jgi.p|Nanoce1779_2|63803, mRNA_5337 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|63803
Unique NamemRNA_5337
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length869
Alignment locationscaffold_13:196708..197576 +

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Properties
Property NameValue
TranscriptId63889
TrackFilteredModels2
ProteinId63803
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:196708..197576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63803gene_5337Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63803mRNA_5337-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5337CDS_5337Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5337 ID=mRNA_5337|Name=jgi.p|Nanoce1779_2|63803|organism=Nannochloropsis oceanica|type=mRNA|length=869bp
GGCATGGGATAATTTGTAGTTGTAGTTGTGATTTTGGAATCCTGCATTGA
CCTCCCCACCACCCTCCATTCGAAGCACTGCTTGCATTCCCTCCGTCCAT
TTTACTGTATACAAAGCATGTGTCTTTCGAACGACAACTGGCTTTGCAGT
GCATTTCCGTCTTTCCACTACGTTCCACGACTTTATCAGTCACTCTAATG
TGCCCAGTGATTTTTCTCCTCGACTCTCAGGCTAGCAGCCATTATCACCA
AATCGACCTCCCCACTCCCCGCTCACACGTCCCCATCTCTTACACTCATT
TACAGGCAACTATGGACGCCCAACTGGGCCAGCTTTGCGAGTTGTTGGGT
TCCCCCGACAAAGACACGCGAAAGCAAGCCGAAAATCACTATGTGCAGTA
CCGAGCAACCAATCTCAATCAATTGCTTCGGAGTCTCCTGCACATGATTA
GCACACAACCGAACCCTGTCTCTCCCCCTGTCAAAGCCATGGCCTGTATC
CTCCTACGGCAGCTATTCGACTCCAATATGCAAGGCGGGGTCCATGCCGC
GAGGACTATTATCGATGCAGCCGCACTCCAAGAATTGCGCCACGGTTTGG
TCGAAGCTGTCACAAACGAGCCATAACCTTGGCCCAAGTAGCCGCCACTT
TGCCTCCCGACAGCGCCTGGACCGAGCTGTTACAACTCACAGCGTAATTG
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGG
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protein sequence of jgi.p|Nanoce1779_2|63803

>mRNA_5337-protein ID=mRNA_5337-protein|Name=jgi.p|Nanoce1779_2|63803|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MCPVIFLLDSQASSHYHQIDLPTPRSHVPISYTHLQATMDAQLGQLCELL
GSPDKDTRKQAENHYVQYRATNLNQLLRSLLHMISTQPNPVSPPVKAMAC
ILLRQLFDSNMQGGVHAARTIIDAAALQELRHGLVEAVTNEP*
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mRNA from alignment at scaffold_13:196708..197576+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5337 ID=mRNA_5337|Name=jgi.p|Nanoce1779_2|63803|organism=Nannochloropsis oceanica|type=mRNA|length=869bp|location=Sequence derived from alignment at scaffold_13:196708..197576+ (Nannochloropsis oceanica)
GGCATGGGATAATTTGTAGTTGTAGTTGTGATTTTGGAATCCTGCATTGA
CCTCCCCACCACCCTCCATTCGAAGCACTGCTTGCATTCCCTCCGTCCAT
TTTACTGTATACAAAGCATGTGTCTTTCGAACGACAACTGGCTTTGCAGT
GCATTTCCGTCTTTCCACTACGTTCCACGACTTTATCAGTCACTCTAATG
TGCCCAGTGATTTTTCTCCTCGACTCTCAGGCTAGCAGCCATTATCACCA
AATCGACCTCCCCACTCCCCGCTCACACGTCCCCATCTCTTACACTCATT
TACAGGCAACTATGGACGCCCAACTGGGCCAGCTTTGCGAGTTGTTGGGT
TCCCCCGACAAAGACACGCGAAAGCAAGCCGAAAATCACTATGTGCAGTA
CCGAGCAACCAATCTCAATCAATTGCTTCGGAGTCTCCTGCACATGATTA
GCACACAACCGAACCCTGTCTCTCCCCCTGTCAAAGCCATGGCCTGTATC
CTCCTACGGCAGCTATTCGACTCCAATATGCAAGGCGGGGTCCATGCCGC
GAGGACTATTATCGATGCAGCCGCACTCCAAGAATTGCGCCACGGTTTGG
TCGAAGCTGTCACAAACGAGCCATAACCTTGGCCCAAGTAGCCGCCACTT
TGCCTCCCGACAGCGCCTGGACCGAGCTGTTACAACTCACAGCGTAATTG
ATGAGCGCCAGTACTGACGAACACCGCGAAACGGGCTATGAGCTCCTTGG
CAAAGTGGCAGAGTATCGCGCTTTCATGCTTACTCCTTTTGCTGACCAGC
TTCCACCCATGCTTCTTGAAGGGCTCCAAAACTCTACCTTTTCTTTGGTG
CGTCTGGCGGCCCTTAAGG
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Coding sequence (CDS) from alignment at scaffold_13:196708..197576+

>mRNA_5337 ID=mRNA_5337|Name=jgi.p|Nanoce1779_2|63803|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_13:196708..197576+ (Nannochloropsis oceanica)
ATGTGCCCAGTGATTTTTCTCCTCGACTCTCAGGCTAGCAGCCATTATCA
CCAAATCGACCTCCCCACTCCCCGCTCACACGTCCCCATCTCTTACACTC
ATTTACAGGCAACTATGGACGCCCAACTGGGCCAGCTTTGCGAGTTGTTG
GGTTCCCCCGACAAAGACACGCGAAAGCAAGCCGAAAATCACTATGTGCA
GTACCGAGCAACCAATCTCAATCAATTGCTTCGGAGTCTCCTGCACATGA
TTAGCACACAACCGAACCCTGTCTCTCCCCCTGTCAAAGCCATGGCCTGT
ATCCTCCTACGGCAGCTATTCGACTCCAATATGCAAGGCGGGGTCCATGC
CGCGAGGACTATTATCGATGCAGCCGCACTCCAAGAATTGCGCCACGGTT
TGGTCGAAGCTGTCACAAACGAGCCATAA
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Synonyms
Publications