jgi.p|Nanoce1779_2|556354, mRNA_5333 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556354
Unique NamemRNA_5333
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_13:189833..191181 +

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Properties
Property NameValue
TranscriptId556440
TrackFilteredModels2
ProteinId556354
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:189833..191181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556354gene_5333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556354mRNA_5333-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5333CDS_5333Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5333 ID=mRNA_5333|Name=jgi.p|Nanoce1779_2|556354|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
GCGCATGATCACAAGTCAGGTCCATCTTGGACCTTGCCGCACCGCATCGT
TCGTGGTTACATGCTTACTTCCTGAAGCACGCTTGTTATGGCCGCCCGGA
TCTATCCCTCGCGTCAGCGTCGTAATCTTTTCACCGTTCTGTGTCGGGAG
GTGTAATTAGGTGTTGTAAAGTGCATGCGTCTTGTCAACCTCCCCCTTGC
CATCTACCTGATTTTCGCTGTGCTTCTCCGTCTTTTCGCTTCCGTCCTTG
TGTCCAACGTGCAGCACCCATAGGCATGCACCATCCTCACGCCGCCAACA
ACTTGATTCATCTTTCCCGTCCCAATCCGCAATCCCAATCACAGGCAAAC
TCAAGGCCTTATTCGAAAAGCACGCCTCGCCCCTTTGTTTTCCTTCTTCG
CTGGAAGACAGCGCCTCAAGCGATACATCCCAACCGAACGCAAACAAGCA
ATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAATCCTCCAACT
GGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCCAAGCTTGAGA
CCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCGCCTTGACAAA
ATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAACTGGGCCACGG
GGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGGGCGGCTAAGC
ACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGACCAAATACTGC
GAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGCATCTCGAGAC
CAGGTTTTGTAAAATTAATGCAGAGAAAAGCCCGTACCTAGTGGAGAAAC
TAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAATCAGGAGACG
ACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCGATGAGTTTTC
CTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTGCTGTTTTATG
ACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAAGAAGGGGGTA
AATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAGGGAGGAAGGG
GGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTATGATAGTGAGG
GGAGTGGGGATGACGAGGAGTTTTAAATAAGACGAGAAGAGGGTACATTC
GCTCCGAGTATTTGCGCTGTGATTTGATGATATTGGGTGAAAAAAGAAGG
ACGTTTGAGGAGAGGAAGGATAAGATTATGTGTAAAAACAAATAGAACGA
CAGCGAGAGCAATCCTCCCAGAAGAAACAAATTAAAAAAGATGATAAAA
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protein sequence of jgi.p|Nanoce1779_2|556354

>mRNA_5333-protein ID=mRNA_5333-protein|Name=jgi.p|Nanoce1779_2|556354|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MDQQAFQEVASHQILQLAQQQEAQLDREIAKLETLGEDDFDKLRQRRLDK
MKKAEQQKNLYKQLGHGEYTHLANQQEFFGAAKHSPRVICHFYRPTTKYC
EVVDAHMSRLAGRHLETRFCKINAEKSPYLVEKLNIYMMPTLVCIKNQET
THHIKGLDEFGGTDEFSSDMFAYVLSSHGVLFYDGGRPESPTQAAKKKGV
NAIRMALRAGGSGGRKGEPSIREGLHEKKYDSEGSGDDEEF*
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mRNA from alignment at scaffold_13:189833..191181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5333 ID=mRNA_5333|Name=jgi.p|Nanoce1779_2|556354|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp|location=Sequence derived from alignment at scaffold_13:189833..191181+ (Nannochloropsis oceanica)
GCGCATGATCACAAGTCAGGTCCATCTTGGACCTTGCCGCACCGCATCGT
TCGTGGTTACATGCTTACTTCCTGAAGCACGCTTGTTATGGCCGCCCGGA
TCTATCCCTCGCGTCAGCGTCGTAATCTTTTCACCGTTCTGTGTCGGGAG
GTGTAATTAGGTGTTGTAAAGTGCATGCGTCTTGTCAACCTCCCCCTTGC
CATCTACCTGATTTTCGCTGTGCTTCTCCGTCTTTTCGCTTCCGTCCTTG
TGTCCAACGTGCAGCACCCATAGGCATGCACCATCCTCACGCCGCCAACA
ACTTGATTCATCTTTCCCGTCCCAATCCGCAATCCCAATCACAGGCAAAC
TCAAGGCCTTATTCGAAAAGCACGCCTCGCCCCTTTGTTTTCCTTCTTCG
CTGGAAGACAGCGCCTCAAGCGATACATCCCAACCGAACGCAAACAAGCA
ATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAATCCTCCAACT
GGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCCAAGCTTGAGA
CCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCGCCTTGACAAA
ATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAACTGGGCCACGG
GGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGGGCGGCTAAGC
ACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGACCAAATACTGC
GAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGCATCTCGAGAC
CAGGTTTTGTAAAATTAATGCAGAGAAAAGCCCGTACCTAGTGGAGAAAC
TAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAATCAGGAGACG
ACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCGATGAGTTTTC
CTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTGCTGTTTTATG
ACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAAGAAGGGGGTA
AATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAGGGAGGAAGGG
GGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTATGATAGTGAGG
GGAGTGGGGATGACGAGGAGTTTTAAATAAGACGAGAAGAGGGTACATTC
GCTCCGAGTATTTGCGCTGTGATTTGATGATATTGGGTGAAAAAAGAAGG
ACGTTTGAGGAGAGGAAGGATAAGATTATGTGTAAAAACAAATAGAACGA
CAGCGAGAGCAATCCTCCCAGAAGAAACAAATTAAAAAAGATGATAAAA
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Coding sequence (CDS) from alignment at scaffold_13:189833..191181+

>mRNA_5333 ID=mRNA_5333|Name=jgi.p|Nanoce1779_2|556354|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_13:189833..191181+ (Nannochloropsis oceanica)
ATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAATCCTCCAACT
GGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCCAAGCTTGAGA
CCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCGCCTTGACAAA
ATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAACTGGGCCACGG
GGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGGGCGGCTAAGC
ACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGACCAAATACTGC
GAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGCATCTCGAGAC
CAGGTTTTGTAAAATTAATGCAGAGAAAAGCCCGTACCTAGTGGAGAAAC
TAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAATCAGGAGACG
ACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCGATGAGTTTTC
CTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTGCTGTTTTATG
ACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAAGAAGGGGGTA
AATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAGGGAGGAAGGG
GGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTATGATAGTGAGG
GGAGTGGGGATGACGAGGAGTTTTAA
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Synonyms
Publications