TTGTGAAGCTTGCGTGATTCCACGTTACATAA

protein sequence of jgi.p|Nanoce1779_2|592192

>mRNA_5339-protein ID=mRNA_5339-protein|Name=jgi.p|Nanoce1779_2|592192|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MVDNTGAKPESPTSIWTSRIPKEWALLDEKLEVGSIPSGSRISVLSKTLD
QERGVCKCTFQVVPRVAEREEEEGELFLAEESGVVLEIDASSRAAGTGVA
YPFVPPTLKVVRGAELWPSEIVRSEDQTMILPLLAAWTPKLGLADLMLAA
AEALQAHAEAHAEGNYDESTTFEPGDALSLKTFGDRLFRGTMAQQGGPVL
QRYLGVTDSWLLNAKAHETKLETVFVIKAQPLRQVSKLKYKREMSISIEF
RDGDRWTFAMPRAAECVEAIQASLREKGVVGRRTSQAALDHVARAKACLE
EAQLREAALLECGARSMEKVQGVCDLYKHAIEKFATVSTDENKQKTTEAI
FLLQSFLSRPEVQEVLTNNSRSPAVCAASTGRRVASLPTLPKVKFNPFTS
QPKTKKGEVLPRSASAGMVSGDDDGLAREEKMLDPLSNRLKELLDLNLNN
AVAAEGDGRDRGDSTSSLSASGCKGRNRGGYVDTEGGSVDAVMSELDTVL
GQAEKELENLNSPRARRPMARTAAGEAEEEEIEI*

mRNA from alignment at scaffold_13:200768..202449-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5339 ID=mRNA_5339|Name=jgi.p|Nanoce1779_2|592192|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp|location=Sequence derived from alignment at scaffold_13:200768..202449- (Nannochloropsis oceanica)
ACAGAGAAACATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACAT
CCATCTGGACCTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAG
CTGGAGGTTGGAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAA
AACCCTAGACCAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGC
CACGTGTTGCGGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAG
GAGAGCGGCGTGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGAC
AGGAGTCGCCTATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCG
CGGAGCTCTGGCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATC
CTACCGTTGCTGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGAT
GCTTGCGGCAGCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAG
GCAATTACGATGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTG
AAGACGTTTGGGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGG
ACCGGTGCTGCAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATG
CAAAAGCGCATGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAG
CCGCTACGACAAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTC
AATTGAGTTTAGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTG
CTGAGTGTGTTGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTG
GGGCGGAGGACCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGC
CTGCTTGGAAGAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAG
CCAGGTCAATGGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCC
ATCGAAAAGTTCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCAC
CGAGGCTATTTTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAG
AGGTTCTTACCAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACA
GGACGCCGCGTCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCC
ATTTACGTCACAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAG
CATCTGCTGGCATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAG
AAAATGTTAGACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAA
CTTGAATAATGCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACA
GCACATCTTCTTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGG
TATGTAGATACGGAGGGAGGTAGTGTGGATGCGGTGATGTCAGAGCTAGA
TACAGTGTTAGGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTC
GGGCAAGGCGACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAG
GAAATTGAGATATAAAGACATTATGTGCATAGGCGAAGAAAAAGGAAGAA
TTGTGAAGCTTGCGTGATTCCACGTTACATAA

Coding sequence (CDS) from alignment at scaffold_13:200768..202449-

>mRNA_5339 ID=mRNA_5339|Name=jgi.p|Nanoce1779_2|592192|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_13:200768..202449- (Nannochloropsis oceanica)
ATGGTGGACAACACAGGGGCTAAGCCCGAATCCCCGACATCCATCTGGAC
CTCCCGTATACCCAAGGAGTGGGCTCTACTCGACGAAAAGCTGGAGGTTG
GAAGTATACCTTCAGGAAGCCGCATCAGTGTCCTGTCCAAAACCCTAGAC
CAAGAAAGGGGCGTGTGCAAGTGTACGTTTCAAGTGGTGCCACGTGTTGC
GGAAAGAGAAGAGGAAGAAGGTGAGTTGTTCTTGGCAGAGGAGAGCGGCG
TGGTACTTGAGATTGACGCGTCTTCCAGAGCAGCGGGGACAGGAGTCGCC
TATCCCTTTGTCCCACCAACCCTGAAAGTGGTGCGAGGCGCGGAGCTCTG
GCCAAGCGAAATTGTCCGAAGCGAGGATCAGACTATGATCCTACCGTTGC
TGGCGGCATGGACCCCTAAACTAGGCCTGGCGGACCTGATGCTTGCGGCA
GCCGAGGCCTTACAAGCACACGCGGAAGCACACGCGGAAGGCAATTACGA
TGAGAGCACCACCTTTGAACCCGGAGATGCCTTGAGCTTGAAGACGTTTG
GGGACCGACTTTTCCGGGGTACGATGGCTCAGCAGGGTGGACCGGTGCTG
CAGCGTTACTTAGGTGTGACGGACAGTTGGTTGTTGAATGCAAAAGCGCA
TGAGACGAAGCTAGAAACCGTGTTCGTGATCAAAGCTCAGCCGCTACGAC
AAGTGAGTAAGCTGAAGTATAAGAGAGAGATGTCGATTTCAATTGAGTTT
AGGGACGGCGATCGCTGGACGTTTGCGATGCCACGGGCTGCTGAGTGTGT
TGAGGCCATTCAAGCTTCCTTGCGAGAAAAGGGGGTGGTGGGGCGGAGGA
CCAGTCAAGCGGCGCTTGATCACGTAGCGCGCGCCAAGGCCTGCTTGGAA
GAAGCGCAACTGCGGGAAGCAGCCCTGTTGGAGTGTGGAGCCAGGTCAAT
GGAAAAGGTGCAGGGGGTTTGTGATTTATACAAGCACGCCATCGAAAAGT
TCGCCACGGTCTCGACAGATGAAAACAAGCAAAAAACCACCGAGGCTATT
TTCCTACTCCAATCCTTCCTCAGTCGTCCCGAGGTCCAAGAGGTTCTTAC
CAATAACTCTCGCTCACCTGCTGTTTGTGCTGCTTCTACAGGACGCCGCG
TCGCCTCTCTGCCCACCCTGCCCAAAGTCAAATTCAATCCATTTACGTCA
CAGCCAAAAACGAAAAAAGGCGAGGTGCTCCCCCGATCAGCATCTGCTGG
CATGGTATCAGGGGACGATGACGGGCTTGCCCGAGAGGAGAAAATGTTAG
ACCCGTTGTCTAATCGATTGAAAGAGTTGTTGGACCTCAACTTGAATAAT
GCCGTAGCCGCAGAGGGAGACGGGCGGGATCGAGGAGACAGCACATCTTC
TTTGTCTGCCAGTGGTTGCAAAGGACGGAATAGAGGCGGGTATGTAGATA
CGGAGGGAGGTAGTGTGGATGCGGTGATGTCAGAGCTAGATACAGTGTTA
GGGCAGGCCGAAAAAGAGCTGGAGAACCTGAATTCCCCTCGGGCAAGGCG
ACCGATGGCGAGGACGGCAGCGGGGGAGGCTGAAGAGGAGGAAATTGAGA
TATAA

Synonyms

Publications